; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10001403 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10001403
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptiontRNA-intron lyase
Genome locationChr09:16770842..16771561
RNA-Seq ExpressionHG10001403
SyntenyHG10001403
Gene Ontology termsGO:0000379 - tRNA-type intron splice site recognition and cleavage (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0000214 - tRNA-intron endonuclease complex (cellular component)
GO:0000213 - tRNA-intron endonuclease activity (molecular function)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsIPR006676 - tRNA-splicing endonuclease
IPR006677 - tRNA intron endonuclease, catalytic domain-like
IPR006678 - tRNA intron endonuclease, N-terminal
IPR011856 - tRNA endonuclease-like domain superfamily
IPR036167 - tRNA intron endonuclease, catalytic domain-like superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6570759.1 tRNA-splicing endonuclease subunit Sen2-1, partial [Cucurbita argyrosperma subsp. sororia]3.6e-12389.54Show/hide
Query:  MGPRWKGKGSEAKALADPMSNIVLQLQSSLTQSDAQGLLSGSTVLYQADEEQTDLLNRSCFGRPILTAEKDKQWFQFGMEEAFYLSNHLNCLKIVDGQDC
        MGPRWKGK SEA+ALADPMS IVLQLQ SLTQSDAQGLLSG ++LYQADEEQTDLLNR+CFGR I+TAEKDKQWFQFGMEEAFYLS HLNCLKIVDGQD 
Subjt:  MGPRWKGKGSEAKALADPMSNIVLQLQSSLTQSDAQGLLSGSTVLYQADEEQTDLLNRSCFGRPILTAEKDKQWFQFGMEEAFYLSNHLNCLKIVDGQDC

Query:  EKNVQELWKDMKSQKPTFPEFYIAYQHLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGSNENGRLRVWSDFLCTIRLCGSVAKTLLVLT
        EKNVQELW+DMKS+K TFPEFY+AYQHLR+KNW+VRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGSNEN RLRVWSDFLCTIRLCGSVAKTLLVL+
Subjt:  EKNVQELWKDMKSQKPTFPEFYIAYQHLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGSNENGRLRVWSDFLCTIRLCGSVAKTLLVLT

Query:  VNDNGSGFVSPSCLDSYSIEERTVTRWRPEQCRENPARV
        VNDNGSG VSPSCLD+YSIEERTVTRW PEQCRENP +V
Subjt:  VNDNGSGFVSPSCLDSYSIEERTVTRWRPEQCRENPARV

KAG7010605.1 tRNA-splicing endonuclease subunit Sen2-1, partial [Cucurbita argyrosperma subsp. argyrosperma]7.3e-12489.96Show/hide
Query:  MGPRWKGKGSEAKALADPMSNIVLQLQSSLTQSDAQGLLSGSTVLYQADEEQTDLLNRSCFGRPILTAEKDKQWFQFGMEEAFYLSNHLNCLKIVDGQDC
        MGPRWKGK SEA+ALADPMS IVLQLQSSLTQSDAQGLLSG ++LYQADEEQTDLLNR+CFGR I+TAEKDKQWFQFGMEEAFYLS HLNCLKIVDGQD 
Subjt:  MGPRWKGKGSEAKALADPMSNIVLQLQSSLTQSDAQGLLSGSTVLYQADEEQTDLLNRSCFGRPILTAEKDKQWFQFGMEEAFYLSNHLNCLKIVDGQDC

Query:  EKNVQELWKDMKSQKPTFPEFYIAYQHLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGSNENGRLRVWSDFLCTIRLCGSVAKTLLVLT
        EKNVQELW+DMKS+K TFPEFY+AYQHLR+KNW+VRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGSNEN RLRVWSDFLCTIRLCGSVAKTLLVL+
Subjt:  EKNVQELWKDMKSQKPTFPEFYIAYQHLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGSNENGRLRVWSDFLCTIRLCGSVAKTLLVLT

Query:  VNDNGSGFVSPSCLDSYSIEERTVTRWRPEQCRENPARV
        VNDNGSG VSPSCLD+YSIEERTVTRW PEQCRENP +V
Subjt:  VNDNGSGFVSPSCLDSYSIEERTVTRWRPEQCRENPARV

XP_022944534.1 tRNA-splicing endonuclease subunit Sen2-1-like [Cucurbita moschata]7.3e-12489.96Show/hide
Query:  MGPRWKGKGSEAKALADPMSNIVLQLQSSLTQSDAQGLLSGSTVLYQADEEQTDLLNRSCFGRPILTAEKDKQWFQFGMEEAFYLSNHLNCLKIVDGQDC
        MGPRWKGK SEA+ALADPMS IVLQLQSSLTQSDAQGLLSG ++LYQADEEQTDLLNR+CFGR I+TAEKDKQWFQFGMEEAFYLS HLNCLKIVDGQD 
Subjt:  MGPRWKGKGSEAKALADPMSNIVLQLQSSLTQSDAQGLLSGSTVLYQADEEQTDLLNRSCFGRPILTAEKDKQWFQFGMEEAFYLSNHLNCLKIVDGQDC

Query:  EKNVQELWKDMKSQKPTFPEFYIAYQHLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGSNENGRLRVWSDFLCTIRLCGSVAKTLLVLT
        EKNVQELW+DMKS+K TFPEFY+AYQHLR+KNW+VRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGSNEN RLRVWSDFLCTIRLCGSVAKTLLVL+
Subjt:  EKNVQELWKDMKSQKPTFPEFYIAYQHLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGSNENGRLRVWSDFLCTIRLCGSVAKTLLVLT

Query:  VNDNGSGFVSPSCLDSYSIEERTVTRWRPEQCRENPARV
        VNDNGSG VSPSCLD+YSIEERTVTRW PEQCRENP +V
Subjt:  VNDNGSGFVSPSCLDSYSIEERTVTRWRPEQCRENPARV

XP_022985538.1 tRNA-splicing endonuclease subunit Sen2-1-like [Cucurbita maxima]6.2e-12389.12Show/hide
Query:  MGPRWKGKGSEAKALADPMSNIVLQLQSSLTQSDAQGLLSGSTVLYQADEEQTDLLNRSCFGRPILTAEKDKQWFQFGMEEAFYLSNHLNCLKIVDGQDC
        M PRWKGK SEA+ALADPMS IVLQLQSSLTQSDAQGLLSG ++LYQADEEQTDLLNR+CFGR I+TA+ DKQWFQFGMEEAFYLS HLNCLKIVDGQD 
Subjt:  MGPRWKGKGSEAKALADPMSNIVLQLQSSLTQSDAQGLLSGSTVLYQADEEQTDLLNRSCFGRPILTAEKDKQWFQFGMEEAFYLSNHLNCLKIVDGQDC

Query:  EKNVQELWKDMKSQKPTFPEFYIAYQHLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGSNENGRLRVWSDFLCTIRLCGSVAKTLLVLT
        EKNVQELW+DMKSQK TFPEFY+AYQHLR+KNW+VRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGSNENGRLRVWSDFLCTIRLCGSVAKTLLVL+
Subjt:  EKNVQELWKDMKSQKPTFPEFYIAYQHLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGSNENGRLRVWSDFLCTIRLCGSVAKTLLVLT

Query:  VNDNGSGFVSPSCLDSYSIEERTVTRWRPEQCRENPARV
        VNDNG+G VSPSCLDS+SIEERTVTRW PEQCRENP +V
Subjt:  VNDNGSGFVSPSCLDSYSIEERTVTRWRPEQCRENPARV

XP_038900547.1 tRNA-splicing endonuclease subunit Sen2-1 [Benincasa hispida]7.3e-13295.82Show/hide
Query:  MGPRWKGKGSEAKALADPMSNIVLQLQSSLTQSDAQGLLSGSTVLYQADEEQTDLLNRSCFGRPILTAEKDKQWFQFGMEEAFYLSNHLNCLKIVDGQDC
        M PRWKGKGSEAKALADPMSNIVLQLQSSLTQS+AQGLLSGS VLYQADEEQTDLLNR+CFGRPILTAEKDKQWFQFGMEEAFYL  HLNCLKIVDGQDC
Subjt:  MGPRWKGKGSEAKALADPMSNIVLQLQSSLTQSDAQGLLSGSTVLYQADEEQTDLLNRSCFGRPILTAEKDKQWFQFGMEEAFYLSNHLNCLKIVDGQDC

Query:  EKNVQELWKDMKSQKPTFPEFYIAYQHLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGSNENGRLRVWSDFLCTIRLCGSVAKTLLVLT
        EKNVQELW+DMKSQKPTFPEFYIAYQHLRLKNWVVRPGSQYGVDFVAYRHHPALVHSE+AVLVLSEGGGSNENGRLRVWSDFLCTIRLCGSVAKTLLVLT
Subjt:  EKNVQELWKDMKSQKPTFPEFYIAYQHLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGSNENGRLRVWSDFLCTIRLCGSVAKTLLVLT

Query:  VNDNGSGFVSPSCLDSYSIEERTVTRWRPEQCRENPARV
        VNDNGSGFVSPSCLDSYSIEERTVTRW PEQCRENPA+V
Subjt:  VNDNGSGFVSPSCLDSYSIEERTVTRWRPEQCRENPARV

TrEMBL top hitse value%identityAlignment
A0A0A0KEN4 tRNA-intron lyase6.2e-12187.87Show/hide
Query:  MGPRWKGKGSEAKALADPMSNIVLQLQSSLTQSDAQGLLSGSTVLYQADEEQTDLLNRSCFGRPILTAEKDKQWFQFGMEEAFYLSNHLNCLKIVDGQDC
        M PRWKGK SEAKALADP+SN +L LQSS   S+AQGLLSGS +LY ADEEQTDLLNR+CFGRPILTAEKDKQWFQFGMEEAFYLS HLNCLKIVDGQDC
Subjt:  MGPRWKGKGSEAKALADPMSNIVLQLQSSLTQSDAQGLLSGSTVLYQADEEQTDLLNRSCFGRPILTAEKDKQWFQFGMEEAFYLSNHLNCLKIVDGQDC

Query:  EKNVQELWKDMKSQKPTFPEFYIAYQHLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGSNENGRLRVWSDFLCTIRLCGSVAKTLLVLT
        EKN QELW+ MK+QK TFPEFYIAY+HLRLKNWVVRPGSQYGVDFVAYRHHP+LVHSEFAVLVL EG  SN NGRLRVWSDFLCT+RLCGSVAKTLLVLT
Subjt:  EKNVQELWKDMKSQKPTFPEFYIAYQHLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGSNENGRLRVWSDFLCTIRLCGSVAKTLLVLT

Query:  VNDNGSGFVSPSCLDSYSIEERTVTRWRPEQCRENPARV
        VNDNGSGFVSPSCLDSYSIEERTVTRW PEQCRENPA+V
Subjt:  VNDNGSGFVSPSCLDSYSIEERTVTRWRPEQCRENPARV

A0A6J1CYW3 tRNA-intron lyase1.1e-12088.75Show/hide
Query:  MGPRWKGKGSEAKALADPMSNIVLQLQSSLTQSDAQGLLSGSTVLYQADEEQTDLLNRSCFGRPILTAEKDKQWFQFGMEEAFYLSNHLNCLKIVDGQDC
        MGPRWKGKGSEAKALADPMS IVLQLQSSLTQSDAQGLLSG +VLYQADEEQTDL NR+CFGRPI+TA+KDKQWFQ G+EEAFYLS HL CLKIVDGQDC
Subjt:  MGPRWKGKGSEAKALADPMSNIVLQLQSSLTQSDAQGLLSGSTVLYQADEEQTDLLNRSCFGRPILTAEKDKQWFQFGMEEAFYLSNHLNCLKIVDGQDC

Query:  EKNVQELWKDMKSQKPTFPEFYIAYQHLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGG-SNENGRLRVWSDFLCTIRLCGSVAKTLLVL
        EKN ++LW+ MKSQK TFPEFY AYQHLR+KNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGG SNENGRLRVWSDFLCTIRLCGSVAKTLLVL
Subjt:  EKNVQELWKDMKSQKPTFPEFYIAYQHLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGG-SNENGRLRVWSDFLCTIRLCGSVAKTLLVL

Query:  TVNDNGSGFVSPSCLDSYSIEERTVTRWRPEQCRENPARV
        +VN+NGS  VSPS LDSYSIEERTVTRW PEQCRENPA+V
Subjt:  TVNDNGSGFVSPSCLDSYSIEERTVTRWRPEQCRENPARV

A0A6J1FWV5 tRNA-intron lyase3.5e-12489.96Show/hide
Query:  MGPRWKGKGSEAKALADPMSNIVLQLQSSLTQSDAQGLLSGSTVLYQADEEQTDLLNRSCFGRPILTAEKDKQWFQFGMEEAFYLSNHLNCLKIVDGQDC
        MGPRWKGK SEA+ALADPMS IVLQLQSSLTQSDAQGLLSG ++LYQADEEQTDLLNR+CFGR I+TAEKDKQWFQFGMEEAFYLS HLNCLKIVDGQD 
Subjt:  MGPRWKGKGSEAKALADPMSNIVLQLQSSLTQSDAQGLLSGSTVLYQADEEQTDLLNRSCFGRPILTAEKDKQWFQFGMEEAFYLSNHLNCLKIVDGQDC

Query:  EKNVQELWKDMKSQKPTFPEFYIAYQHLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGSNENGRLRVWSDFLCTIRLCGSVAKTLLVLT
        EKNVQELW+DMKS+K TFPEFY+AYQHLR+KNW+VRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGSNEN RLRVWSDFLCTIRLCGSVAKTLLVL+
Subjt:  EKNVQELWKDMKSQKPTFPEFYIAYQHLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGSNENGRLRVWSDFLCTIRLCGSVAKTLLVLT

Query:  VNDNGSGFVSPSCLDSYSIEERTVTRWRPEQCRENPARV
        VNDNGSG VSPSCLD+YSIEERTVTRW PEQCRENP +V
Subjt:  VNDNGSGFVSPSCLDSYSIEERTVTRWRPEQCRENPARV

A0A6J1G716 tRNA-intron lyase9.0e-12089.03Show/hide
Query:  MGPRWKGKGSEAKALADPMSNIVLQLQSSLTQSDAQGLLSGSTVLYQADEEQTDLLNRSCFGRPILTAEKDKQWFQFGMEEAFYLSNHLNCLKIVDGQDC
        MGPRWKGKGSEAKALADP+S IVLQLQSSLTQSDAQGLLS  +VLYQADEEQ +LLNR+CFGRPI++AEKDKQWFQFGMEEAFYLS +LNCLKIVDGQDC
Subjt:  MGPRWKGKGSEAKALADPMSNIVLQLQSSLTQSDAQGLLSGSTVLYQADEEQTDLLNRSCFGRPILTAEKDKQWFQFGMEEAFYLSNHLNCLKIVDGQDC

Query:  EKNVQELWKDMKSQKPTFPEFYIAYQHLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGSNENGRLRVWSDFLCTIRLCGSVAKTLLVLT
        EKN  ELW  MKSQK TFPEFY AYQ+LR+KNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEG GSNENGRLRVWSDFLCTIRLCGSVAKTLLVLT
Subjt:  EKNVQELWKDMKSQKPTFPEFYIAYQHLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGSNENGRLRVWSDFLCTIRLCGSVAKTLLVLT

Query:  VNDNGSGFVSPSCLDSYSIEERTVTRWRPEQCRENPA
        VN NG+  VSPSCLDSYSIEERTVTRW PEQCRENPA
Subjt:  VNDNGSGFVSPSCLDSYSIEERTVTRWRPEQCRENPA

A0A6J1JBL2 tRNA-intron lyase3.0e-12389.12Show/hide
Query:  MGPRWKGKGSEAKALADPMSNIVLQLQSSLTQSDAQGLLSGSTVLYQADEEQTDLLNRSCFGRPILTAEKDKQWFQFGMEEAFYLSNHLNCLKIVDGQDC
        M PRWKGK SEA+ALADPMS IVLQLQSSLTQSDAQGLLSG ++LYQADEEQTDLLNR+CFGR I+TA+ DKQWFQFGMEEAFYLS HLNCLKIVDGQD 
Subjt:  MGPRWKGKGSEAKALADPMSNIVLQLQSSLTQSDAQGLLSGSTVLYQADEEQTDLLNRSCFGRPILTAEKDKQWFQFGMEEAFYLSNHLNCLKIVDGQDC

Query:  EKNVQELWKDMKSQKPTFPEFYIAYQHLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGSNENGRLRVWSDFLCTIRLCGSVAKTLLVLT
        EKNVQELW+DMKSQK TFPEFY+AYQHLR+KNW+VRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGSNENGRLRVWSDFLCTIRLCGSVAKTLLVL+
Subjt:  EKNVQELWKDMKSQKPTFPEFYIAYQHLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGSNENGRLRVWSDFLCTIRLCGSVAKTLLVLT

Query:  VNDNGSGFVSPSCLDSYSIEERTVTRWRPEQCRENPARV
        VNDNG+G VSPSCLDS+SIEERTVTRW PEQCRENP +V
Subjt:  VNDNGSGFVSPSCLDSYSIEERTVTRWRPEQCRENPARV

SwissProt top hitse value%identityAlignment
Q4JAF4 tRNA-splicing endonuclease3.6e-0928.49Show/hide
Query:  QGLLSGSTVLYQADEEQTDLLNRSCFGRPI-----LTAEKDKQWFQFGMEEAFYLSNHLNCLKIVDGQDCEKNVQELWKDMKSQKPTFPEFYIAYQHLRL
        QG + G  VL    E+  ++     +G+P+      + E  K+     + EA YLS       I DG+  +  +  L+K      P F   Y  Y+ LR 
Subjt:  QGLLSGSTVLYQADEEQTDLLNRSCFGRPI-----LTAEKDKQWFQFGMEEAFYLSNHLNCLKIVDGQDCEKNVQELWKDMKSQKPTFPEFYIAYQHLRL

Query:  KNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGSNENGRLRVWSDFLCTIRLCGSVAKTLLVLTVN
        K +VVR G +YG DF  Y   P L H+ + V+ + E    + N       + L   R+  S  K L++  VN
Subjt:  KNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGSNENGRLRVWSDFLCTIRLCGSVAKTLLVLTVN

Q5Z6B1 Probable tRNA-splicing endonuclease subunit Sen27.7e-6050.62Show/hide
Query:  GPRWK----GKGSEAKALADPMSNIVLQLQSSLTQSDAQGLLS--GSTVLYQADEEQTDLLNRSCFGRPILTAEKDKQWFQFGMEEAFYLSNHLNCLKIV
        GPRWK    GK   + A A+PMS IV +L++S   S    +LS  G + +     EQ  +LNR+ FG  I  A   K WFQ   EE FYL + LNC+++ 
Subjt:  GPRWK----GKGSEAKALADPMSNIVLQLQSSLTQSDAQGLLS--GSTVLYQADEEQTDLLNRSCFGRPILTAEKDKQWFQFGMEEAFYLSNHLNCLKIV

Query:  DGQDCEKNVQELWKDMKSQKPTFPEFYIAYQHLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGG-SNENGRLRVWSDFLCTIRLCGSVAK
           + + +  ELW   +S   +FPE Y AY HLRLKNWVVR G QYG DFVAYRHHPALVHSEFAV+V+ EG    N  GRL VWSD LC +R  GSVAK
Subjt:  DGQDCEKNVQELWKDMKSQKPTFPEFYIAYQHLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGG-SNENGRLRVWSDFLCTIRLCGSVAK

Query:  TLLVLTVNDNGS-GFVSPSCLDSYSIEERTVTRWRPEQCRE
        TLLVLT++ +      SP CL+   + ERT+TRW  +QCRE
Subjt:  TLLVLTVNDNGS-GFVSPSCLDSYSIEERTVTRWRPEQCRE

Q9LSS3 tRNA-splicing endonuclease subunit Sen2-22.9e-6753.59Show/hide
Query:  MGPRWKGKGSEAKALADPMSNIVLQLQSSLTQSDAQGLLSGSTVLYQADEEQTDLLNRSCFGRPILTAEKDKQWFQFGMEEAFYLSNHLNCLKIVDGQDC
        M PRWK KG+EAKALA+P+S  V +LQ SL ++++ G LS   VL   + EQ +LL+R CFGR +L+AEK K+W Q   EEAF+L  +L C+KI     C
Subjt:  MGPRWKGKGSEAKALADPMSNIVLQLQSSLTQSDAQGLLSGSTVLYQADEEQTDLLNRSCFGRPILTAEKDKQWFQFGMEEAFYLSNHLNCLKIVDGQDC

Query:  EKNVQELWKDMKSQKPTFPEFYIAYQHLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGSNENGRLRVWSDFLCTIRLCGSVAKTLLVLT
         +N  + W  MKS++P FP F+ AY HLR KNWV+R G QYGVDFVAYRHHP+LVHSE++VLV      S ++ RLRVWSD  C +RL GSVAKTLL L 
Subjt:  EKNVQELWKDMKSQKPTFPEFYIAYQHLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGSNENGRLRVWSDFLCTIRLCGSVAKTLLVLT

Query:  VNDN--GSGFVSPSCLDSYSIEERTVTRWRPEQCREN
        VN N  G       CL+++++EE+T++RW PE  RE+
Subjt:  VNDN--GSGFVSPSCLDSYSIEERTVTRWRPEQCREN

Q9M1E8 tRNA-splicing endonuclease subunit Sen2-12.6e-6855.19Show/hide
Query:  MGPRWKGKGSEAKALADPMSNIVLQLQSSLTQSDAQGLLSGSTVLYQADEEQTDLLNRSCFGRPILTAEKDKQWFQFGMEEAFYLSNHLNCLKI-VDGQD
        M PRWK KG+EAKALA+P+S  V +L+SSLTQ++A G LS   VL   + E+ +LL+R CFGR ++ AEKDK+W Q   EEAF+L   L C+KI + G+ 
Subjt:  MGPRWKGKGSEAKALADPMSNIVLQLQSSLTQSDAQGLLSGSTVLYQADEEQTDLLNRSCFGRPILTAEKDKQWFQFGMEEAFYLSNHLNCLKI-VDGQD

Query:  CEKNVQELWKDMKSQKPTFPEFYIAYQHLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGSNENGRLRVWSDFLCTIRLCGSVAKTLLVL
         E  V +LW+ M S K  F   Y AY HLR KNW+VR G QYGVDFV YRHHP+LVHSE+AVLV S GG    N RL+VWSD  C++RL GSVAK+LLVL
Subjt:  CEKNVQELWKDMKSQKPTFPEFYIAYQHLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGSNENGRLRVWSDFLCTIRLCGSVAKTLLVL

Query:  TVND--NGSGFVSPSCLDSYSIEERTVTRWRPEQCRENPAR
         VN   N      P CL+ Y++EE+T+ RW PE  RE+  R
Subjt:  TVND--NGSGFVSPSCLDSYSIEERTVTRWRPEQCRENPAR

Q9P6Y2 Probable tRNA-splicing endonuclease subunit tsp-24.3e-1030.26Show/hide
Query:  DKQWFQFGMEEAFYLSNHLNCLKIVD--GQDCEKNVQELWK------------DMKSQKPTFPEFYIAYQHLRLKNWVVRPGSQYGVDFVAYRHHPALVH
        DK+ FQ   EEAF+L+  L  L++VD   +    N Q L K            D  S +  F   Y  Y H R   WV R G ++GVD++ Y+  P   H
Subjt:  DKQWFQFGMEEAFYLSNHLNCLKIVD--GQDCEKNVQELWK------------DMKSQKPTFPEFYIAYQHLRLKNWVVRPGSQYGVDFVAYRHHPALVH

Query:  SEFAVLVLSEGGG------SNENGRLRVWSDFLCTIRLCGSVAKTLLVLTVN
        SEF ++V+            +E  + + WS  +   R+   V K+L+++ V+
Subjt:  SEFAVLVLSEGGG------SNENGRLRVWSDFLCTIRLCGSVAKTLLVLTVN

Arabidopsis top hitse value%identityAlignment
AT3G45577.1 tRNA-intron endonucleases1.4e-1646.46Show/hide
Query:  AQGLLSGSTVLYQADEEQTDLLNRSCFGRPILTAEKDKQWFQFGMEEAFYLSNHLNCLKI-VDGQDCEKNVQELWKDMKSQKPTFPEFYIAYQHLRLKN
        A G LS   V      EQ +LL+R CFGR +  AEKDK+W Q   EEAF+L   L C+KI + G+     V +LW+ ++S KP F   Y AY HLR KN
Subjt:  AQGLLSGSTVLYQADEEQTDLLNRSCFGRPILTAEKDKQWFQFGMEEAFYLSNHLNCLKI-VDGQDCEKNVQELWKDMKSQKPTFPEFYIAYQHLRLKN

AT3G45590.1 splicing endonuclease 11.9e-6955.19Show/hide
Query:  MGPRWKGKGSEAKALADPMSNIVLQLQSSLTQSDAQGLLSGSTVLYQADEEQTDLLNRSCFGRPILTAEKDKQWFQFGMEEAFYLSNHLNCLKI-VDGQD
        M PRWK KG+EAKALA+P+S  V +L+SSLTQ++A G LS   VL   + E+ +LL+R CFGR ++ AEKDK+W Q   EEAF+L   L C+KI + G+ 
Subjt:  MGPRWKGKGSEAKALADPMSNIVLQLQSSLTQSDAQGLLSGSTVLYQADEEQTDLLNRSCFGRPILTAEKDKQWFQFGMEEAFYLSNHLNCLKI-VDGQD

Query:  CEKNVQELWKDMKSQKPTFPEFYIAYQHLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGSNENGRLRVWSDFLCTIRLCGSVAKTLLVL
         E  V +LW+ M S K  F   Y AY HLR KNW+VR G QYGVDFV YRHHP+LVHSE+AVLV S GG    N RL+VWSD  C++RL GSVAK+LLVL
Subjt:  CEKNVQELWKDMKSQKPTFPEFYIAYQHLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGSNENGRLRVWSDFLCTIRLCGSVAKTLLVL

Query:  TVND--NGSGFVSPSCLDSYSIEERTVTRWRPEQCRENPAR
         VN   N      P CL+ Y++EE+T+ RW PE  RE+  R
Subjt:  TVND--NGSGFVSPSCLDSYSIEERTVTRWRPEQCRENPAR

AT3G45590.2 splicing endonuclease 11.9e-6955.19Show/hide
Query:  MGPRWKGKGSEAKALADPMSNIVLQLQSSLTQSDAQGLLSGSTVLYQADEEQTDLLNRSCFGRPILTAEKDKQWFQFGMEEAFYLSNHLNCLKI-VDGQD
        M PRWK KG+EAKALA+P+S  V +L+SSLTQ++A G LS   VL   + E+ +LL+R CFGR ++ AEKDK+W Q   EEAF+L   L C+KI + G+ 
Subjt:  MGPRWKGKGSEAKALADPMSNIVLQLQSSLTQSDAQGLLSGSTVLYQADEEQTDLLNRSCFGRPILTAEKDKQWFQFGMEEAFYLSNHLNCLKI-VDGQD

Query:  CEKNVQELWKDMKSQKPTFPEFYIAYQHLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGSNENGRLRVWSDFLCTIRLCGSVAKTLLVL
         E  V +LW+ M S K  F   Y AY HLR KNW+VR G QYGVDFV YRHHP+LVHSE+AVLV S GG    N RL+VWSD  C++RL GSVAK+LLVL
Subjt:  CEKNVQELWKDMKSQKPTFPEFYIAYQHLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGSNENGRLRVWSDFLCTIRLCGSVAKTLLVL

Query:  TVND--NGSGFVSPSCLDSYSIEERTVTRWRPEQCRENPAR
         VN   N      P CL+ Y++EE+T+ RW PE  RE+  R
Subjt:  TVND--NGSGFVSPSCLDSYSIEERTVTRWRPEQCRENPAR

AT5G60230.1 splicing endonuclease 22.1e-6853.59Show/hide
Query:  MGPRWKGKGSEAKALADPMSNIVLQLQSSLTQSDAQGLLSGSTVLYQADEEQTDLLNRSCFGRPILTAEKDKQWFQFGMEEAFYLSNHLNCLKIVDGQDC
        M PRWK KG+EAKALA+P+S  V +LQ SL ++++ G LS   VL   + EQ +LL+R CFGR +L+AEK K+W Q   EEAF+L  +L C+KI     C
Subjt:  MGPRWKGKGSEAKALADPMSNIVLQLQSSLTQSDAQGLLSGSTVLYQADEEQTDLLNRSCFGRPILTAEKDKQWFQFGMEEAFYLSNHLNCLKIVDGQDC

Query:  EKNVQELWKDMKSQKPTFPEFYIAYQHLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGSNENGRLRVWSDFLCTIRLCGSVAKTLLVLT
         +N  + W  MKS++P FP F+ AY HLR KNWV+R G QYGVDFVAYRHHP+LVHSE++VLV      S ++ RLRVWSD  C +RL GSVAKTLL L 
Subjt:  EKNVQELWKDMKSQKPTFPEFYIAYQHLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGSNENGRLRVWSDFLCTIRLCGSVAKTLLVLT

Query:  VNDN--GSGFVSPSCLDSYSIEERTVTRWRPEQCREN
        VN N  G       CL+++++EE+T++RW PE  RE+
Subjt:  VNDN--GSGFVSPSCLDSYSIEERTVTRWRPEQCREN

AT5G60230.2 splicing endonuclease 22.1e-6853.59Show/hide
Query:  MGPRWKGKGSEAKALADPMSNIVLQLQSSLTQSDAQGLLSGSTVLYQADEEQTDLLNRSCFGRPILTAEKDKQWFQFGMEEAFYLSNHLNCLKIVDGQDC
        M PRWK KG+EAKALA+P+S  V +LQ SL ++++ G LS   VL   + EQ +LL+R CFGR +L+AEK K+W Q   EEAF+L  +L C+KI     C
Subjt:  MGPRWKGKGSEAKALADPMSNIVLQLQSSLTQSDAQGLLSGSTVLYQADEEQTDLLNRSCFGRPILTAEKDKQWFQFGMEEAFYLSNHLNCLKIVDGQDC

Query:  EKNVQELWKDMKSQKPTFPEFYIAYQHLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGSNENGRLRVWSDFLCTIRLCGSVAKTLLVLT
         +N  + W  MKS++P FP F+ AY HLR KNWV+R G QYGVDFVAYRHHP+LVHSE++VLV      S ++ RLRVWSD  C +RL GSVAKTLL L 
Subjt:  EKNVQELWKDMKSQKPTFPEFYIAYQHLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGSNENGRLRVWSDFLCTIRLCGSVAKTLLVLT

Query:  VNDN--GSGFVSPSCLDSYSIEERTVTRWRPEQCREN
        VN N  G       CL+++++EE+T++RW PE  RE+
Subjt:  VNDN--GSGFVSPSCLDSYSIEERTVTRWRPEQCREN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGCCGAGATGGAAAGGGAAGGGTTCAGAAGCCAAAGCTCTAGCAGATCCCATGTCGAATATTGTACTTCAGCTTCAATCTTCTCTGACACAGTCGGACGCTCAAGG
ATTATTATCTGGTTCTACTGTACTTTATCAAGCCGATGAAGAACAAACCGATCTTCTTAATCGCTCTTGTTTCGGTCGACCAATTCTTACCGCCGAGAAGGACAAGCAAT
GGTTTCAATTCGGCATGGAAGAGGCTTTTTACTTGTCCAATCATTTGAATTGCCTCAAAATTGTCGATGGACAAGACTGTGAAAAGAATGTTCAAGAGCTTTGGAAGGAT
ATGAAGTCCCAAAAGCCTACATTCCCTGAGTTTTACATCGCTTATCAACACCTTCGATTGAAGAATTGGGTTGTGAGACCTGGATCTCAATACGGGGTGGATTTTGTGGC
TTATCGTCACCATCCAGCTCTTGTTCACTCTGAATTTGCTGTTCTTGTGTTGTCCGAAGGAGGAGGCAGTAATGAAAATGGGCGATTGAGGGTTTGGTCTGATTTTCTAT
GCACAATTCGGCTTTGTGGAAGTGTTGCAAAAACGCTGCTAGTTCTTACTGTCAATGATAATGGAAGCGGTTTTGTTTCTCCTTCGTGTTTGGACAGTTACTCCATTGAA
GAACGCACAGTTACAAGATGGCGTCCAGAACAGTGCCGCGAAAATCCTGCAAGAGTGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGGCCGAGATGGAAAGGGAAGGGTTCAGAAGCCAAAGCTCTAGCAGATCCCATGTCGAATATTGTACTTCAGCTTCAATCTTCTCTGACACAGTCGGACGCTCAAGG
ATTATTATCTGGTTCTACTGTACTTTATCAAGCCGATGAAGAACAAACCGATCTTCTTAATCGCTCTTGTTTCGGTCGACCAATTCTTACCGCCGAGAAGGACAAGCAAT
GGTTTCAATTCGGCATGGAAGAGGCTTTTTACTTGTCCAATCATTTGAATTGCCTCAAAATTGTCGATGGACAAGACTGTGAAAAGAATGTTCAAGAGCTTTGGAAGGAT
ATGAAGTCCCAAAAGCCTACATTCCCTGAGTTTTACATCGCTTATCAACACCTTCGATTGAAGAATTGGGTTGTGAGACCTGGATCTCAATACGGGGTGGATTTTGTGGC
TTATCGTCACCATCCAGCTCTTGTTCACTCTGAATTTGCTGTTCTTGTGTTGTCCGAAGGAGGAGGCAGTAATGAAAATGGGCGATTGAGGGTTTGGTCTGATTTTCTAT
GCACAATTCGGCTTTGTGGAAGTGTTGCAAAAACGCTGCTAGTTCTTACTGTCAATGATAATGGAAGCGGTTTTGTTTCTCCTTCGTGTTTGGACAGTTACTCCATTGAA
GAACGCACAGTTACAAGATGGCGTCCAGAACAGTGCCGCGAAAATCCTGCAAGAGTGTGA
Protein sequenceShow/hide protein sequence
MGPRWKGKGSEAKALADPMSNIVLQLQSSLTQSDAQGLLSGSTVLYQADEEQTDLLNRSCFGRPILTAEKDKQWFQFGMEEAFYLSNHLNCLKIVDGQDCEKNVQELWKD
MKSQKPTFPEFYIAYQHLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGSNENGRLRVWSDFLCTIRLCGSVAKTLLVLTVNDNGSGFVSPSCLDSYSIE
ERTVTRWRPEQCRENPARV