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HG10001502 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10001502
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionTropomyosin
Genome locationChr09:17622666..17622974
RNA-Seq ExpressionHG10001502
SyntenyHG10001502
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0061866.1 tropomyosin [Cucumis melo var. makuwa]4.5e-3085.86Show/hide
Query:  SSKICFCIPRHKNGHKTDGGSEKSSKSKSSRCKSRRSAKGGKHSSSSDSSGNGNTADAGAGSATAVAAVAVTAVTMDAFDDDGGSTHGHGGEGGGGGGG
        SSKICFCIPRHKNGHK DGGSEKSSKSK SR KSRR +K GKHSS SDSSGNGN+ DAGA SATAVAAVAVTAVTMDA DDDGGSTH HGGEGG GG G
Subjt:  SSKICFCIPRHKNGHKTDGGSEKSSKSKSSRCKSRRSAKGGKHSSSSDSSGNGNTADAGAGSATAVAAVAVTAVTMDAFDDDGGSTHGHGGEGGGGGGG

KAE8645885.1 hypothetical protein Csa_017706 [Cucumis sativus]3.2e-2883Show/hide
Query:  SSKICFCIPRHKNGHKTDGGSEKSSKSKSSRCKSRRSAKGGKHSSSSDSSGNGNTADAGAGSATAVAAVAVTAVTMDAFDDDGGSTHGHGGEGGGGGGGD
        SSKICFCIPRHKNGHK DGGSEKSSKSK SR KS R +K GKHSSSSDSSGNGN  +  A SATAVAAVAVTAVTMDA DDDGGSTH HGGEGG G GGD
Subjt:  SSKICFCIPRHKNGHKTDGGSEKSSKSKSSRCKSRRSAKGGKHSSSSDSSGNGNTADAGAGSATAVAAVAVTAVTMDAFDDDGGSTHGHGGEGGGGGGGD

KAG6605437.1 hypothetical protein SDJN03_02754, partial [Cucurbita argyrosperma subsp. sororia]7.9e-2778.5Show/hide
Query:  MESSKICFCIPRHKNGHKTDGGSEKSSKSKSSRCKSRRSAKGGKHSSSSDSSGNGNTADAGAGSAT-AVAAVAV----TAVTMDAFDDDGGSTHGHGGEG
        MESSKICFCIPRHKNG K DGGSEKSSKSK SR KSRR+AKGGKHS SSDSSG+GNT DA   SA+ AVAAVAV    T V +DA +DDGGS+HGHGGEG
Subjt:  MESSKICFCIPRHKNGHKTDGGSEKSSKSKSSRCKSRRSAKGGKHSSSSDSSGNGNTADAGAGSAT-AVAAVAV----TAVTMDAFDDDGGSTHGHGGEG

Query:  GGGGGGD
        GGGGGGD
Subjt:  GGGGGGD

KAG7010529.1 hypothetical protein SDJN02_27323, partial [Cucurbita argyrosperma subsp. argyrosperma]1.2e-2784.62Show/hide
Query:  MESSKICFCIPRHKNGHKTDGGSEKSSKSKSSRCKSRRSAKGGKHSSSSDSSGNGNTADA-GAGSATAVAAVAVTAVTMDAFD-DDGGSTHGHGGEGGGG
        MESSKICFCIPRHKN HK DGGSEKSSKSK SR KS   AK GKHSSSSDSSGNGNT DA  AGSA AVAA+AVTAVTMDA D DDGGSTH HGGEGGGG
Subjt:  MESSKICFCIPRHKNGHKTDGGSEKSSKSKSSRCKSRRSAKGGKHSSSSDSSGNGNTADA-GAGSATAVAAVAVTAVTMDAFD-DDGGSTHGHGGEGGGG

Query:  GGGD
        GGGD
Subjt:  GGGD

TYK15390.1 tropomyosin [Cucumis melo var. makuwa]4.5e-3085.86Show/hide
Query:  SSKICFCIPRHKNGHKTDGGSEKSSKSKSSRCKSRRSAKGGKHSSSSDSSGNGNTADAGAGSATAVAAVAVTAVTMDAFDDDGGSTHGHGGEGGGGGGG
        SSKICFCIPRHKNGHK DGGSEKSSKSK SR KSRR +K GKHSS SDSSGNGN+ DAGA SATAVAAVAVTAVTMDA DDDGGSTH HGGEGG GG G
Subjt:  SSKICFCIPRHKNGHKTDGGSEKSSKSKSSRCKSRRSAKGGKHSSSSDSSGNGNTADAGAGSATAVAAVAVTAVTMDAFDDDGGSTHGHGGEGGGGGGG

TrEMBL top hitse value%identityAlignment
A0A0A0KFD0 Uncharacterized protein1.5e-2883Show/hide
Query:  SSKICFCIPRHKNGHKTDGGSEKSSKSKSSRCKSRRSAKGGKHSSSSDSSGNGNTADAGAGSATAVAAVAVTAVTMDAFDDDGGSTHGHGGEGGGGGGGD
        SSKICFCIPRHKNGHK DGGSEKSSKSK SR KS R +K GKHSSSSDSSGNGN  +  A SATAVAAVAVTAVTMDA DDDGGSTH HGGEGG G GGD
Subjt:  SSKICFCIPRHKNGHKTDGGSEKSSKSKSSRCKSRRSAKGGKHSSSSDSSGNGNTADAGAGSATAVAAVAVTAVTMDAFDDDGGSTHGHGGEGGGGGGGD

A0A5A7V5U9 Tropomyosin2.2e-3085.86Show/hide
Query:  SSKICFCIPRHKNGHKTDGGSEKSSKSKSSRCKSRRSAKGGKHSSSSDSSGNGNTADAGAGSATAVAAVAVTAVTMDAFDDDGGSTHGHGGEGGGGGGG
        SSKICFCIPRHKNGHK DGGSEKSSKSK SR KSRR +K GKHSS SDSSGNGN+ DAGA SATAVAAVAVTAVTMDA DDDGGSTH HGGEGG GG G
Subjt:  SSKICFCIPRHKNGHKTDGGSEKSSKSKSSRCKSRRSAKGGKHSSSSDSSGNGNTADAGAGSATAVAAVAVTAVTMDAFDDDGGSTHGHGGEGGGGGGG

A0A5D3CVK1 Tropomyosin2.2e-3085.86Show/hide
Query:  SSKICFCIPRHKNGHKTDGGSEKSSKSKSSRCKSRRSAKGGKHSSSSDSSGNGNTADAGAGSATAVAAVAVTAVTMDAFDDDGGSTHGHGGEGGGGGGG
        SSKICFCIPRHKNGHK DGGSEKSSKSK SR KSRR +K GKHSS SDSSGNGN+ DAGA SATAVAAVAVTAVTMDA DDDGGSTH HGGEGG GG G
Subjt:  SSKICFCIPRHKNGHKTDGGSEKSSKSKSSRCKSRRSAKGGKHSSSSDSSGNGNTADAGAGSATAVAAVAVTAVTMDAFDDDGGSTHGHGGEGGGGGGG

A0A6J1D515 circumsporozoite protein-like6.1e-2576.85Show/hide
Query:  MESSKICFCIPRHKNGHKTDGGSEKSSKSKSSRCKSRRSAKGGKHSSSSDSSGNGNT---ADAGAGSATAVAAVAV---TAVTMDAFDDDGGSTHGHGGE
        MES+KICFCIPRHKNGHK +GGSEKSSKSK SR KSRR  KGGKHSSSSDSSG+GNT   A AG GS  AVAAV V   TA TMDA +DDGGS HGHGG 
Subjt:  MESSKICFCIPRHKNGHKTDGGSEKSSKSKSSRCKSRRSAKGGKHSSSSDSSGNGNT---ADAGAGSATAVAAVAV---TAVTMDAFDDDGGSTHGHGGE

Query:  GGGGGGGD
        GG GGGGD
Subjt:  GGGGGGGD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGTCCTCAAAGATTTGTTTCTGTATTCCTCGCCATAAAAATGGCCACAAAACTGATGGAGGATCGGAGAAATCTTCCAAATCAAAGTCTTCTCGCTGCAAATCTCG
CCGAAGCGCAAAAGGAGGTAAGCATTCCTCTAGTAGTGATAGTAGTGGAAATGGAAACACAGCTGATGCAGGTGCAGGCAGCGCCACCGCCGTGGCTGCTGTTGCGGTCA
CAGCAGTGACCATGGATGCCTTTGACGATGACGGTGGCAGCACCCATGGGCACGGTGGTGAGGGAGGCGGCGGGGGTGGTGGAGATTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAGTCCTCAAAGATTTGTTTCTGTATTCCTCGCCATAAAAATGGCCACAAAACTGATGGAGGATCGGAGAAATCTTCCAAATCAAAGTCTTCTCGCTGCAAATCTCG
CCGAAGCGCAAAAGGAGGTAAGCATTCCTCTAGTAGTGATAGTAGTGGAAATGGAAACACAGCTGATGCAGGTGCAGGCAGCGCCACCGCCGTGGCTGCTGTTGCGGTCA
CAGCAGTGACCATGGATGCCTTTGACGATGACGGTGGCAGCACCCATGGGCACGGTGGTGAGGGAGGCGGCGGGGGTGGTGGAGATTAG
Protein sequenceShow/hide protein sequence
MESSKICFCIPRHKNGHKTDGGSEKSSKSKSSRCKSRRSAKGGKHSSSSDSSGNGNTADAGAGSATAVAAVAVTAVTMDAFDDDGGSTHGHGGEGGGGGGGD