; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10001507 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10001507
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionMitochondrial 28S Ribosomal protein
Genome locationChr09:17670504..17672342
RNA-Seq ExpressionHG10001507
SyntenyHG10001507
Gene Ontology termsGO:0005739 - mitochondrion (cellular component)
GO:0016020 - membrane (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR032053 - Mitochondrial 28S ribosomal protein S34


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004143137.1 uncharacterized protein LOC101207989 [Cucumis sativus]3.5e-6589.66Show/hide
Query:  MAVANRTAISRALDFSRLSSSFIRSFSTSSPSTSSSNPNASPASSK-KKRRKKKNLFEVVQFLPNWGVGYHVAKAHWDEISYQITKINLYKSGTHGKAWG
        MAVANRTAISRALDFSRLSSSF+R+FS+SSPSTSSSNPNASP SS+ K+R+KKKNLFEVVQFLPNWGVGYHVAK+HWDEISYQITKINLYKSGTHGKAWG
Subjt:  MAVANRTAISRALDFSRLSSSFIRSFSTSSPSTSSSNPNASPASSK-KKRRKKKNLFEVVQFLPNWGVGYHVAKAHWDEISYQITKINLYKSGTHGKAWG

Query:  IAHKDGTPIAEAPKKISGVHKRCWKYIASLPSSGESNASAELQTS
        IAHK+GTPI EAPKKISGVHKRCWKYIASLP SGES  SAE+QTS
Subjt:  IAHKDGTPIAEAPKKISGVHKRCWKYIASLPSSGESNASAELQTS

XP_008464074.1 PREDICTED: uncharacterized protein LOC103502049 [Cucumis melo]1.5e-6387.59Show/hide
Query:  MAVANRTAISRALDFSRLSSSFIRSFSTSSPSTSSSNPNASPASSK-KKRRKKKNLFEVVQFLPNWGVGYHVAKAHWDEISYQITKINLYKSGTHGKAWG
        MAVANRTAISRALDFSRLSSSFIR+F++SSPSTSSSNPNASP+SS+ K+R+KKKNLFEV+QFLPNWGVGYHVAK+HWDEISYQITKINLYKSGTHGKAWG
Subjt:  MAVANRTAISRALDFSRLSSSFIRSFSTSSPSTSSSNPNASPASSK-KKRRKKKNLFEVVQFLPNWGVGYHVAKAHWDEISYQITKINLYKSGTHGKAWG

Query:  IAHKDGTPIAEAPKKISGVHKRCWKYIASLPSSGESNASAELQTS
        IAHK+G PI EAPKKISGVHKRCWKYIASLP  GES  SAE+QTS
Subjt:  IAHKDGTPIAEAPKKISGVHKRCWKYIASLPSSGESNASAELQTS

XP_022944512.1 uncharacterized protein LOC111448948 [Cucurbita moschata]7.6e-6084.14Show/hide
Query:  MAVANRTAISRALDFSRLSSSFIRSFSTSSPSTSSSNPNASPASSK-KKRRKKKNLFEVVQFLPNWGVGYHVAKAHWDEISYQITKINLYKSGTHGKAWG
        M+VANR+AIS AL FSRLSSSF RSF+TSSPS S+ NPNA  AS+K K+R+KKKNLFEVVQFLPNWGVGYHVAKAHWDEISYQITK+NLYKSGTHGKAWG
Subjt:  MAVANRTAISRALDFSRLSSSFIRSFSTSSPSTSSSNPNASPASSK-KKRRKKKNLFEVVQFLPNWGVGYHVAKAHWDEISYQITKINLYKSGTHGKAWG

Query:  IAHKDGTPIAEAPKKISGVHKRCWKYIASLPSSGESNASAELQTS
        +AHKDGT IAEAPKKISGVHKRCWKYIASLP SG+S+ SAE+QTS
Subjt:  IAHKDGTPIAEAPKKISGVHKRCWKYIASLPSSGESNASAELQTS

XP_023532313.1 uncharacterized protein LOC111794505 [Cucurbita pepo subsp. pepo]1.4e-5880.13Show/hide
Query:  MAVANRTAISRALDFSRLSSSFIRSFSTSSPSTSSSNPNASPASSKKKRR-KKKNLFEVVQFLPNWGVGYHVAKAHWDEISYQITKINLYKSGTHGKAWG
        MAVANRT ISRALDFSRL+SSFIR+FSTS+ STSSS+P+AS A+SK KRR KKKNLFEV+QFLPNWGVGYHVAK HWDEISYQITKINLYK+GTHGKAWG
Subjt:  MAVANRTAISRALDFSRLSSSFIRSFSTSSPSTSSSNPNASPASSKKKRR-KKKNLFEVVQFLPNWGVGYHVAKAHWDEISYQITKINLYKSGTHGKAWG

Query:  IAHKDGTPIAEAPKKISGVHKRCWKYIASLPSS-----------GESNASAELQTS
        IAHK+G PIAEAPKKISGVHKRCWKYI SLP S           GESN SAE QTS
Subjt:  IAHKDGTPIAEAPKKISGVHKRCWKYIASLPSS-----------GESNASAELQTS

XP_038900676.1 uncharacterized protein LOC120087826 [Benincasa hispida]9.3e-6693.01Show/hide
Query:  VANRTAISRALDFSRLSSSFIRSFSTSSPSTSSSNPNASPASSKKKRR-KKKNLFEVVQFLPNWGVGYHVAKAHWDEISYQITKINLYKSGTHGKAWGIA
        VANRTAISRALDFSRLSS+FIR+FSTSSPSTSSSNPNAS AS+K KRR KKKNLFEVVQFLPNWGVGYHVAKAHWDEISYQITKINLYK+GTHGKAWGIA
Subjt:  VANRTAISRALDFSRLSSSFIRSFSTSSPSTSSSNPNASPASSKKKRR-KKKNLFEVVQFLPNWGVGYHVAKAHWDEISYQITKINLYKSGTHGKAWGIA

Query:  HKDGTPIAEAPKKISGVHKRCWKYIASLPSSGESNASAELQTS
        HKDGTPIAEAPKKISGVHKRCWKYIASLP SGESN SAE+QTS
Subjt:  HKDGTPIAEAPKKISGVHKRCWKYIASLPSSGESNASAELQTS

TrEMBL top hitse value%identityAlignment
A0A0A0KH76 Uncharacterized protein1.7e-6589.66Show/hide
Query:  MAVANRTAISRALDFSRLSSSFIRSFSTSSPSTSSSNPNASPASSK-KKRRKKKNLFEVVQFLPNWGVGYHVAKAHWDEISYQITKINLYKSGTHGKAWG
        MAVANRTAISRALDFSRLSSSF+R+FS+SSPSTSSSNPNASP SS+ K+R+KKKNLFEVVQFLPNWGVGYHVAK+HWDEISYQITKINLYKSGTHGKAWG
Subjt:  MAVANRTAISRALDFSRLSSSFIRSFSTSSPSTSSSNPNASPASSK-KKRRKKKNLFEVVQFLPNWGVGYHVAKAHWDEISYQITKINLYKSGTHGKAWG

Query:  IAHKDGTPIAEAPKKISGVHKRCWKYIASLPSSGESNASAELQTS
        IAHK+GTPI EAPKKISGVHKRCWKYIASLP SGES  SAE+QTS
Subjt:  IAHKDGTPIAEAPKKISGVHKRCWKYIASLPSSGESNASAELQTS

A0A1S3CKN2 uncharacterized protein LOC1035020497.2e-6487.59Show/hide
Query:  MAVANRTAISRALDFSRLSSSFIRSFSTSSPSTSSSNPNASPASSK-KKRRKKKNLFEVVQFLPNWGVGYHVAKAHWDEISYQITKINLYKSGTHGKAWG
        MAVANRTAISRALDFSRLSSSFIR+F++SSPSTSSSNPNASP+SS+ K+R+KKKNLFEV+QFLPNWGVGYHVAK+HWDEISYQITKINLYKSGTHGKAWG
Subjt:  MAVANRTAISRALDFSRLSSSFIRSFSTSSPSTSSSNPNASPASSK-KKRRKKKNLFEVVQFLPNWGVGYHVAKAHWDEISYQITKINLYKSGTHGKAWG

Query:  IAHKDGTPIAEAPKKISGVHKRCWKYIASLPSSGESNASAELQTS
        IAHK+G PI EAPKKISGVHKRCWKYIASLP  GES  SAE+QTS
Subjt:  IAHKDGTPIAEAPKKISGVHKRCWKYIASLPSSGESNASAELQTS

A0A5A7V0Y6 Uncharacterized protein7.2e-6487.59Show/hide
Query:  MAVANRTAISRALDFSRLSSSFIRSFSTSSPSTSSSNPNASPASSK-KKRRKKKNLFEVVQFLPNWGVGYHVAKAHWDEISYQITKINLYKSGTHGKAWG
        MAVANRTAISRALDFSRLSSSFIR+F++SSPSTSSSNPNASP+SS+ K+R+KKKNLFEV+QFLPNWGVGYHVAK+HWDEISYQITKINLYKSGTHGKAWG
Subjt:  MAVANRTAISRALDFSRLSSSFIRSFSTSSPSTSSSNPNASPASSK-KKRRKKKNLFEVVQFLPNWGVGYHVAKAHWDEISYQITKINLYKSGTHGKAWG

Query:  IAHKDGTPIAEAPKKISGVHKRCWKYIASLPSSGESNASAELQTS
        IAHK+G PI EAPKKISGVHKRCWKYIASLP  GES  SAE+QTS
Subjt:  IAHKDGTPIAEAPKKISGVHKRCWKYIASLPSSGESNASAELQTS

A0A6J1FVV3 uncharacterized protein LOC1114489483.7e-6084.14Show/hide
Query:  MAVANRTAISRALDFSRLSSSFIRSFSTSSPSTSSSNPNASPASSK-KKRRKKKNLFEVVQFLPNWGVGYHVAKAHWDEISYQITKINLYKSGTHGKAWG
        M+VANR+AIS AL FSRLSSSF RSF+TSSPS S+ NPNA  AS+K K+R+KKKNLFEVVQFLPNWGVGYHVAKAHWDEISYQITK+NLYKSGTHGKAWG
Subjt:  MAVANRTAISRALDFSRLSSSFIRSFSTSSPSTSSSNPNASPASSK-KKRRKKKNLFEVVQFLPNWGVGYHVAKAHWDEISYQITKINLYKSGTHGKAWG

Query:  IAHKDGTPIAEAPKKISGVHKRCWKYIASLPSSGESNASAELQTS
        +AHKDGT IAEAPKKISGVHKRCWKYIASLP SG+S+ SAE+QTS
Subjt:  IAHKDGTPIAEAPKKISGVHKRCWKYIASLPSSGESNASAELQTS

A0A6J1KZ28 uncharacterized protein LOC1115000231.2e-5880.13Show/hide
Query:  MAVANRTAISRALDFSRLSSSFIRSFSTSSPSTSSSNPNASPASSKKKRR-KKKNLFEVVQFLPNWGVGYHVAKAHWDEISYQITKINLYKSGTHGKAWG
        MAVANRT ISRALDFSRL+SSFIR+FSTS+ STSSS+P+AS A+SK KRR KKKNLFEV+QFLPNWGVGYHVAKAHWDEISYQITKINLYK+GTHGKAWG
Subjt:  MAVANRTAISRALDFSRLSSSFIRSFSTSSPSTSSSNPNASPASSKKKRR-KKKNLFEVVQFLPNWGVGYHVAKAHWDEISYQITKINLYKSGTHGKAWG

Query:  IAHKDGTPIAEAPKKISGVHKRCWKYIASLPSS-----------GESNASAELQTS
        IAHK+G PIAEAPKKISGVHKRCWKYI SL  S           GESN SAE+QTS
Subjt:  IAHKDGTPIAEAPKKISGVHKRCWKYIASLPSS-----------GESNASAELQTS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G52370.1 unknown protein3.8e-4160.96Show/hide
Query:  MAVANRTAISR--ALDFSRLSSSFIRSFSTSSPSTSSSNPNASPASSKKKRRKKKNLFEVVQFLPNWGVGYHVAKAHWDEISYQITKINLYKSGTHGKAW
        M + NR AISR   +   RLS + +R+FS    + +S NP++   SSK KRRKKKNL EV QFLPNWG+GYH+AKAHW+ ISY+ITKINLYK G HGKAW
Subjt:  MAVANRTAISR--ALDFSRLSSSFIRSFSTSSPSTSSSNPNASPASSKKKRRKKKNLFEVVQFLPNWGVGYHVAKAHWDEISYQITKINLYKSGTHGKAW

Query:  GIAHKDGTPIAEAPKKISGVHKRCWKYIASLPSSGESNASAELQTS
        GI HKDG   AEAPKKISGVHKRCWKYI +L  +  +  SA +Q +
Subjt:  GIAHKDGTPIAEAPKKISGVHKRCWKYIASLPSSGESNASAELQTS

AT5G58990.1 unknown protein1.1e-4059.18Show/hide
Query:  MAVANRTAISR--ALDFSRLSSSFIRSFSTS-SPSTSSSNPNASPASSKKKRRKKKNLFEVVQFLPNWGVGYHVAKAHWDEISYQITKINLYKSGTHGKA
        M + NR AISR   +    LS S +R+FS + S +++ ++ N S  S+K KRRKKKNL EV QFLPNWG+GYH+AKAHW+ ISY+ITKINLYK G HGKA
Subjt:  MAVANRTAISR--ALDFSRLSSSFIRSFSTS-SPSTSSSNPNASPASSKKKRRKKKNLFEVVQFLPNWGVGYHVAKAHWDEISYQITKINLYKSGTHGKA

Query:  WGIAHKDGTPIAEAPKKISGVHKRCWKYIASLPSSGESNASAELQTS
        WGI HKDG   AEAPKKISGVHKRCWKYI +L  +  +  +A++Q +
Subjt:  WGIAHKDGTPIAEAPKKISGVHKRCWKYIASLPSSGESNASAELQTS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGTCGCCAACAGAACTGCGATCAGTCGAGCCCTAGATTTCTCCAGGTTATCTTCTAGCTTTATCAGAAGCTTCAGCACCTCTTCGCCCTCGACCTCCTCTTCGAA
CCCCAATGCCTCGCCTGCTTCGAGTAAAAAGAAACGGAGGAAGAAGAAGAACCTGTTCGAAGTTGTTCAGTTTTTGCCCAATTGGGGAGTAGGATACCACGTCGCCAAGG
CTCACTGGGATGAAATATCGTACCAGATCACCAAAATCAATCTGTACAAGAGTGGCACGCACGGCAAGGCATGGGGCATTGCTCATAAAGATGGCACGCCCATTGCTGAA
GCTCCAAAGAAAATTAGCGGAGTTCACAAGCGCTGTTGGAAGTATATCGCTAGCTTGCCGAGTTCGGGAGAAAGCAACGCATCAGCTGAACTTCAAACTTCATGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTGTCGCCAACAGAACTGCGATCAGTCGAGCCCTAGATTTCTCCAGGTTATCTTCTAGCTTTATCAGAAGCTTCAGCACCTCTTCGCCCTCGACCTCCTCTTCGAA
CCCCAATGCCTCGCCTGCTTCGAGTAAAAAGAAACGGAGGAAGAAGAAGAACCTGTTCGAAGTTGTTCAGTTTTTGCCCAATTGGGGAGTAGGATACCACGTCGCCAAGG
CTCACTGGGATGAAATATCGTACCAGATCACCAAAATCAATCTGTACAAGAGTGGCACGCACGGCAAGGCATGGGGCATTGCTCATAAAGATGGCACGCCCATTGCTGAA
GCTCCAAAGAAAATTAGCGGAGTTCACAAGCGCTGTTGGAAGTATATCGCTAGCTTGCCGAGTTCGGGAGAAAGCAACGCATCAGCTGAACTTCAAACTTCATGA
Protein sequenceShow/hide protein sequence
MAVANRTAISRALDFSRLSSSFIRSFSTSSPSTSSSNPNASPASSKKKRRKKKNLFEVVQFLPNWGVGYHVAKAHWDEISYQITKINLYKSGTHGKAWGIAHKDGTPIAE
APKKISGVHKRCWKYIASLPSSGESNASAELQTS