CuGenDBv2

Gene ID	HG10001535
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	30S ribosomal protein S18
Genome location	Chr09:17934060..17935532
RNA-Seq Expression	HG10001535
Synteny	HG10001535
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0005737 - cytoplasm (cellular component) GO:0005840 - ribosome (cellular component) GO:0003723 - RNA binding (molecular function) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	IPR001648 - Ribosomal protein S18 IPR036870 - Ribosomal protein S18 superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004143160.1 uncharacterized protein LOC101213524 [Cucumis sativus]

4.7e-49

87.6

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Query:  IQDLDLTKPGVRKPPKWEEFQVTTEEALRKADFRNVRFLANFITEAGIMKKRSMTGISAKAQRKVAREIKTARAFGLMPFTTMGTKSFIFGKTMENLDSD
        I+DLDLTKPG RKPPK  EFQVTTEEALRKADFRNVRFLANFITEAGI+ KRS T ISAKAQRKVAREIKTARAFGLMPFTTMGTKSF FGK+MENLD+D
Subjt:  IQDLDLTKPGVRKPPKWEEFQVTTEEALRKADFRNVRFLANFITEAGIMKKRSMTGISAKAQRKVAREIKTARAFGLMPFTTMGTKSFIFGKTMENLDSD

Query:  YEYEVFDN-NADADGGRPLRS
        +EYEVFDN N DADGG PLRS
Subjt:  YEYEVFDN-NADADGGRPLRS

XP_008464035.1 PREDICTED: uncharacterized protein LOC103502018 [Cucumis melo]

1.0e-48

86.78

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Query:  IQDLDLTKPGVRKPPKWEEFQVTTEEALRKADFRNVRFLANFITEAGIMKKRSMTGISAKAQRKVAREIKTARAFGLMPFTTMGTKSFIFGKTMENLDSD
        ++DLDLT+PGVRKPPK   FQVTTEEALRKADFRNVRFLANFITEAGI+ KRS T ISAKAQRKVAREIKTARAFGLMPFTTMGTKSFIFGK+MENLD+D
Subjt:  IQDLDLTKPGVRKPPKWEEFQVTTEEALRKADFRNVRFLANFITEAGIMKKRSMTGISAKAQRKVAREIKTARAFGLMPFTTMGTKSFIFGKTMENLDSD

Query:  YEYEVFDN-NADADGGRPLRS
        +EYEVFDN N DADGGR LRS
Subjt:  YEYEVFDN-NADADGGRPLRS

XP_022148322.1 uncharacterized protein LOC111017003 [Momordica charantia]

7.9e-49

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Query:  IQDLDLTKPGVRKPPKWEEFQVTTEEALRKADFRNVRFLANFITEAGIMKKRSMTGISAKAQRKVAREIKTARAFGLMPFTTMGTKSFIFGKTMENLDSD
        I+DLDL KPGVRKPPK  EFQVTTEE L+KADFRNVRFLANFIT+AGI+ KRS TGISAKAQRKVAREIKTARAFGLMPFTTMGTK+F+FGKTME+LD D
Subjt:  IQDLDLTKPGVRKPPKWEEFQVTTEEALRKADFRNVRFLANFITEAGIMKKRSMTGISAKAQRKVAREIKTARAFGLMPFTTMGTKSFIFGKTMENLDSD

Query:  YEYEVFDNNADADGGRPLRS
        YEYEVFDN ADAD G PL S
Subjt:  YEYEVFDNNADADGGRPLRS

XP_022947026.1 uncharacterized protein LOC111451027 isoform X1 [Cucurbita moschata]

2.1e-49

88.03

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Query:  IQDLDLTKPGVRKPPKWEEFQVTTEEALRKADFRNVRFLANFITEAGIMKKRSMTGISAKAQRKVAREIKTARAFGLMPFTTMGTKSFIFGKTMENLDSD
        I+DLDLTKPGVRKPPK  EFQVTTEE LRKADFRNVRFLANFIT+AGI+ KRS TGISAKAQRKVAREIKTARAFGLMPFTTMGTKSF+FGKTME LD D
Subjt:  IQDLDLTKPGVRKPPKWEEFQVTTEEALRKADFRNVRFLANFITEAGIMKKRSMTGISAKAQRKVAREIKTARAFGLMPFTTMGTKSFIFGKTMENLDSD

Query:  YEYEVFDNNADADGGRP
        YEYEVF+NN DAD GRP
Subjt:  YEYEVFDNNADADGGRP

XP_023532312.1 uncharacterized protein LOC111794503 [Cucurbita pepo subsp. pepo]

2.1e-49

88.03

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Query:  IQDLDLTKPGVRKPPKWEEFQVTTEEALRKADFRNVRFLANFITEAGIMKKRSMTGISAKAQRKVAREIKTARAFGLMPFTTMGTKSFIFGKTMENLDSD
        I+DLDLTKPGVRKPPK  EFQVTTEE LRKADFRNVRFLANFIT+AGI+ KRS TGISAKAQRKVAREIKTARAFGLMPFTTMGTKSF+FGKTME LD D
Subjt:  IQDLDLTKPGVRKPPKWEEFQVTTEEALRKADFRNVRFLANFITEAGIMKKRSMTGISAKAQRKVAREIKTARAFGLMPFTTMGTKSFIFGKTMENLDSD

Query:  YEYEVFDNNADADGGRP
        YEYEVF+NN DAD GRP
Subjt:  YEYEVFDNNADADGGRP

TrEMBL top hits

e value

%identity

Alignment

A0A1S3CM21 uncharacterized protein LOC103502018

5.0e-49

86.78

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Query:  IQDLDLTKPGVRKPPKWEEFQVTTEEALRKADFRNVRFLANFITEAGIMKKRSMTGISAKAQRKVAREIKTARAFGLMPFTTMGTKSFIFGKTMENLDSD
        ++DLDLT+PGVRKPPK   FQVTTEEALRKADFRNVRFLANFITEAGI+ KRS T ISAKAQRKVAREIKTARAFGLMPFTTMGTKSFIFGK+MENLD+D
Subjt:  IQDLDLTKPGVRKPPKWEEFQVTTEEALRKADFRNVRFLANFITEAGIMKKRSMTGISAKAQRKVAREIKTARAFGLMPFTTMGTKSFIFGKTMENLDSD

Query:  YEYEVFDN-NADADGGRPLRS
        +EYEVFDN N DADGGR LRS
Subjt:  YEYEVFDN-NADADGGRPLRS

A0A5A7V7I3 Putative Ribosomal protein S18

5.0e-49

86.78

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Query:  IQDLDLTKPGVRKPPKWEEFQVTTEEALRKADFRNVRFLANFITEAGIMKKRSMTGISAKAQRKVAREIKTARAFGLMPFTTMGTKSFIFGKTMENLDSD
        ++DLDLT+PGVRKPPK   FQVTTEEALRKADFRNVRFLANFITEAGI+ KRS T ISAKAQRKVAREIKTARAFGLMPFTTMGTKSFIFGK+MENLD+D
Subjt:  IQDLDLTKPGVRKPPKWEEFQVTTEEALRKADFRNVRFLANFITEAGIMKKRSMTGISAKAQRKVAREIKTARAFGLMPFTTMGTKSFIFGKTMENLDSD

Query:  YEYEVFDN-NADADGGRPLRS
        +EYEVFDN N DADGGR LRS
Subjt:  YEYEVFDN-NADADGGRPLRS

A0A6J1D4R9 uncharacterized protein LOC111017003

3.8e-49

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Query:  IQDLDLTKPGVRKPPKWEEFQVTTEEALRKADFRNVRFLANFITEAGIMKKRSMTGISAKAQRKVAREIKTARAFGLMPFTTMGTKSFIFGKTMENLDSD
        I+DLDL KPGVRKPPK  EFQVTTEE L+KADFRNVRFLANFIT+AGI+ KRS TGISAKAQRKVAREIKTARAFGLMPFTTMGTK+F+FGKTME+LD D
Subjt:  IQDLDLTKPGVRKPPKWEEFQVTTEEALRKADFRNVRFLANFITEAGIMKKRSMTGISAKAQRKVAREIKTARAFGLMPFTTMGTKSFIFGKTMENLDSD

Query:  YEYEVFDNNADADGGRPLRS
        YEYEVFDN ADAD G PL S
Subjt:  YEYEVFDNNADADGGRPLRS

A0A6J1G586 uncharacterized protein LOC111451027 isoform X1

1.0e-49

88.03

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Query:  IQDLDLTKPGVRKPPKWEEFQVTTEEALRKADFRNVRFLANFITEAGIMKKRSMTGISAKAQRKVAREIKTARAFGLMPFTTMGTKSFIFGKTMENLDSD
        I+DLDLTKPGVRKPPK  EFQVTTEE LRKADFRNVRFLANFIT+AGI+ KRS TGISAKAQRKVAREIKTARAFGLMPFTTMGTKSF+FGKTME LD D
Subjt:  IQDLDLTKPGVRKPPKWEEFQVTTEEALRKADFRNVRFLANFITEAGIMKKRSMTGISAKAQRKVAREIKTARAFGLMPFTTMGTKSFIFGKTMENLDSD

Query:  YEYEVFDNNADADGGRP
        YEYEVF+NN DAD GRP
Subjt:  YEYEVFDNNADADGGRP

A0A6J1JHF0 uncharacterized protein LOC111484513

1.2e-47

85.83

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Query:  IQDLDLTKPGVRKPPKWEEFQVTTEEALRKADFRNVRFLANFITEAGIMKKRSMTGISAKAQRKVAREIKTARAFGLMPFTTMGTKSFIFGKTMENLDSD
        I+DLDLTKPGVRKPPK  EFQVTTEE LRKADFRNVRFLANFIT+AGI+ KRS T ISAKAQRKVAREIKTARAFGLMPFTTMGTKSF+FGKTME+LD D
Subjt:  IQDLDLTKPGVRKPPKWEEFQVTTEEALRKADFRNVRFLANFITEAGIMKKRSMTGISAKAQRKVAREIKTARAFGLMPFTTMGTKSFIFGKTMENLDSD

Query:  YEYEVFDNNADADGGRPLRS
        YEYEVFDNN   DGG PL S
Subjt:  YEYEVFDNNADADGGRPLRS

SwissProt top hits

e value

%identity

Alignment

A5F3K5 30S ribosomal protein S18

3.0e-06

46.55

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Query:  TEEALRKADFRNVRFLANFITEAGIMKKRSMTGISAKAQRKVAREIKTARAFGLMPFT
        T E +++ D+++V  L N+ITEAG +    +TG SAK QR++AR IK AR   L+P+T
Subjt:  TEEALRKADFRNVRFLANFITEAGIMKKRSMTGISAKAQRKVAREIKTARAFGLMPFT

O66476 30S ribosomal protein S18

1.7e-06

47.27

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Query:  EALRKADFRNVRFLANFITEAGIMKKRSMTGISAKAQRKVAREIKTARAFGLMPF
        E  R+ D++N   L NF+TE G +K R  TG+ AK QR++A +IK AR  GL+P+
Subjt:  EALRKADFRNVRFLANFITEAGIMKKRSMTGISAKAQRKVAREIKTARAFGLMPF

P62659 30S ribosomal protein S18

1.7e-06

41.89

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Query:  KPGVRKPPKWEEFQVTTEEALRKADFRNVRFLANFITEAGIMKKRSMTGISAKAQRKVAREIKTARAFGLMPFT
        K   R+P +  + + T  E     D+RNV  L  F++E G +  R  TG+SAK QR +A+ IK AR  GL+PFT
Subjt:  KPGVRKPPKWEEFQVTTEEALRKADFRNVRFLANFITEAGIMKKRSMTGISAKAQRKVAREIKTARAFGLMPFT

Q5SLQ0 30S ribosomal protein S18

1.7e-06

41.89

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Query:  KPGVRKPPKWEEFQVTTEEALRKADFRNVRFLANFITEAGIMKKRSMTGISAKAQRKVAREIKTARAFGLMPFT
        K   R+P +  + + T  E     D+RNV  L  F++E G +  R  TG+SAK QR +A+ IK AR  GL+PFT
Subjt:  KPGVRKPPKWEEFQVTTEEALRKADFRNVRFLANFITEAGIMKKRSMTGISAKAQRKVAREIKTARAFGLMPFT

Q9KUZ0 30S ribosomal protein S18

3.0e-06

46.55

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Query:  TEEALRKADFRNVRFLANFITEAGIMKKRSMTGISAKAQRKVAREIKTARAFGLMPFT
        T E +++ D+++V  L N+ITEAG +    +TG SAK QR++AR IK AR   L+P+T
Subjt:  TEEALRKADFRNVRFLANFITEAGIMKKRSMTGISAKAQRKVAREIKTARAFGLMPFT

Arabidopsis top hits

e value

%identity

Alignment

AT1G07210.1 Ribosomal protein S18

6.3e-36

77.89

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Query:  QVTTEEALRKADFRNVRFLANFITEAGIMKKRSMTGISAKAQRKVAREIKTARAFGLMPFTTMGTKSFIFGKTMENLDSDYEYEVFDNNADADGG
        +VTTEE L+ ADFRNVRFLANFITEAGI+ KR  TGISAKAQRK+AREIKTARAFGLMPFTTMGTK+F FGKTMEN D D+EYEV D++ + D G
Subjt:  QVTTEEALRKADFRNVRFLANFITEAGIMKKRSMTGISAKAQRKVAREIKTARAFGLMPFTTMGTKSFIFGKTMENLDSDYEYEVFDNNADADGG

Sequences

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CDS sequence

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ATGTTTCCTTCAAGAAGCATCCTAGGCGAGTTTTATGGCCAACTGTGTCTGGATGAATGTATACAGGATCTGGATCTAACAAAGCCAGGTGTACGTAAGCCCCCCAAATG
GGAAGAGTTTCAGGTGACAACGGAGGAGGCCTTACGAAAAGCTGATTTCAGGAATGTTAGGTTTCTGGCGAACTTTATAACTGAGGCCGGGATCATGAAGAAGAGGAGTA
TGACAGGTATTAGTGCCAAGGCACAGAGGAAAGTCGCACGCGAGATCAAAACTGCACGAGCATTTGGCTTAATGCCCTTCACAACAATGGGAACGAAATCATTTATTTTT
GGCAAAACCATGGAGAATCTTGATAGCGACTATGAGTACGAAGTTTTTGACAATAATGCTGATGCAGATGGAGGACGCCCACTCAGATCCCAAAGACCACGCTTTTAG

mRNA sequence

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Protein sequence

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MFPSRSILGEFYGQLCLDECIQDLDLTKPGVRKPPKWEEFQVTTEEALRKADFRNVRFLANFITEAGIMKKRSMTGISAKAQRKVAREIKTARAFGLMPFTTMGTKSFIF
GKTMENLDSDYEYEVFDNNADADGGRPLRSQRPRF

HG10001535 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome