; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10001536 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10001536
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description30S ribosomal protein S18
Genome locationChr09:17935708..17936412
RNA-Seq ExpressionHG10001536
SyntenyHG10001536
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005763 - mitochondrial small ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0070181 - small ribosomal subunit rRNA binding (molecular function)
InterPro domainsIPR001648 - Ribosomal protein S18


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6570652.1 hypothetical protein SDJN03_29567, partial [Cucurbita argyrosperma subsp. sororia]2.0e-6688.24Show/hide
Query:  MRTVQVALRTLGGGLSRRLKQPSVLRNLSTNAARDSVFDGDKGKPDSFESADDFERRIFGGVSLGGSGNDAFFEKLDRLGKPRERIGSRLSGGNNFHTLD
        MRTVQVALRTLGGGLSRR KQPSVLRNLSTNAARDS FD DKGKPDSFESADDFERRIFGGVS G  GNDAFFEKLDR+GKPRERIGSRLSGGNNF +L 
Subjt:  MRTVQVALRTLGGGLSRRLKQPSVLRNLSTNAARDSVFDGDKGKPDSFESADDFERRIFGGVSLGGSGNDAFFEKLDRLGKPRERIGSRLSGGNNFHTLD

Query:  GLQDNINTLSDGMDGKLKKASTYFEFDPEEIEKPDYAFRADMSFKPRSTYEIK
        GL DN+NTLSDGMDGKLKKASTYFEFD EEI K DY FRADMSFKP STYE+K
Subjt:  GLQDNINTLSDGMDGKLKKASTYFEFDPEEIEKPDYAFRADMSFKPRSTYEIK

XP_022943865.1 uncharacterized protein LOC111448465 [Cucurbita moschata]4.1e-6788.89Show/hide
Query:  MRTVQVALRTLGGGLSRRLKQPSVLRNLSTNAARDSVFDGDKGKPDSFESADDFERRIFGGVSLGGSGNDAFFEKLDRLGKPRERIGSRLSGGNNFHTLD
        MRTVQVALRTLGGGLSRR KQPSVLRNLSTNAARDS FD DKGKPDSFESADDFERRIFGGVS G SGNDAFFEKLDR+GKPRERIGSRLSGGNNF +L 
Subjt:  MRTVQVALRTLGGGLSRRLKQPSVLRNLSTNAARDSVFDGDKGKPDSFESADDFERRIFGGVSLGGSGNDAFFEKLDRLGKPRERIGSRLSGGNNFHTLD

Query:  GLQDNINTLSDGMDGKLKKASTYFEFDPEEIEKPDYAFRADMSFKPRSTYEIK
        GL DN+NTLSDGMDGKLKKASTYFEFD EEI K DY FRADMSFKP STYE+K
Subjt:  GLQDNINTLSDGMDGKLKKASTYFEFDPEEIEKPDYAFRADMSFKPRSTYEIK

XP_022986919.1 uncharacterized protein LOC111484513 [Cucurbita maxima]1.2e-6689.54Show/hide
Query:  MRTVQVALRTLGGGLSRRLKQPSVLRNLSTNAARDSVFDGDKGKPDSFESADDFERRIFGGVSLGGSGNDAFFEKLDRLGKPRERIGSRLSGGNNFHTLD
        M TVQVALRTLGGGLSRR KQPSVLRNLSTNAARDS FD DKGKPDSFESADDFERRIFGGVS G SGNDAFFEKLDRLGKPRERIGSRLSGGNNF  L 
Subjt:  MRTVQVALRTLGGGLSRRLKQPSVLRNLSTNAARDSVFDGDKGKPDSFESADDFERRIFGGVSLGGSGNDAFFEKLDRLGKPRERIGSRLSGGNNFHTLD

Query:  GLQDNINTLSDGMDGKLKKASTYFEFDPEEIEKPDYAFRADMSFKPRSTYEIK
        GL DN+NTLSDGMDGKLKKASTYFEFD EEI K DY FRADMSFKP STYEIK
Subjt:  GLQDNINTLSDGMDGKLKKASTYFEFDPEEIEKPDYAFRADMSFKPRSTYEIK

XP_023512473.1 uncharacterized protein LOC111777218 [Cucurbita pepo subsp. pepo]2.0e-6688.89Show/hide
Query:  MRTVQVALRTLGGGLSRRLKQPSVLRNLSTNAARDSVFDGDKGKPDSFESADDFERRIFGGVSLGGSGNDAFFEKLDRLGKPRERIGSRLSGGNNFHTLD
        MRTVQVALRTLG GLSRR KQPSVLRNLSTNAARDS FD DKGKPDSFESADDFERRIFGGVS G SGNDAFFEKLDRLGKPRERIGSRLSGGNNF +L 
Subjt:  MRTVQVALRTLGGGLSRRLKQPSVLRNLSTNAARDSVFDGDKGKPDSFESADDFERRIFGGVSLGGSGNDAFFEKLDRLGKPRERIGSRLSGGNNFHTLD

Query:  GLQDNINTLSDGMDGKLKKASTYFEFDPEEIEKPDYAFRADMSFKPRSTYEIK
        GL DN+NTLSDGMDGKLKKASTYFEFD EEI K DY FRADMSFKP STYE+K
Subjt:  GLQDNINTLSDGMDGKLKKASTYFEFDPEEIEKPDYAFRADMSFKPRSTYEIK

XP_038901583.1 uncharacterized protein LOC120088393 [Benincasa hispida]3.1e-6786.93Show/hide
Query:  MRTVQVALRTLGGGLSRRLKQPSVLRNLSTNAARDSVFDGDKGKPDSFESADDFERRIFGGVSLGGSGNDAFFEKLDRLGKPRERIGSRLSGGNNFHTLD
        MRTVQVALRTLGGGLSRRLKQPSVLRNLSTNAARDS FD DKGKPDSFES DDFE RIFGGVS+G SGNDAFFEKLDRLGKPRERIGSR SGGNNFH L 
Subjt:  MRTVQVALRTLGGGLSRRLKQPSVLRNLSTNAARDSVFDGDKGKPDSFESADDFERRIFGGVSLGGSGNDAFFEKLDRLGKPRERIGSRLSGGNNFHTLD

Query:  GLQDNINTLSDGMDGKLKKASTYFEFDPEEIEKPDYAFRADMSFKPRSTYEIK
        GL+D++ TLSDGMDGKLKKASTYFE+DPEEI + +Y FRADMSFKP STYEIK
Subjt:  GLQDNINTLSDGMDGKLKKASTYFEFDPEEIEKPDYAFRADMSFKPRSTYEIK

TrEMBL top hitse value%identityAlignment
A0A5A7V7I3 Putative Ribosomal protein S181.3e-6383.77Show/hide
Query:  MRTVQVALRTLGGGLSRRLKQPSVLRNLSTNAARDSVFDGD-KGKPDSFESADDFERRIFGGVSLGGSGNDAFFEKLDRLGKPRERIGSRLSGGNNFHTL
        MRTVQVALRTLGGGLSR LKQPSVLRNLSTNAAR S FD D KG PDSFE+ADDFERRIFGGVS+ GSGNDAFFEK DRLGKPRERIGS+LSGGNNF  L
Subjt:  MRTVQVALRTLGGGLSRRLKQPSVLRNLSTNAARDSVFDGD-KGKPDSFESADDFERRIFGGVSLGGSGNDAFFEKLDRLGKPRERIGSRLSGGNNFHTL

Query:  DGLQDNINTLSDGMDGKLKKASTYFEFDPEEIEKPDYAFRADMSFKPRSTYEIK
          L+DN +TLSDGMDGKLKKASTYFE DP+EIEK DYAFRADMSF+P STY +K
Subjt:  DGLQDNINTLSDGMDGKLKKASTYFEFDPEEIEKPDYAFRADMSFKPRSTYEIK

A0A6J1FYC1 uncharacterized protein LOC1114484652.0e-6788.89Show/hide
Query:  MRTVQVALRTLGGGLSRRLKQPSVLRNLSTNAARDSVFDGDKGKPDSFESADDFERRIFGGVSLGGSGNDAFFEKLDRLGKPRERIGSRLSGGNNFHTLD
        MRTVQVALRTLGGGLSRR KQPSVLRNLSTNAARDS FD DKGKPDSFESADDFERRIFGGVS G SGNDAFFEKLDR+GKPRERIGSRLSGGNNF +L 
Subjt:  MRTVQVALRTLGGGLSRRLKQPSVLRNLSTNAARDSVFDGDKGKPDSFESADDFERRIFGGVSLGGSGNDAFFEKLDRLGKPRERIGSRLSGGNNFHTLD

Query:  GLQDNINTLSDGMDGKLKKASTYFEFDPEEIEKPDYAFRADMSFKPRSTYEIK
        GL DN+NTLSDGMDGKLKKASTYFEFD EEI K DY FRADMSFKP STYE+K
Subjt:  GLQDNINTLSDGMDGKLKKASTYFEFDPEEIEKPDYAFRADMSFKPRSTYEIK

A0A6J1G586 uncharacterized protein LOC111451027 isoform X14.6e-6483.66Show/hide
Query:  MRTVQVALRTLGGGLSRRLKQPSVLRNLSTNAARDSVFDGDKGKPDSFESADDFERRIFGGVSLGGSGNDAFFEKLDRLGKPRERIGSRLSGGNNFHTLD
        MR VQVA RT+GGG++R+ KQPS LRNLSTNAARD  FD D+GK +SFESADDFERRIFGGVSLG SGNDAFFEKLDRLGKPRERIGSRLSGGNNF  L 
Subjt:  MRTVQVALRTLGGGLSRRLKQPSVLRNLSTNAARDSVFDGDKGKPDSFESADDFERRIFGGVSLGGSGNDAFFEKLDRLGKPRERIGSRLSGGNNFHTLD

Query:  GLQDNINTLSDGMDGKLKKASTYFEFDPEEIEKPDYAFRADMSFKPRSTYEIK
        G++DN+NTLSDGMDGKLKKASTYFEFDPEEI K DY FRADMSFKP STYEIK
Subjt:  GLQDNINTLSDGMDGKLKKASTYFEFDPEEIEKPDYAFRADMSFKPRSTYEIK

A0A6J1G5B3 uncharacterized protein LOC111451027 isoform X24.6e-6483.66Show/hide
Query:  MRTVQVALRTLGGGLSRRLKQPSVLRNLSTNAARDSVFDGDKGKPDSFESADDFERRIFGGVSLGGSGNDAFFEKLDRLGKPRERIGSRLSGGNNFHTLD
        MR VQVA RT+GGG++R+ KQPS LRNLSTNAARD  FD D+GK +SFESADDFERRIFGGVSLG SGNDAFFEKLDRLGKPRERIGSRLSGGNNF  L 
Subjt:  MRTVQVALRTLGGGLSRRLKQPSVLRNLSTNAARDSVFDGDKGKPDSFESADDFERRIFGGVSLGGSGNDAFFEKLDRLGKPRERIGSRLSGGNNFHTLD

Query:  GLQDNINTLSDGMDGKLKKASTYFEFDPEEIEKPDYAFRADMSFKPRSTYEIK
        G++DN+NTLSDGMDGKLKKASTYFEFDPEEI K DY FRADMSFKP STYEIK
Subjt:  GLQDNINTLSDGMDGKLKKASTYFEFDPEEIEKPDYAFRADMSFKPRSTYEIK

A0A6J1JHF0 uncharacterized protein LOC1114845135.8e-6789.54Show/hide
Query:  MRTVQVALRTLGGGLSRRLKQPSVLRNLSTNAARDSVFDGDKGKPDSFESADDFERRIFGGVSLGGSGNDAFFEKLDRLGKPRERIGSRLSGGNNFHTLD
        M TVQVALRTLGGGLSRR KQPSVLRNLSTNAARDS FD DKGKPDSFESADDFERRIFGGVS G SGNDAFFEKLDRLGKPRERIGSRLSGGNNF  L 
Subjt:  MRTVQVALRTLGGGLSRRLKQPSVLRNLSTNAARDSVFDGDKGKPDSFESADDFERRIFGGVSLGGSGNDAFFEKLDRLGKPRERIGSRLSGGNNFHTLD

Query:  GLQDNINTLSDGMDGKLKKASTYFEFDPEEIEKPDYAFRADMSFKPRSTYEIK
        GL DN+NTLSDGMDGKLKKASTYFEFD EEI K DY FRADMSFKP STYEIK
Subjt:  GLQDNINTLSDGMDGKLKKASTYFEFDPEEIEKPDYAFRADMSFKPRSTYEIK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G07210.1 Ribosomal protein S183.3e-0629.33Show/hide
Query:  MRTVQVALRTLGGGLSRRLKQPSVLRNLSTNAARDSVFDGDKGKPDSFESADDFERRIFGGVSLGGSGNDAFFEKLDRLGKPRERI-------GSRLSGG
        M   + A R+L      R  +P V R+L+TNA  D           SF+S+D+ +  +FG  +     ++ FF+ L +  K +          GSR SGG
Subjt:  MRTVQVALRTLGGGLSRRLKQPSVLRNLSTNAARDSVFDGDKGKPDSFESADDFERRIFGGVSLGGSGNDAFFEKLDRLGKPRERI-------GSRLSGG

Query:  NNFHTLDGLQDNINTLSDGMDGKLKKASTYFEFDPEEIEKPDYAFRADMS
         +        +  +  SDG+DGKLK+A+  +  D  +  K +Y+FR D +
Subjt:  NNFHTLDGLQDNINTLSDGMDGKLKKASTYFEFDPEEIEKPDYAFRADMS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGAACCGTTCAGGTTGCTTTGCGAACCCTTGGCGGTGGCCTATCGCGGAGATTAAAGCAACCTTCTGTGCTCAGAAACCTTTCCACAAACGCCGCTCGTGATAGTGT
CTTTGATGGTGATAAGGGAAAACCTGATTCATTTGAGTCTGCTGATGACTTCGAACGTCGGATATTTGGGGGTGTTTCTTTGGGCGGTTCCGGAAATGATGCTTTCTTTG
AGAAGCTTGATAGACTTGGCAAACCTCGTGAAAGAATAGGCTCGAGACTGAGTGGAGGAAACAATTTTCATACGTTGGATGGTCTTCAAGATAATATTAACACGCTGTCA
GATGGGATGGATGGCAAGTTGAAGAAAGCTTCCACTTATTTTGAGTTTGATCCCGAGGAAATAGAAAAACCTGATTATGCTTTCAGAGCAGATATGTCTTTTAAGCCTAG
ATCAACATACGAAATCAAGGCATGTAGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGAACCGTTCAGGTTGCTTTGCGAACCCTTGGCGGTGGCCTATCGCGGAGATTAAAGCAACCTTCTGTGCTCAGAAACCTTTCCACAAACGCCGCTCGTGATAGTGT
CTTTGATGGTGATAAGGGAAAACCTGATTCATTTGAGTCTGCTGATGACTTCGAACGTCGGATATTTGGGGGTGTTTCTTTGGGCGGTTCCGGAAATGATGCTTTCTTTG
AGAAGCTTGATAGACTTGGCAAACCTCGTGAAAGAATAGGCTCGAGACTGAGTGGAGGAAACAATTTTCATACGTTGGATGGTCTTCAAGATAATATTAACACGCTGTCA
GATGGGATGGATGGCAAGTTGAAGAAAGCTTCCACTTATTTTGAGTTTGATCCCGAGGAAATAGAAAAACCTGATTATGCTTTCAGAGCAGATATGTCTTTTAAGCCTAG
ATCAACATACGAAATCAAGGCATGTAGCTGA
Protein sequenceShow/hide protein sequence
MRTVQVALRTLGGGLSRRLKQPSVLRNLSTNAARDSVFDGDKGKPDSFESADDFERRIFGGVSLGGSGNDAFFEKLDRLGKPRERIGSRLSGGNNFHTLDGLQDNINTLS
DGMDGKLKKASTYFEFDPEEIEKPDYAFRADMSFKPRSTYEIKACS