; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10001569 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10001569
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Descriptionpentatricopeptide repeat-containing protein At3g18110, chloroplastic
Genome locationChr09:18240740..18241294
RNA-Seq ExpressionHG10001569
SyntenyHG10001569
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7035564.1 Pentatricopeptide repeat-containing protein, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma]3.0e-8592.7Show/hide
Query:  LQDASLQGFPESPKSVVLITGTAEYNMVSLNSTLKVCLWEMGSPFLPCRTRSGLLIAKAHSLRMWLKDSSFCLDLELKDAPALPEFNSMKLIDGCFIRRG
        +QDASLQG PESPKSVVLITG+AEYNMVSLNSTLKVCLWEMGSPFLPCRTRSGLLIAKAHSLRMWLKDSSFC DLELKDAPALPE NSMKLIDGCFIRRG
Subjt:  LQDASLQGFPESPKSVVLITGTAEYNMVSLNSTLKVCLWEMGSPFLPCRTRSGLLIAKAHSLRMWLKDSSFCLDLELKDAPALPEFNSMKLIDGCFIRRG

Query:  LVPAFKDITERLGFVRPKKFSRLALLPDEKRDKVIKADLEGRKEKLEKVKQIIKSGKVRRITKIKKRAFYRRLDAVKK
        LVPAFKDITERLGFVRPKKFSRLALLPDEKRDKVIKADLEGRKEKLEKVK++IKSGKVRRIT+IKKR ++R L+AVKK
Subjt:  LVPAFKDITERLGFVRPKKFSRLALLPDEKRDKVIKADLEGRKEKLEKVKQIIKSGKVRRITKIKKRAFYRRLDAVKK

TYK07589.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]3.2e-8793.3Show/hide
Query:  LQDASLQGFPESPKSVVLITGTAEYNMVSLNSTLKVCLWEMGSPFLPCRTRSGLLIAKAHSLRMWLKDSSFCLDLELKDAPALPEFNSMKLIDGCFIRRG
        L DASLQGFPESPKSVVLITGTAEYNM+SLNSTLKVCLWEMGSPFLPCRTRSGLLIAKAHSLRMWLKDSSFCLDLELKDAPALPEFNSMK+I+GCFIRRG
Subjt:  LQDASLQGFPESPKSVVLITGTAEYNMVSLNSTLKVCLWEMGSPFLPCRTRSGLLIAKAHSLRMWLKDSSFCLDLELKDAPALPEFNSMKLIDGCFIRRG

Query:  LVPAFKDITERLGFVRPKKFSRLALLPDEKRDKVIKADLEGRKEKLEKVKQIIKSGKVRRITKIKKRAFYRRLDAVKKK
        LVPAFKDIT RLGFVRPKKFSRLALLPDEKRDKVI+ADLEGRKEKLEKVKQ+I+SGK +RITKIKKRA+YRRLDA+KKK
Subjt:  LVPAFKDITERLGFVRPKKFSRLALLPDEKRDKVIKADLEGRKEKLEKVKQIIKSGKVRRITKIKKRAFYRRLDAVKKK

XP_008463825.1 PREDICTED: pentatricopeptide repeat-containing protein At3g18110, chloroplastic [Cucumis melo]1.1e-8793.3Show/hide
Query:  LQDASLQGFPESPKSVVLITGTAEYNMVSLNSTLKVCLWEMGSPFLPCRTRSGLLIAKAHSLRMWLKDSSFCLDLELKDAPALPEFNSMKLIDGCFIRRG
        +QDASLQGFPESPKSVVLITGTAEYNM+SLNSTLKVCLWEMGSPFLPCRTRSGLLIAKAHSLRMWLKDSSFCLDLELKDAPALPEFNSMK+I+GCFIRRG
Subjt:  LQDASLQGFPESPKSVVLITGTAEYNMVSLNSTLKVCLWEMGSPFLPCRTRSGLLIAKAHSLRMWLKDSSFCLDLELKDAPALPEFNSMKLIDGCFIRRG

Query:  LVPAFKDITERLGFVRPKKFSRLALLPDEKRDKVIKADLEGRKEKLEKVKQIIKSGKVRRITKIKKRAFYRRLDAVKKK
        LVPAFKDIT RLGFVRPKKFSRLALLPDEKRDKVI+ADLEGRKEKLEKVKQ+I+SGK +RITKIKKRA+YRRLDA+KKK
Subjt:  LVPAFKDITERLGFVRPKKFSRLALLPDEKRDKVIKADLEGRKEKLEKVKQIIKSGKVRRITKIKKRAFYRRLDAVKKK

XP_011657187.1 pentatricopeptide repeat-containing protein At3g18110, chloroplastic isoform X1 [Cucumis sativus]1.3e-8894.41Show/hide
Query:  LQDASLQGFPESPKSVVLITGTAEYNMVSLNSTLKVCLWEMGSPFLPCRTRSGLLIAKAHSLRMWLKDSSFCLDLELKDAPALPEFNSMKLIDGCFIRRG
        +QDASLQGFPESPKSVVLITGTAEYNM+SLNSTLKVCLWEMGSPFLPCRTR GLLIAKAHSLRMWLKDSSFCLDLELKDAPALPEFNSMK+IDGCFIRRG
Subjt:  LQDASLQGFPESPKSVVLITGTAEYNMVSLNSTLKVCLWEMGSPFLPCRTRSGLLIAKAHSLRMWLKDSSFCLDLELKDAPALPEFNSMKLIDGCFIRRG

Query:  LVPAFKDITERLGFVRPKKFSRLALLPDEKRDKVIKADLEGRKEKLEKVKQIIKSGKVRRITKIKKRAFYRRLDAVKKK
        LVPAFKDITERLGFVRPKKFSRLALLPDEKRDKVIKADLEGRKEKLEKV Q+IKSGKV+RI KIKKRA+YRRLDA+KKK
Subjt:  LVPAFKDITERLGFVRPKKFSRLALLPDEKRDKVIKADLEGRKEKLEKVKQIIKSGKVRRITKIKKRAFYRRLDAVKKK

XP_038901451.1 pentatricopeptide repeat-containing protein At3g18110, chloroplastic isoform X1 [Benincasa hispida]1.8e-9097.77Show/hide
Query:  LQDASLQGFPESPKSVVLITGTAEYNMVSLNSTLKVCLWEMGSPFLPCRTRSGLLIAKAHSLRMWLKDSSFCLDLELKDAPALPEFNSMKLIDGCFIRRG
        +QDASLQGFPESPKSVVLITGTAEYNMVSLNSTLKVCLWEMGSPFLPCRTRSGLLIAKAHSLRMWLKDSSFCLDLELKDAPALPE NSMKLIDGCFIRRG
Subjt:  LQDASLQGFPESPKSVVLITGTAEYNMVSLNSTLKVCLWEMGSPFLPCRTRSGLLIAKAHSLRMWLKDSSFCLDLELKDAPALPEFNSMKLIDGCFIRRG

Query:  LVPAFKDITERLGFVRPKKFSRLALLPDEKRDKVIKADLEGRKEKLEKVKQIIKSGKVRRITKIKKRAFYRRLDAVKKK
        LVPAFKDITERLGFVRPKKFSRLALLPDEKRDKVIKADLEGRKEKLEKVKQIIKSGKVRRI KIKKRA+YRRLDAVKKK
Subjt:  LVPAFKDITERLGFVRPKKFSRLALLPDEKRDKVIKADLEGRKEKLEKVKQIIKSGKVRRITKIKKRAFYRRLDAVKKK

TrEMBL top hitse value%identityAlignment
A0A0A0KHH7 Uncharacterized protein3.0e-9194.57Show/hide
Query:  MSTMLLQDASLQGFPESPKSVVLITGTAEYNMVSLNSTLKVCLWEMGSPFLPCRTRSGLLIAKAHSLRMWLKDSSFCLDLELKDAPALPEFNSMKLIDGC
        MSTML QDASLQGFPESPKSVVLITGTAEYNM+SLNSTLKVCLWEMGSPFLPCRTR GLLIAKAHSLRMWLKDSSFCLDLELKDAPALPEFNSMK+IDGC
Subjt:  MSTMLLQDASLQGFPESPKSVVLITGTAEYNMVSLNSTLKVCLWEMGSPFLPCRTRSGLLIAKAHSLRMWLKDSSFCLDLELKDAPALPEFNSMKLIDGC

Query:  FIRRGLVPAFKDITERLGFVRPKKFSRLALLPDEKRDKVIKADLEGRKEKLEKVKQIIKSGKVRRITKIKKRAFYRRLDAVKKK
        FIRRGLVPAFKDITERLGFVRPKKFSRLALLPDEKRDKVIKADLEGRKEKLEKV Q+IKSGKV+RI KIKKRA+YRRLDA+KKK
Subjt:  FIRRGLVPAFKDITERLGFVRPKKFSRLALLPDEKRDKVIKADLEGRKEKLEKVKQIIKSGKVRRITKIKKRAFYRRLDAVKKK

A0A1S3CKK9 pentatricopeptide repeat-containing protein At3g18110, chloroplastic5.3e-8893.3Show/hide
Query:  LQDASLQGFPESPKSVVLITGTAEYNMVSLNSTLKVCLWEMGSPFLPCRTRSGLLIAKAHSLRMWLKDSSFCLDLELKDAPALPEFNSMKLIDGCFIRRG
        +QDASLQGFPESPKSVVLITGTAEYNM+SLNSTLKVCLWEMGSPFLPCRTRSGLLIAKAHSLRMWLKDSSFCLDLELKDAPALPEFNSMK+I+GCFIRRG
Subjt:  LQDASLQGFPESPKSVVLITGTAEYNMVSLNSTLKVCLWEMGSPFLPCRTRSGLLIAKAHSLRMWLKDSSFCLDLELKDAPALPEFNSMKLIDGCFIRRG

Query:  LVPAFKDITERLGFVRPKKFSRLALLPDEKRDKVIKADLEGRKEKLEKVKQIIKSGKVRRITKIKKRAFYRRLDAVKKK
        LVPAFKDIT RLGFVRPKKFSRLALLPDEKRDKVI+ADLEGRKEKLEKVKQ+I+SGK +RITKIKKRA+YRRLDA+KKK
Subjt:  LVPAFKDITERLGFVRPKKFSRLALLPDEKRDKVIKADLEGRKEKLEKVKQIIKSGKVRRITKIKKRAFYRRLDAVKKK

A0A5A7UY21 Pentatricopeptide repeat-containing protein5.3e-8893.3Show/hide
Query:  LQDASLQGFPESPKSVVLITGTAEYNMVSLNSTLKVCLWEMGSPFLPCRTRSGLLIAKAHSLRMWLKDSSFCLDLELKDAPALPEFNSMKLIDGCFIRRG
        +QDASLQGFPESPKSVVLITGTAEYNM+SLNSTLKVCLWEMGSPFLPCRTRSGLLIAKAHSLRMWLKDSSFCLDLELKDAPALPEFNSMK+I+GCFIRRG
Subjt:  LQDASLQGFPESPKSVVLITGTAEYNMVSLNSTLKVCLWEMGSPFLPCRTRSGLLIAKAHSLRMWLKDSSFCLDLELKDAPALPEFNSMKLIDGCFIRRG

Query:  LVPAFKDITERLGFVRPKKFSRLALLPDEKRDKVIKADLEGRKEKLEKVKQIIKSGKVRRITKIKKRAFYRRLDAVKKK
        LVPAFKDIT RLGFVRPKKFSRLALLPDEKRDKVI+ADLEGRKEKLEKVKQ+I+SGK +RITKIKKRA+YRRLDA+KKK
Subjt:  LVPAFKDITERLGFVRPKKFSRLALLPDEKRDKVIKADLEGRKEKLEKVKQIIKSGKVRRITKIKKRAFYRRLDAVKKK

A0A5D3CB97 Pentatricopeptide repeat-containing protein1.6e-8793.3Show/hide
Query:  LQDASLQGFPESPKSVVLITGTAEYNMVSLNSTLKVCLWEMGSPFLPCRTRSGLLIAKAHSLRMWLKDSSFCLDLELKDAPALPEFNSMKLIDGCFIRRG
        L DASLQGFPESPKSVVLITGTAEYNM+SLNSTLKVCLWEMGSPFLPCRTRSGLLIAKAHSLRMWLKDSSFCLDLELKDAPALPEFNSMK+I+GCFIRRG
Subjt:  LQDASLQGFPESPKSVVLITGTAEYNMVSLNSTLKVCLWEMGSPFLPCRTRSGLLIAKAHSLRMWLKDSSFCLDLELKDAPALPEFNSMKLIDGCFIRRG

Query:  LVPAFKDITERLGFVRPKKFSRLALLPDEKRDKVIKADLEGRKEKLEKVKQIIKSGKVRRITKIKKRAFYRRLDAVKKK
        LVPAFKDIT RLGFVRPKKFSRLALLPDEKRDKVI+ADLEGRKEKLEKVKQ+I+SGK +RITKIKKRA+YRRLDA+KKK
Subjt:  LVPAFKDITERLGFVRPKKFSRLALLPDEKRDKVIKADLEGRKEKLEKVKQIIKSGKVRRITKIKKRAFYRRLDAVKKK

A0A6J1H2M4 pentatricopeptide repeat-containing protein At3g18110, chloroplastic1.5e-8592.7Show/hide
Query:  LQDASLQGFPESPKSVVLITGTAEYNMVSLNSTLKVCLWEMGSPFLPCRTRSGLLIAKAHSLRMWLKDSSFCLDLELKDAPALPEFNSMKLIDGCFIRRG
        +QDASLQG PESPKSVVLITG+AEYNMVSLNSTLKVCLWEMGSPFLPCRTRSGLLIAKAHSLRMWLKDSSFC DLELKDAPALPE NSMKLIDGCFIRRG
Subjt:  LQDASLQGFPESPKSVVLITGTAEYNMVSLNSTLKVCLWEMGSPFLPCRTRSGLLIAKAHSLRMWLKDSSFCLDLELKDAPALPEFNSMKLIDGCFIRRG

Query:  LVPAFKDITERLGFVRPKKFSRLALLPDEKRDKVIKADLEGRKEKLEKVKQIIKSGKVRRITKIKKRAFYRRLDAVKK
        LVPAFKDITERLGFVRPKKFSRLALLPDEKRDKVIKADLEGRKEKLEKVK++IKSGKVRRIT+IKKR ++R L+AVKK
Subjt:  LVPAFKDITERLGFVRPKKFSRLALLPDEKRDKVIKADLEGRKEKLEKVKQIIKSGKVRRITKIKKRAFYRRLDAVKK

SwissProt top hitse value%identityAlignment
Q5G1S8 Pentatricopeptide repeat-containing protein At3g18110, chloroplastic5.2e-6478.29Show/hide
Query:  LQDASLQGFPESPKSVVLITGTAEYNMVSLNSTLKVCLWEMGSPFLPCRTRSGLLIAKAHSLRMWLKDSSFCLDLELKDAPALPEFNSMKLIDGCFIRRG
        +QDASL+G+PESPKSVVLITGTAEYN +SL+ TLK CLWEMGSPFLPC+TR+GLL+AKAHSLRMWLKDS FC DLELKD+ +LPE NSM LIDGCFIRRG
Subjt:  LQDASLQGFPESPKSVVLITGTAEYNMVSLNSTLKVCLWEMGSPFLPCRTRSGLLIAKAHSLRMWLKDSSFCLDLELKDAPALPEFNSMKLIDGCFIRRG

Query:  LVPAFKDITERL-GFVRPKKFSRLALLPDEKRDKVIKADLEGRKEKLEKVKQ
        LVPAF  I ERL GFV PKKFSRLALLPDE R++VIK D+EG ++KLEK+K+
Subjt:  LVPAFKDITERL-GFVRPKKFSRLALLPDEKRDKVIKADLEGRKEKLEKVKQ

Arabidopsis top hitse value%identityAlignment
AT3G18110.1 Pentatricopeptide repeat (PPR) superfamily protein3.7e-6578.29Show/hide
Query:  LQDASLQGFPESPKSVVLITGTAEYNMVSLNSTLKVCLWEMGSPFLPCRTRSGLLIAKAHSLRMWLKDSSFCLDLELKDAPALPEFNSMKLIDGCFIRRG
        +QDASL+G+PESPKSVVLITGTAEYN +SL+ TLK CLWEMGSPFLPC+TR+GLL+AKAHSLRMWLKDS FC DLELKD+ +LPE NSM LIDGCFIRRG
Subjt:  LQDASLQGFPESPKSVVLITGTAEYNMVSLNSTLKVCLWEMGSPFLPCRTRSGLLIAKAHSLRMWLKDSSFCLDLELKDAPALPEFNSMKLIDGCFIRRG

Query:  LVPAFKDITERL-GFVRPKKFSRLALLPDEKRDKVIKADLEGRKEKLEKVKQ
        LVPAF  I ERL GFV PKKFSRLALLPDE R++VIK D+EG ++KLEK+K+
Subjt:  LVPAFKDITERL-GFVRPKKFSRLALLPDEKRDKVIKADLEGRKEKLEKVKQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTACTATGTTATTGCAGGATGCATCATTGCAAGGTTTTCCAGAATCTCCAAAATCAGTTGTTCTGATCACTGGAACAGCAGAATATAACATGGTTTCTCTCAATAG
CACACTAAAAGTATGCCTTTGGGAGATGGGTTCTCCTTTTCTACCTTGTAGAACGCGCAGTGGTCTTCTTATAGCAAAAGCTCACTCTCTCAGGATGTGGCTAAAAGACT
CCTCTTTTTGTTTGGACCTTGAATTGAAAGATGCCCCAGCTCTCCCCGAATTTAATTCGATGAAGCTAATCGATGGATGCTTTATAAGACGAGGCCTTGTTCCTGCATTC
AAGGACATAACTGAAAGATTGGGATTTGTGAGGCCCAAGAAATTCTCTAGGTTGGCTTTACTTCCTGATGAAAAGAGGGACAAGGTCATTAAAGCTGATTTAGAAGGTAG
GAAAGAGAAGCTTGAAAAAGTAAAACAAATTATCAAGTCAGGGAAGGTGAGGAGGATAACGAAGATTAAAAAGAGGGCATTCTATCGTAGACTTGATGCTGTAAAGAAAA
AATAG
mRNA sequenceShow/hide mRNA sequence
ATGTCTACTATGTTATTGCAGGATGCATCATTGCAAGGTTTTCCAGAATCTCCAAAATCAGTTGTTCTGATCACTGGAACAGCAGAATATAACATGGTTTCTCTCAATAG
CACACTAAAAGTATGCCTTTGGGAGATGGGTTCTCCTTTTCTACCTTGTAGAACGCGCAGTGGTCTTCTTATAGCAAAAGCTCACTCTCTCAGGATGTGGCTAAAAGACT
CCTCTTTTTGTTTGGACCTTGAATTGAAAGATGCCCCAGCTCTCCCCGAATTTAATTCGATGAAGCTAATCGATGGATGCTTTATAAGACGAGGCCTTGTTCCTGCATTC
AAGGACATAACTGAAAGATTGGGATTTGTGAGGCCCAAGAAATTCTCTAGGTTGGCTTTACTTCCTGATGAAAAGAGGGACAAGGTCATTAAAGCTGATTTAGAAGGTAG
GAAAGAGAAGCTTGAAAAAGTAAAACAAATTATCAAGTCAGGGAAGGTGAGGAGGATAACGAAGATTAAAAAGAGGGCATTCTATCGTAGACTTGATGCTGTAAAGAAAA
AATAG
Protein sequenceShow/hide protein sequence
MSTMLLQDASLQGFPESPKSVVLITGTAEYNMVSLNSTLKVCLWEMGSPFLPCRTRSGLLIAKAHSLRMWLKDSSFCLDLELKDAPALPEFNSMKLIDGCFIRRGLVPAF
KDITERLGFVRPKKFSRLALLPDEKRDKVIKADLEGRKEKLEKVKQIIKSGKVRRITKIKKRAFYRRLDAVKKK