; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10001615 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10001615
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionPHD-type domain-containing protein
Genome locationChr09:18685370..18687170
RNA-Seq ExpressionHG10001615
SyntenyHG10001615
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0048583 - regulation of response to stimulus (biological process)
GO:0005634 - nucleus (cellular component)
GO:0031490 - chromatin DNA binding (molecular function)
GO:0042393 - histone binding (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR026741 - Protein strawberry notch


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0054722.1 protein strawberry notch [Cucumis melo var. makuwa]1.2e-6596.95Show/hide
Query:  MYKIIRPAVGESLREMSLSELRNKYRKTSSLEKARNGWEDEYDISSKQCMHGPKCKLGNFCTVGRRIQEVNVLGGLILPVWGTIENALSKQARQSHQRLR
        MYKI+RPA+GESLREMSLSELRNKYRKTSSLEKARNGWEDEYDISSKQCMHGPKCKLGNFCTVGRRIQEVNVLGGLILPVWGTIENALSKQARQSHQRLR
Subjt:  MYKIIRPAVGESLREMSLSELRNKYRKTSSLEKARNGWEDEYDISSKQCMHGPKCKLGNFCTVGRRIQEVNVLGGLILPVWGTIENALSKQARQSHQRLR

Query:  VVRIETTTDKQRIVGLFVPNAAVESVLRGLS
        VVRIETTTDKQRIVGLFVPNAAVESVL+GL+
Subjt:  VVRIETTTDKQRIVGLFVPNAAVESVLRGLS

XP_004139916.1 protein FORGETTER 1 isoform X1 [Cucumis sativus]4.0e-6697.71Show/hide
Query:  MYKIIRPAVGESLREMSLSELRNKYRKTSSLEKARNGWEDEYDISSKQCMHGPKCKLGNFCTVGRRIQEVNVLGGLILPVWGTIENALSKQARQSHQRLR
        MYKI+RPA+GESLREMSLSELRNKYRKTSSLEKARNGWEDEYDISSKQCMHGPKCKLGNFCTVGRRIQEVNVLGGLILPVWGTIENALSKQARQSHQRLR
Subjt:  MYKIIRPAVGESLREMSLSELRNKYRKTSSLEKARNGWEDEYDISSKQCMHGPKCKLGNFCTVGRRIQEVNVLGGLILPVWGTIENALSKQARQSHQRLR

Query:  VVRIETTTDKQRIVGLFVPNAAVESVLRGLS
        VVRIETTTDKQRIVGLFVPNAAVESVLRGL+
Subjt:  VVRIETTTDKQRIVGLFVPNAAVESVLRGLS

XP_008456277.2 PREDICTED: protein strawberry notch [Cucumis melo]1.2e-6596.95Show/hide
Query:  MYKIIRPAVGESLREMSLSELRNKYRKTSSLEKARNGWEDEYDISSKQCMHGPKCKLGNFCTVGRRIQEVNVLGGLILPVWGTIENALSKQARQSHQRLR
        MYKI+RPA+GESLREMSLSELRNKYRKTSSLEKARNGWEDEYDISSKQCMHGPKCKLGNFCTVGRRIQEVNVLGGLILPVWGTIENALSKQARQSHQRLR
Subjt:  MYKIIRPAVGESLREMSLSELRNKYRKTSSLEKARNGWEDEYDISSKQCMHGPKCKLGNFCTVGRRIQEVNVLGGLILPVWGTIENALSKQARQSHQRLR

Query:  VVRIETTTDKQRIVGLFVPNAAVESVLRGLS
        VVRIETTTDKQRIVGLFVPNAAVESVL+GL+
Subjt:  VVRIETTTDKQRIVGLFVPNAAVESVLRGLS

XP_031742749.1 protein FORGETTER 1 isoform X2 [Cucumis sativus]4.0e-6697.71Show/hide
Query:  MYKIIRPAVGESLREMSLSELRNKYRKTSSLEKARNGWEDEYDISSKQCMHGPKCKLGNFCTVGRRIQEVNVLGGLILPVWGTIENALSKQARQSHQRLR
        MYKI+RPA+GESLREMSLSELRNKYRKTSSLEKARNGWEDEYDISSKQCMHGPKCKLGNFCTVGRRIQEVNVLGGLILPVWGTIENALSKQARQSHQRLR
Subjt:  MYKIIRPAVGESLREMSLSELRNKYRKTSSLEKARNGWEDEYDISSKQCMHGPKCKLGNFCTVGRRIQEVNVLGGLILPVWGTIENALSKQARQSHQRLR

Query:  VVRIETTTDKQRIVGLFVPNAAVESVLRGLS
        VVRIETTTDKQRIVGLFVPNAAVESVLRGL+
Subjt:  VVRIETTTDKQRIVGLFVPNAAVESVLRGLS

XP_031742751.1 protein FORGETTER 1 isoform X4 [Cucumis sativus]4.0e-6697.71Show/hide
Query:  MYKIIRPAVGESLREMSLSELRNKYRKTSSLEKARNGWEDEYDISSKQCMHGPKCKLGNFCTVGRRIQEVNVLGGLILPVWGTIENALSKQARQSHQRLR
        MYKI+RPA+GESLREMSLSELRNKYRKTSSLEKARNGWEDEYDISSKQCMHGPKCKLGNFCTVGRRIQEVNVLGGLILPVWGTIENALSKQARQSHQRLR
Subjt:  MYKIIRPAVGESLREMSLSELRNKYRKTSSLEKARNGWEDEYDISSKQCMHGPKCKLGNFCTVGRRIQEVNVLGGLILPVWGTIENALSKQARQSHQRLR

Query:  VVRIETTTDKQRIVGLFVPNAAVESVLRGLS
        VVRIETTTDKQRIVGLFVPNAAVESVLRGL+
Subjt:  VVRIETTTDKQRIVGLFVPNAAVESVLRGLS

TrEMBL top hitse value%identityAlignment
A0A0A0KD57 PHD-type domain-containing protein1.9e-6697.71Show/hide
Query:  MYKIIRPAVGESLREMSLSELRNKYRKTSSLEKARNGWEDEYDISSKQCMHGPKCKLGNFCTVGRRIQEVNVLGGLILPVWGTIENALSKQARQSHQRLR
        MYKI+RPA+GESLREMSLSELRNKYRKTSSLEKARNGWEDEYDISSKQCMHGPKCKLGNFCTVGRRIQEVNVLGGLILPVWGTIENALSKQARQSHQRLR
Subjt:  MYKIIRPAVGESLREMSLSELRNKYRKTSSLEKARNGWEDEYDISSKQCMHGPKCKLGNFCTVGRRIQEVNVLGGLILPVWGTIENALSKQARQSHQRLR

Query:  VVRIETTTDKQRIVGLFVPNAAVESVLRGLS
        VVRIETTTDKQRIVGLFVPNAAVESVLRGL+
Subjt:  VVRIETTTDKQRIVGLFVPNAAVESVLRGLS

A0A1S3C445 protein strawberry notch5.7e-6696.95Show/hide
Query:  MYKIIRPAVGESLREMSLSELRNKYRKTSSLEKARNGWEDEYDISSKQCMHGPKCKLGNFCTVGRRIQEVNVLGGLILPVWGTIENALSKQARQSHQRLR
        MYKI+RPA+GESLREMSLSELRNKYRKTSSLEKARNGWEDEYDISSKQCMHGPKCKLGNFCTVGRRIQEVNVLGGLILPVWGTIENALSKQARQSHQRLR
Subjt:  MYKIIRPAVGESLREMSLSELRNKYRKTSSLEKARNGWEDEYDISSKQCMHGPKCKLGNFCTVGRRIQEVNVLGGLILPVWGTIENALSKQARQSHQRLR

Query:  VVRIETTTDKQRIVGLFVPNAAVESVLRGLS
        VVRIETTTDKQRIVGLFVPNAAVESVL+GL+
Subjt:  VVRIETTTDKQRIVGLFVPNAAVESVLRGLS

A0A5A7UG06 Protein strawberry notch5.7e-6696.95Show/hide
Query:  MYKIIRPAVGESLREMSLSELRNKYRKTSSLEKARNGWEDEYDISSKQCMHGPKCKLGNFCTVGRRIQEVNVLGGLILPVWGTIENALSKQARQSHQRLR
        MYKI+RPA+GESLREMSLSELRNKYRKTSSLEKARNGWEDEYDISSKQCMHGPKCKLGNFCTVGRRIQEVNVLGGLILPVWGTIENALSKQARQSHQRLR
Subjt:  MYKIIRPAVGESLREMSLSELRNKYRKTSSLEKARNGWEDEYDISSKQCMHGPKCKLGNFCTVGRRIQEVNVLGGLILPVWGTIENALSKQARQSHQRLR

Query:  VVRIETTTDKQRIVGLFVPNAAVESVLRGLS
        VVRIETTTDKQRIVGLFVPNAAVESVL+GL+
Subjt:  VVRIETTTDKQRIVGLFVPNAAVESVLRGLS

A0A5D3B6Z1 Protein strawberry notch5.7e-6696.95Show/hide
Query:  MYKIIRPAVGESLREMSLSELRNKYRKTSSLEKARNGWEDEYDISSKQCMHGPKCKLGNFCTVGRRIQEVNVLGGLILPVWGTIENALSKQARQSHQRLR
        MYKI+RPA+GESLREMSLSELRNKYRKTSSLEKARNGWEDEYDISSKQCMHGPKCKLGNFCTVGRRIQEVNVLGGLILPVWGTIENALSKQARQSHQRLR
Subjt:  MYKIIRPAVGESLREMSLSELRNKYRKTSSLEKARNGWEDEYDISSKQCMHGPKCKLGNFCTVGRRIQEVNVLGGLILPVWGTIENALSKQARQSHQRLR

Query:  VVRIETTTDKQRIVGLFVPNAAVESVLRGLS
        VVRIETTTDKQRIVGLFVPNAAVESVL+GL+
Subjt:  VVRIETTTDKQRIVGLFVPNAAVESVLRGLS

A0A6J1D689 protein FORGETTER 17.7e-6393.13Show/hide
Query:  MYKIIRPAVGESLREMSLSELRNKYRKTSSLEKARNGWEDEYDISSKQCMHGPKCKLGNFCTVGRRIQEVNVLGGLILPVWGTIENALSKQARQSHQRLR
        MYKI+RPAVGESLREMSL+ELRNKYRKTSSLEKAR+GWEDEY+ISSKQCMHGP CKLGNFCTVGRRIQEVNVLGGLILPVWGTIE ALSKQARQSH+RLR
Subjt:  MYKIIRPAVGESLREMSLSELRNKYRKTSSLEKARNGWEDEYDISSKQCMHGPKCKLGNFCTVGRRIQEVNVLGGLILPVWGTIENALSKQARQSHQRLR

Query:  VVRIETTTDKQRIVGLFVPNAAVESVLRGLS
        VVRIETTTDKQRIVGLFVPN AVESVLRGL+
Subjt:  VVRIETTTDKQRIVGLFVPNAAVESVLRGLS

SwissProt top hitse value%identityAlignment
A3KN83 Protein strawberry notch homolog 17.7e-1232.37Show/hide
Query:  MYKIIRPAVGESLREMSLSELRNKYRKTSSLEKARNGWEDEYDISSKQCMHG------PKCKLGNFCTVGRRIQEVNVLGGLILPVWGTIENALSKQARQ
        ++ + RP  G+ L+    ++L+ KY+K  S + A   W D+Y+ S+  C H        K  LG  C +G R +   VL G +L VW  +E  L+     
Subjt:  MYKIIRPAVGESLREMSLSELRNKYRKTSSLEKARNGWEDEYDISSKQCMHG------PKCKLGNFCTVGRRIQEVNVLGGLILPVWGTIENALSKQARQ

Query:  SHQRLRVVRIETTTDKQRIVGLFVPNAAVESVLRGLSCS
        ++ ++++VR+  T D QRIVGL +P   V  ++  LS S
Subjt:  SHQRLRVVRIETTTDKQRIVGLFVPNAAVESVLRGLSCS

F4IF36 Protein FORGETTER 13.2e-5880.15Show/hide
Query:  MYKIIRPAVGESLREMSLSELRNKYRKTSSLEKARNGWEDEYDISSKQCMHGPKCKLGNFCTVGRRIQEVNVLGGLILPVWGTIENALSKQARQSHQRLR
        ++KI+RPAVGES+REMSLSEL+ KYRK SSLEKAR GWEDEY++SSKQCMHGPKCKLG +CTVGRRIQEVNV+GGLILP+WGTIE ALSKQAR SH+R+R
Subjt:  MYKIIRPAVGESLREMSLSELRNKYRKTSSLEKARNGWEDEYDISSKQCMHGPKCKLGNFCTVGRRIQEVNVLGGLILPVWGTIENALSKQARQSHQRLR

Query:  VVRIETTTDKQRIVGLFVPNAAVESVLRGLS
        V+RIETTTD QRIVGL +PNAAVE+VL+ L+
Subjt:  VVRIETTTDKQRIVGLFVPNAAVESVLRGLS

Q5BJL5 Protein strawberry notch homolog 17.7e-1233.09Show/hide
Query:  MYKIIRPAVGESLREMSLSELRNKYRKTSSLEKARNGWEDEYDISSKQCMHG------PKCKLGNFCTVGRRIQEVNVLGGLILPVWGTIENALSKQARQ
        ++ I RP  G+ L+    ++L+ KY+K  S + A   W D+Y+ S+  C H        K  LG  C +G R +   VL G +L VW  +E  L+     
Subjt:  MYKIIRPAVGESLREMSLSELRNKYRKTSSLEKARNGWEDEYDISSKQCMHG------PKCKLGNFCTVGRRIQEVNVLGGLILPVWGTIENALSKQARQ

Query:  SHQRLRVVRIETTTDKQRIVGLFVPNAAVESVLRGLSCS
        ++ ++++VR+  T D QRIVGL +P   V  ++  LS S
Subjt:  SHQRLRVVRIETTTDKQRIVGLFVPNAAVESVLRGLSCS

Q689Z5 Protein strawberry notch homolog 17.7e-1233.09Show/hide
Query:  MYKIIRPAVGESLREMSLSELRNKYRKTSSLEKARNGWEDEYDISSKQCMHG------PKCKLGNFCTVGRRIQEVNVLGGLILPVWGTIENALSKQARQ
        ++ I RP  G+ L+    ++L+ KY+K  S + A   W D+Y+ S+  C H        K  LG  C +G R +   VL G +L VW  +E  L+     
Subjt:  MYKIIRPAVGESLREMSLSELRNKYRKTSSLEKARNGWEDEYDISSKQCMHG------PKCKLGNFCTVGRRIQEVNVLGGLILPVWGTIENALSKQARQ

Query:  SHQRLRVVRIETTTDKQRIVGLFVPNAAVESVLRGLSCS
        ++ ++++VR+  T D QRIVGL +P   V  ++  LS S
Subjt:  SHQRLRVVRIETTTDKQRIVGLFVPNAAVESVLRGLSCS

Arabidopsis top hitse value%identityAlignment
AT1G79350.1 RING/FYVE/PHD zinc finger superfamily protein2.3e-5980.15Show/hide
Query:  MYKIIRPAVGESLREMSLSELRNKYRKTSSLEKARNGWEDEYDISSKQCMHGPKCKLGNFCTVGRRIQEVNVLGGLILPVWGTIENALSKQARQSHQRLR
        ++KI+RPAVGES+REMSLSEL+ KYRK SSLEKAR GWEDEY++SSKQCMHGPKCKLG +CTVGRRIQEVNV+GGLILP+WGTIE ALSKQAR SH+R+R
Subjt:  MYKIIRPAVGESLREMSLSELRNKYRKTSSLEKARNGWEDEYDISSKQCMHGPKCKLGNFCTVGRRIQEVNVLGGLILPVWGTIENALSKQARQSHQRLR

Query:  VVRIETTTDKQRIVGLFVPNAAVESVLRGLS
        V+RIETTTD QRIVGL +PNAAVE+VL+ L+
Subjt:  VVRIETTTDKQRIVGLFVPNAAVESVLRGLS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTATAAAATTATCCGCCCAGCTGTTGGCGAGTCACTAAGGGAAATGTCTCTCTCGGAGTTACGAAACAAATATCGAAAAACGTCATCTTTAGAGAAGGCTCGTAATGG
GTGGGAAGATGAGTATGACATTTCCTCAAAACAGTGCATGCATGGACCGAAGTGTAAGCTTGGGAACTTTTGTACGGTTGGCAGGAGAATACAGGAAGTTAATGTTTTGG
GTGGCCTTATTCTTCCTGTTTGGGGGACTATTGAAAATGCCCTTTCTAAGCAGGCCCGCCAAAGTCACCAGCGGCTTCGTGTAGTACGTATAGAAACCACGACAGATAAA
CAGAGAATAGTTGGGCTGTTTGTTCCAAATGCAGCTGTTGAATCAGTGCTTCGAGGTCTCTCTTGCTCTCGCATTCAATTATTTCTGTAG
mRNA sequenceShow/hide mRNA sequence
ATGTATAAAATTATCCGCCCAGCTGTTGGCGAGTCACTAAGGGAAATGTCTCTCTCGGAGTTACGAAACAAATATCGAAAAACGTCATCTTTAGAGAAGGCTCGTAATGG
GTGGGAAGATGAGTATGACATTTCCTCAAAACAGTGCATGCATGGACCGAAGTGTAAGCTTGGGAACTTTTGTACGGTTGGCAGGAGAATACAGGAAGTTAATGTTTTGG
GTGGCCTTATTCTTCCTGTTTGGGGGACTATTGAAAATGCCCTTTCTAAGCAGGCCCGCCAAAGTCACCAGCGGCTTCGTGTAGTACGTATAGAAACCACGACAGATAAA
CAGAGAATAGTTGGGCTGTTTGTTCCAAATGCAGCTGTTGAATCAGTGCTTCGAGGTCTCTCTTGCTCTCGCATTCAATTATTTCTGTAG
Protein sequenceShow/hide protein sequence
MYKIIRPAVGESLREMSLSELRNKYRKTSSLEKARNGWEDEYDISSKQCMHGPKCKLGNFCTVGRRIQEVNVLGGLILPVWGTIENALSKQARQSHQRLRVVRIETTTDK
QRIVGLFVPNAAVESVLRGLSCSRIQLFL