CuGenDBv2

Gene ID	HG10001627
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	50S ribosomal protein L20
Genome location	Chr09:18830809..18833087
RNA-Seq Expression	HG10001627
Synteny	HG10001627
Gene Ontology terms	GO:0000027 - ribosomal large subunit assembly (biological process) GO:0006412 - translation (biological process) GO:0005737 - cytoplasm (cellular component) GO:0005840 - ribosome (cellular component) GO:0003735 - structural constituent of ribosome (molecular function) GO:0019843 - rRNA binding (molecular function)
InterPro domains	IPR005813 - Ribosomal protein L20 IPR035566 - Ribosomal protein L20, C-terminal

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004139908.1 uncharacterized protein LOC101216644 [Cucumis sativus]

1.9e-62

98.4

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Query:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRTKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVD
        MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRR KKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSE+SMHEPYSFKALVD
Subjt:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRTKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVD

Query:  ISRNAFPGNKNVVFPPKKDAASMIV
        ISRNAFPGNKNVVFPPKKDAASMIV
Subjt:  ISRNAFPGNKNVVFPPKKDAASMIV

XP_008456292.1 PREDICTED: 50S ribosomal protein L20 [Cucumis melo]

1.1e-62

99.2

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Query:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRTKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVD
        MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRR KKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVD
Subjt:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRTKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVD

Query:  ISRNAFPGNKNVVFPPKKDAASMIV
        ISRNAFPGNKNVVFPPKKDAASMIV
Subjt:  ISRNAFPGNKNVVFPPKKDAASMIV

XP_022943497.1 uncharacterized protein LOC111448251 [Cucurbita moschata]

3.2e-62

98.4

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Query:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRTKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVD
        MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRR KKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVD
Subjt:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRTKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVD

Query:  ISRNAFPGNKNVVFPPKKDAASMIV
        ISRNAFPGNKNVVFPPKKDA SMIV
Subjt:  ISRNAFPGNKNVVFPPKKDAASMIV

XP_022985864.1 uncharacterized protein LOC111483787 [Cucurbita maxima]

4.1e-62

97.6

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Query:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRTKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVD
        MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRR KKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVD
Subjt:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRTKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVD

Query:  ISRNAFPGNKNVVFPPKKDAASMIV
        ISRNAFPGNKNVVFPPKKDA SM+V
Subjt:  ISRNAFPGNKNVVFPPKKDAASMIV

XP_038901625.1 50S ribosomal protein L20 [Benincasa hispida]

7.1e-62

97.6

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Query:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRTKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVD
        MNKDKIFKLAKG+RGRAKNCIRIARERVEK LQYSYRDRR KKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVD
Subjt:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRTKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVD

Query:  ISRNAFPGNKNVVFPPKKDAASMIV
        ISRNAFPGNKNVVFPPKKDAASMIV
Subjt:  ISRNAFPGNKNVVFPPKKDAASMIV

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KD68 50S ribosomal protein L20

9.0e-63

98.4

Show/hide

Query:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRTKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVD
        MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRR KKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSE+SMHEPYSFKALVD
Subjt:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRTKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVD

Query:  ISRNAFPGNKNVVFPPKKDAASMIV
        ISRNAFPGNKNVVFPPKKDAASMIV
Subjt:  ISRNAFPGNKNVVFPPKKDAASMIV

A0A1S4E159 50S ribosomal protein L20

5.3e-63

99.2

Show/hide

Query:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRTKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVD
        MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRR KKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVD
Subjt:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRTKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVD

Query:  ISRNAFPGNKNVVFPPKKDAASMIV
        ISRNAFPGNKNVVFPPKKDAASMIV
Subjt:  ISRNAFPGNKNVVFPPKKDAASMIV

A0A6J1FUI3 50S ribosomal protein L20

1.5e-62

98.4

Show/hide

Query:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRTKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVD
        MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRR KKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVD
Subjt:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRTKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVD

Query:  ISRNAFPGNKNVVFPPKKDAASMIV
        ISRNAFPGNKNVVFPPKKDA SMIV
Subjt:  ISRNAFPGNKNVVFPPKKDAASMIV

A0A6J1JCG1 50S ribosomal protein L20

2.0e-62

97.6

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Query:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRTKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVD
        MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRR KKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVD
Subjt:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRTKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVD

Query:  ISRNAFPGNKNVVFPPKKDAASMIV
        ISRNAFPGNKNVVFPPKKDA SM+V
Subjt:  ISRNAFPGNKNVVFPPKKDAASMIV

A0A6J1KY75 50S ribosomal protein L20

1.4e-60

93.6

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Query:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRTKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVD
        MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRR KKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKEN+QLNRKVLSELSMHEPYSFK+LVD
Subjt:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRTKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVD

Query:  ISRNAFPGNKNVVFPPKKDAASMIV
        ISRNAFPGNKNVVFPPKKD  S+++
Subjt:  ISRNAFPGNKNVVFPPKKDAASMIV

SwissProt top hits

e value

%identity

Alignment

B6IPJ8 50S ribosomal protein L20

3.9e-31

62.38

Show/hide

Query:  KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRTKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVDISRN
        K+ KLAKG+RGR+  C RIA ERVEKAL+Y+YRDRR +KRD R LWIQRINAG RLHG+ Y  FMHGL +  ++++RKVLS+++  EP SFKALV+ ++ 
Subjt:  KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRTKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVDISRN

Query:  A
        A
Subjt:  A

C0R3S6 50S ribosomal protein L20

3.1e-28

63.54

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Query:  KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRTKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVD
        KI KLAKG+RGRAK+C RIA +RVEKALQY+YRDRRT+KRD RSLWI RINA  R HG+ YG FMHGL    + LNRK+L+E++++    F  LV+
Subjt:  KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRTKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVD

Q2GHR2 50S ribosomal protein L20

5.3e-28

59.41

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Query:  KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRTKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVDISRN
        K+ KLAKG+RGR+KNC RIA +RVEKALQY+YRDRR +KR  RSLWI RINA  R HG+ Y +F+HGL   NV LNRKVL++++++    FK +VD+ + 
Subjt:  KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRTKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVDISRN

Query:  A
        A
Subjt:  A

Q3YSX0 50S ribosomal protein L20

1.1e-28

59.41

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Query:  KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRTKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVDISRN
        K+ KLAKG+RGR+KNC RIA +RVEKALQY+YRDRR +KR  RSLWI RINA  R HG+ Y +F+HGL   N+ LNRKVL++++++   +FK +VDI++ 
Subjt:  KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRTKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVDISRN

Query:  A
        A
Subjt:  A

Q73GR7 50S ribosomal protein L20

3.1e-28

63.54

Show/hide

Query:  KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRTKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVD
        KI KLAKG+RGRAK+C RIA +RVEKALQY+YRDRRT+KRD RSLWI RINA  R HG+ YG FMHGL    + LNRK+L+E++++    F  LV+
Subjt:  KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRTKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVD

Arabidopsis top hits

e value

%identity

Alignment

AT1G16740.1 Ribosomal protein L20

1.5e-54

83.06

Show/hide

Query:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRTKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVD
        MNK +IFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRR KKR+MR LWI+RINAG+R HGVNYGNF+HGLMKEN+QLNRKVLSELSMHEPYSFKALVD
Subjt:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRTKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVD

Query:  ISRNAFPGNKNVVFPPKKDAASMI
        +SR +FPGNKNVV   +K   S I
Subjt:  ISRNAFPGNKNVVFPPKKDAASMI

ATCG00660.1 ribosomal protein L20

1.1e-09

38.2

Show/hide

Query:  KDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRTKKRDMRSLWIQRINAGTRLHGV--NYGNFMHGLMKENVQLNRKVLSELSM
        + K+   A  FRG      R   ++  +AL  ++RDR  +KRD R LWI RINA     GV  +Y  F+H L K+ + LNRK+L+++++
Subjt:  KDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRTKKRDMRSLWIQRINAGTRLHGV--NYGNFMHGLMKENVQLNRKVLSELSM

Sequences

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CDS sequence

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ATGAACAAGGACAAGATATTTAAGCTAGCCAAGGGTTTCAGAGGCAGGGCCAAGAATTGCATAAGGATTGCTAGAGAGCGGGTGGAGAAGGCTCTCCAGTATTCCTACAG
GGATCGCCGTACTAAGAAGCGAGACATGCGCTCCCTTTGGATACAACGTATCAATGCTGGCACGCGCCTTCATGGGGTAAACTACGGCAATTTTATGCATGGGCTGATGA
AGGAGAATGTCCAACTAAATAGAAAAGTATTATCAGAGCTCTCGATGCACGAGCCTTACAGTTTCAAGGCCCTGGTAGACATCTCTCGTAATGCATTTCCTGGAAACAAG
AATGTAGTGTTTCCCCCCAAGAAGGATGCTGCTTCCATGATTGTTTAA

mRNA sequence

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Protein sequence

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MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRTKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVDISRNAFPGNK
NVVFPPKKDAASMIV

HG10001627 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome