; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10001669 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10001669
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionDNA-directed RNA polymerase III subunit rpc6
Genome locationChr09:19326027..19326746
RNA-Seq ExpressionHG10001669
SyntenyHG10001669
Gene Ontology termsGO:0006383 - transcription by RNA polymerase III (biological process)
GO:0005666 - RNA polymerase III complex (cellular component)
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
GO:0008168 - methyltransferase activity (molecular function)
InterPro domainsIPR007832 - RNA polymerase Rpc34
IPR016049 - RNA polymerase Rpc34-like
IPR036388 - Winged helix-like DNA-binding domain superfamily
IPR036390 - Winged helix DNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6604735.1 DNA-directed RNA polymerase III subunit rpc6, partial [Cucurbita argyrosperma subsp. sororia]3.4e-12189.54Show/hide
Query:  MSKSQGPSSLKRKRPDSAHGSGGALIEHEKVLHDLICSKQSMGIWIGDIRRETKYADSVVTKSLKSLQARGLIKLVEHYQNKGKKFYLSKDFEPSKELTG
        MS+SQGPSSLKRKRP+ AHG GGALIEHEKVL+DLICSKQSMGIWIGD++RETKY D+VVTKSLK+LQ RGLIKLVEHYQNKGKKFYLSKDFEPSKELTG
Subjt:  MSKSQGPSSLKRKRPDSAHGSGGALIEHEKVLHDLICSKQSMGIWIGDIRRETKYADSVVTKSLKSLQARGLIKLVEHYQNKGKKFYLSKDFEPSKELTG

Query:  GNWYSDGKLDQEYINTLKGFCARMIQKLKLATIEGIVDSFKKSGASKVDLSKEQIEEIVNALVLDNEVMEVKSTGSGEFDFIPVGKICYKFAKGGVKGEP
        GNWYSDGKLD+EYI+TLKGFCARMIQK+K+ATIEGIVDSFKKSGASKVDLS+EQIEEIVNALVLDNEVMEVKSTG+GEFDFIPVGKICYK    GVKGEP
Subjt:  GNWYSDGKLDQEYINTLKGFCARMIQKLKLATIEGIVDSFKKSGASKVDLSKEQIEEIVNALVLDNEVMEVKSTGSGEFDFIPVGKICYKFAKGGVKGEP

Query:  KTGAMASIPCGVCPRISHCTPDGIISPRTCVYYTKWLDF
        KTGAMAS PCGVCPRI+HCTP+GIISPRTCVYYTKWL+F
Subjt:  KTGAMASIPCGVCPRISHCTPDGIISPRTCVYYTKWLDF

XP_022149571.1 DNA-directed RNA polymerase III subunit rpc6 isoform X1 [Momordica charantia]8.0e-12390.83Show/hide
Query:  MSKSQGPSSLKRKRPDSAHGSGGALIEHEKVLHDLICSKQSMGIWIGDIRRETKYADSVVTKSLKSLQARGLIKLVEHYQNKGKKFYLSKDFEPSKELTG
        MS+SQGPSSLKRKRPDS+  SGGALIEHEKVL+DLICSKQSMGIWIGDI+RETKYADS+VTKSLK+LQA+G+IKLVEHYQNKGKKFYLSKDFEPSKELTG
Subjt:  MSKSQGPSSLKRKRPDSAHGSGGALIEHEKVLHDLICSKQSMGIWIGDIRRETKYADSVVTKSLKSLQARGLIKLVEHYQNKGKKFYLSKDFEPSKELTG

Query:  GNWYSDGKLDQEYINTLKGFCARMIQKLKLATIEGIVDSFKKSGASKVDLSKEQIEEIVNALVLDNEVMEVKSTGSGEFDFIPVGKICYK-FAKGGVKGE
        GNWYS+GKLD+EYINTLKGFC RMIQK+K+ATIEGIVDSFKKSGASKVDLS+EQI+EIVNALVLDNEVMEVKSTGSGEFDFIP+GKICYK +AKGGVKGE
Subjt:  GNWYSDGKLDQEYINTLKGFCARMIQKLKLATIEGIVDSFKKSGASKVDLSKEQIEEIVNALVLDNEVMEVKSTGSGEFDFIPVGKICYK-FAKGGVKGE

Query:  PKTGAMASIPCGVCPRISHCTPDGIISPRTCVYYTKWLDF
        PKTGAMASIPCGVCPRISHCTP+G+ISPRTCVYYTKWLDF
Subjt:  PKTGAMASIPCGVCPRISHCTPDGIISPRTCVYYTKWLDF

XP_022946967.1 DNA-directed RNA polymerase III subunit rpc6 [Cucurbita moschata]3.4e-12189.54Show/hide
Query:  MSKSQGPSSLKRKRPDSAHGSGGALIEHEKVLHDLICSKQSMGIWIGDIRRETKYADSVVTKSLKSLQARGLIKLVEHYQNKGKKFYLSKDFEPSKELTG
        MS+SQGPSSLKRKRP+ AHG GGALIEHEKVL+DLICSKQSMGIWIGD++RETKY D+VVTKSLK+LQ RGLIKLVEHYQNKGKKFYLSKDFEPSKELTG
Subjt:  MSKSQGPSSLKRKRPDSAHGSGGALIEHEKVLHDLICSKQSMGIWIGDIRRETKYADSVVTKSLKSLQARGLIKLVEHYQNKGKKFYLSKDFEPSKELTG

Query:  GNWYSDGKLDQEYINTLKGFCARMIQKLKLATIEGIVDSFKKSGASKVDLSKEQIEEIVNALVLDNEVMEVKSTGSGEFDFIPVGKICYKFAKGGVKGEP
        GNWYSDGKLD+EYI+TLKGFCARMIQK+K+ATIEGIVDSFKKSGASKVDLS+EQIEEIVNALVLDNEVMEVKSTG+GEFDFIPVGKICYK    GVKGEP
Subjt:  GNWYSDGKLDQEYINTLKGFCARMIQKLKLATIEGIVDSFKKSGASKVDLSKEQIEEIVNALVLDNEVMEVKSTGSGEFDFIPVGKICYKFAKGGVKGEP

Query:  KTGAMASIPCGVCPRISHCTPDGIISPRTCVYYTKWLDF
        KTGAMAS PCGVCPRI+HCTP+GIISPRTCVYYTKWL+F
Subjt:  KTGAMASIPCGVCPRISHCTPDGIISPRTCVYYTKWLDF

XP_022970903.1 DNA-directed RNA polymerase III subunit rpc6 [Cucurbita maxima]2.6e-12189.54Show/hide
Query:  MSKSQGPSSLKRKRPDSAHGSGGALIEHEKVLHDLICSKQSMGIWIGDIRRETKYADSVVTKSLKSLQARGLIKLVEHYQNKGKKFYLSKDFEPSKELTG
        MS+SQGPSSLKRKRP+ AHG GGALIEHEKVL+DLICSKQSMGIWIGD++RETKY D+VVTKSLK+LQARGLIKLVEHYQNKGKKFYLSKDFEPSKELTG
Subjt:  MSKSQGPSSLKRKRPDSAHGSGGALIEHEKVLHDLICSKQSMGIWIGDIRRETKYADSVVTKSLKSLQARGLIKLVEHYQNKGKKFYLSKDFEPSKELTG

Query:  GNWYSDGKLDQEYINTLKGFCARMIQKLKLATIEGIVDSFKKSGASKVDLSKEQIEEIVNALVLDNEVMEVKSTGSGEFDFIPVGKICYKFAKGGVKGEP
        GNWYSDGKLD+EYI+TLKGFCARMIQK+K+ATIEGIVD+FKKSGASKVDLS+EQIEEIVNALVLDNEVMEVKSTG+GEFDFIPVGKICYK    GVKGEP
Subjt:  GNWYSDGKLDQEYINTLKGFCARMIQKLKLATIEGIVDSFKKSGASKVDLSKEQIEEIVNALVLDNEVMEVKSTGSGEFDFIPVGKICYKFAKGGVKGEP

Query:  KTGAMASIPCGVCPRISHCTPDGIISPRTCVYYTKWLDF
        KTGAMAS PCGVCPRI+HCTP+GIISPRTCVYYTKWL+F
Subjt:  KTGAMASIPCGVCPRISHCTPDGIISPRTCVYYTKWLDF

XP_038900531.1 LOW QUALITY PROTEIN: DNA-directed RNA polymerase III subunit RPC6-like [Benincasa hispida]6.8e-11488.66Show/hide
Query:  MSKSQGPSSLKRKRPDSAHGSGGALIEHEKVLHDLICSKQSMGIWIGDIRRETKYADSVVTKSLKSLQARGLIKLVEHYQNKGKKFYLSKDFEPSKELTG
        MSK QGPSSLKRKR DSAHG GGALIEHEKVLHDLICSKQ+MGIWIGDIR+ETKYAD VV K LKSLQARGLIKLVEHYQNKGKKFYLSKDFEPSKELTG
Subjt:  MSKSQGPSSLKRKRPDSAHGSGGALIEHEKVLHDLICSKQSMGIWIGDIRRETKYADSVVTKSLKSLQARGLIKLVEHYQNKGKKFYLSKDFEPSKELTG

Query:  GNWYSDGKLDQEYINTLKGFCARMIQKLKLATIEGIVDSFKKSGASKVDLSKEQIEEIVNALVLDNEVMEVKSTGSGEFDFIPVGKICYKFAKGGVKGEP
        GNWYSDGKLDQEYINTLKGFCARMIQKLK++TIEG V SFKKSG SKVDLS+EQIEEIVNALVLDNEVMEVK TGS EFDFIPV KICYK     VKGEP
Subjt:  GNWYSDGKLDQEYINTLKGFCARMIQKLKLATIEGIVDSFKKSGASKVDLSKEQIEEIVNALVLDNEVMEVKSTGSGEFDFIPVGKICYKFAKGGVKGEP

Query:  KTGAMASIPCGVCPRISHCTPDGIISPRTCVYYTK-WL
        KTGAMASIPCGVCPRISHCT DGIIS RTC+YYTK W+
Subjt:  KTGAMASIPCGVCPRISHCTPDGIISPRTCVYYTK-WL

TrEMBL top hitse value%identityAlignment
A0A1S3BL06 DNA-directed RNA polymerase III subunit rpc6-like1.4e-10478.6Show/hide
Query:  MSKSQGPSSLKRKRPD--SAHGSGGALIEHEKVLHDLICSKQSMGIWIGDIRRETKYADSVVTKSLKSLQARGLIKLVEHYQNKGKKFYLSKDFEPSKEL
        MSKSQGPSSLKRKRPD  + + SGGALI  EKVL+DLICSKQSMGI   D++RETK+A+SVVTKSLKSLQ +GLIK+V+HYQNKGKKFYLS DFEP+KEL
Subjt:  MSKSQGPSSLKRKRPD--SAHGSGGALIEHEKVLHDLICSKQSMGIWIGDIRRETKYADSVVTKSLKSLQARGLIKLVEHYQNKGKKFYLSKDFEPSKEL

Query:  TGGNWYSDGKLDQEYINTLKGFCARMIQKLKLATIEGIVDSFKKSGASKVDLSKEQIEEIVNALVLDNEVMEVKSTGSGEFDFIPVGKICYKFAK--GGV
        TGGNWY DG+LD++YINTLK  CARMIQ+ KL TIEGIV+SFK+SGA KV+LS+EQIEEIVNALVLDN+VMEVKS+G GEF+FIP+GKICYK+    GG+
Subjt:  TGGNWYSDGKLDQEYINTLKGFCARMIQKLKLATIEGIVDSFKKSGASKVDLSKEQIEEIVNALVLDNEVMEVKSTGSGEFDFIPVGKICYKFAK--GGV

Query:  KGEPKTGAMASIPCGVCPRISHCTPDGIISPRTCVYYTKWLDF
        KGEPK GAMASIPCGVCPRI++CTP+GIISP TCVYYTKWLDF
Subjt:  KGEPKTGAMASIPCGVCPRISHCTPDGIISPRTCVYYTKWLDF

A0A5D3D7H7 DNA-directed RNA polymerase III subunit rpc6-like1.4e-10478.6Show/hide
Query:  MSKSQGPSSLKRKRPD--SAHGSGGALIEHEKVLHDLICSKQSMGIWIGDIRRETKYADSVVTKSLKSLQARGLIKLVEHYQNKGKKFYLSKDFEPSKEL
        MSKSQGPSSLKRKRPD  + + SGGALI  EKVL+DLICSKQSMGI   D++RETK+A+SVVTKSLKSLQ +GLIK+V+HYQNKGKKFYLS DFEP+KEL
Subjt:  MSKSQGPSSLKRKRPD--SAHGSGGALIEHEKVLHDLICSKQSMGIWIGDIRRETKYADSVVTKSLKSLQARGLIKLVEHYQNKGKKFYLSKDFEPSKEL

Query:  TGGNWYSDGKLDQEYINTLKGFCARMIQKLKLATIEGIVDSFKKSGASKVDLSKEQIEEIVNALVLDNEVMEVKSTGSGEFDFIPVGKICYKFAK--GGV
        TGGNWY DG+LD++YINTLK  CARMIQ+ KL TIEGIV+SFK+SGA KV+LS+EQIEEIVNALVLDN+VMEVKS+G GEF+FIP+GKICYK+    GG+
Subjt:  TGGNWYSDGKLDQEYINTLKGFCARMIQKLKLATIEGIVDSFKKSGASKVDLSKEQIEEIVNALVLDNEVMEVKSTGSGEFDFIPVGKICYKFAK--GGV

Query:  KGEPKTGAMASIPCGVCPRISHCTPDGIISPRTCVYYTKWLDF
        KGEPK GAMASIPCGVCPRI++CTP+GIISP TCVYYTKWLDF
Subjt:  KGEPKTGAMASIPCGVCPRISHCTPDGIISPRTCVYYTKWLDF

A0A6J1D8D1 DNA-directed RNA polymerase III subunit rpc6 isoform X13.9e-12390.83Show/hide
Query:  MSKSQGPSSLKRKRPDSAHGSGGALIEHEKVLHDLICSKQSMGIWIGDIRRETKYADSVVTKSLKSLQARGLIKLVEHYQNKGKKFYLSKDFEPSKELTG
        MS+SQGPSSLKRKRPDS+  SGGALIEHEKVL+DLICSKQSMGIWIGDI+RETKYADS+VTKSLK+LQA+G+IKLVEHYQNKGKKFYLSKDFEPSKELTG
Subjt:  MSKSQGPSSLKRKRPDSAHGSGGALIEHEKVLHDLICSKQSMGIWIGDIRRETKYADSVVTKSLKSLQARGLIKLVEHYQNKGKKFYLSKDFEPSKELTG

Query:  GNWYSDGKLDQEYINTLKGFCARMIQKLKLATIEGIVDSFKKSGASKVDLSKEQIEEIVNALVLDNEVMEVKSTGSGEFDFIPVGKICYK-FAKGGVKGE
        GNWYS+GKLD+EYINTLKGFC RMIQK+K+ATIEGIVDSFKKSGASKVDLS+EQI+EIVNALVLDNEVMEVKSTGSGEFDFIP+GKICYK +AKGGVKGE
Subjt:  GNWYSDGKLDQEYINTLKGFCARMIQKLKLATIEGIVDSFKKSGASKVDLSKEQIEEIVNALVLDNEVMEVKSTGSGEFDFIPVGKICYK-FAKGGVKGE

Query:  PKTGAMASIPCGVCPRISHCTPDGIISPRTCVYYTKWLDF
        PKTGAMASIPCGVCPRISHCTP+G+ISPRTCVYYTKWLDF
Subjt:  PKTGAMASIPCGVCPRISHCTPDGIISPRTCVYYTKWLDF

A0A6J1G553 DNA-directed RNA polymerase III subunit rpc61.6e-12189.54Show/hide
Query:  MSKSQGPSSLKRKRPDSAHGSGGALIEHEKVLHDLICSKQSMGIWIGDIRRETKYADSVVTKSLKSLQARGLIKLVEHYQNKGKKFYLSKDFEPSKELTG
        MS+SQGPSSLKRKRP+ AHG GGALIEHEKVL+DLICSKQSMGIWIGD++RETKY D+VVTKSLK+LQ RGLIKLVEHYQNKGKKFYLSKDFEPSKELTG
Subjt:  MSKSQGPSSLKRKRPDSAHGSGGALIEHEKVLHDLICSKQSMGIWIGDIRRETKYADSVVTKSLKSLQARGLIKLVEHYQNKGKKFYLSKDFEPSKELTG

Query:  GNWYSDGKLDQEYINTLKGFCARMIQKLKLATIEGIVDSFKKSGASKVDLSKEQIEEIVNALVLDNEVMEVKSTGSGEFDFIPVGKICYKFAKGGVKGEP
        GNWYSDGKLD+EYI+TLKGFCARMIQK+K+ATIEGIVDSFKKSGASKVDLS+EQIEEIVNALVLDNEVMEVKSTG+GEFDFIPVGKICYK    GVKGEP
Subjt:  GNWYSDGKLDQEYINTLKGFCARMIQKLKLATIEGIVDSFKKSGASKVDLSKEQIEEIVNALVLDNEVMEVKSTGSGEFDFIPVGKICYKFAKGGVKGEP

Query:  KTGAMASIPCGVCPRISHCTPDGIISPRTCVYYTKWLDF
        KTGAMAS PCGVCPRI+HCTP+GIISPRTCVYYTKWL+F
Subjt:  KTGAMASIPCGVCPRISHCTPDGIISPRTCVYYTKWLDF

A0A6J1I599 DNA-directed RNA polymerase III subunit rpc61.3e-12189.54Show/hide
Query:  MSKSQGPSSLKRKRPDSAHGSGGALIEHEKVLHDLICSKQSMGIWIGDIRRETKYADSVVTKSLKSLQARGLIKLVEHYQNKGKKFYLSKDFEPSKELTG
        MS+SQGPSSLKRKRP+ AHG GGALIEHEKVL+DLICSKQSMGIWIGD++RETKY D+VVTKSLK+LQARGLIKLVEHYQNKGKKFYLSKDFEPSKELTG
Subjt:  MSKSQGPSSLKRKRPDSAHGSGGALIEHEKVLHDLICSKQSMGIWIGDIRRETKYADSVVTKSLKSLQARGLIKLVEHYQNKGKKFYLSKDFEPSKELTG

Query:  GNWYSDGKLDQEYINTLKGFCARMIQKLKLATIEGIVDSFKKSGASKVDLSKEQIEEIVNALVLDNEVMEVKSTGSGEFDFIPVGKICYKFAKGGVKGEP
        GNWYSDGKLD+EYI+TLKGFCARMIQK+K+ATIEGIVD+FKKSGASKVDLS+EQIEEIVNALVLDNEVMEVKSTG+GEFDFIPVGKICYK    GVKGEP
Subjt:  GNWYSDGKLDQEYINTLKGFCARMIQKLKLATIEGIVDSFKKSGASKVDLSKEQIEEIVNALVLDNEVMEVKSTGSGEFDFIPVGKICYKFAKGGVKGEP

Query:  KTGAMASIPCGVCPRISHCTPDGIISPRTCVYYTKWLDF
        KTGAMAS PCGVCPRI+HCTP+GIISPRTCVYYTKWL+F
Subjt:  KTGAMASIPCGVCPRISHCTPDGIISPRTCVYYTKWLDF

SwissProt top hitse value%identityAlignment
Q2T9S3 DNA-directed RNA polymerase III subunit RPC61.8e-2431.44Show/hide
Query:  EKVLHDLICSKQSMGIWIGDIRRETKYADSVVTKSLKSLQARGLIKLVEHYQNKGKKFYLSKDFEPSKELTGGNWYSDGKLDQEYINTLKGFCARMIQKL
        EK+++ +I    + GIW  DIR ++    + + K LK+L+++ LIK V+      KK Y+  + +P + +TGG WYSD   + E++  L   C + +Q  
Subjt:  EKVLHDLICSKQSMGIWIGDIRRETKYADSVVTKSLKSLQARGLIKLVEHYQNKGKKFYLSKDFEPSKELTGGNWYSDGKLDQEYINTLKGFCARMIQKL

Query:  KLATIEGIVD-------SFKKS----------GASKVDLSKEQIEEIVNALVLDNEV-MEVKSTGSGEFDFIPVGKICYKFAKGGVKGEPKTGAMASIPC
             E   +       SF  S          G SKV+LS E IE I+N L+ D +V M + +   G    +      Y+     +   P TG +   PC
Subjt:  KLATIEGIVD-------SFKKS----------GASKVDLSKEQIEEIVNALVLDNEV-MEVKSTGSGEFDFIPVGKICYKFAKGGVKGEPKTGAMASIPC

Query:  GVCPRISHCTPDGIISPRTCVYYTKWLDF
        G+CP    C   G ISP  C+Y T+WL+F
Subjt:  GVCPRISHCTPDGIISPRTCVYYTKWLDF

Q86JM3 DNA-directed RNA polymerase III subunit rpc61.0e-2428.75Show/hide
Query:  MSKSQGPSSLKRKRPDSAHGSGGALIEHEKVLHDLICSKQSMGIWIGDIRRETKYADSVVTKSLKSLQARGLIKLVEHYQNKGKKFYLSKDFEPSKELTG
        +  S   +S K   P+      G  +E + +++ LI +  + G W  +++  + Y    +TK LK+L++R LIK V+  Q+  KK Y+  + EPS+E+TG
Subjt:  MSKSQGPSSLKRKRPDSAHGSGGALIEHEKVLHDLICSKQSMGIWIGDIRRETKYADSVVTKSLKSLQARGLIKLVEHYQNKGKKFYLSKDFEPSKELTG

Query:  GNWYSDGKLDQEYINTLKGFCARMIQKLKLATIEGIVDSFKK--SGASKVDLSKEQIEEIVNALVLDNEVMEVKSTGSGEFDFIPVGKICYKFAKGGVKG
        G  YSD   D +YI  +K      +       +  I+   +K    A+   L  E I+ +VN ++ D ++ E++ T  G       G I YK  K  +  
Subjt:  GNWYSDGKLDQEYINTLKGFCARMIQKLKLATIEGIVDSFKK--SGASKVDLSKEQIEEIVNALVLDNEVMEVKSTGSGEFDFIPVGKICYKFAKGGVKG

Query:  EPKTGAMASIPCGVCPRISHCTPDGIISPRTCVYYTKWLD
                ++PCG CP    C+ +G++SP+ CVY+ ++L+
Subjt:  EPKTGAMASIPCGVCPRISHCTPDGIISPRTCVYYTKWLD

Q921X6 DNA-directed RNA polymerase III subunit RPC62.3e-2431.44Show/hide
Query:  EKVLHDLICSKQSMGIWIGDIRRETKYADSVVTKSLKSLQARGLIKLVEHYQNKGKKFYLSKDFEPSKELTGGNWYSDGKLDQEYINTLKGFCARMIQKL
        EK+++ +I    + GIW  DIR ++    + + K LK+L+++ LIK V+      KK Y+  + +P + +TGG WYSD   + E++  L   C + +Q  
Subjt:  EKVLHDLICSKQSMGIWIGDIRRETKYADSVVTKSLKSLQARGLIKLVEHYQNKGKKFYLSKDFEPSKELTGGNWYSDGKLDQEYINTLKGFCARMIQKL

Query:  KLATIEGIVD-------SFKKS----------GASKVDLSKEQIEEIVNALVLDNEV-MEVKSTGSGEFDFIPVGKICYKFAKGGVKGEPKTGAMASIPC
             E   +       SF  S          G SKV+LS E IE I+N L+ D +V M + +   G    +      Y+     +   P TG + + PC
Subjt:  KLATIEGIVD-------SFKKS----------GASKVDLSKEQIEEIVNALVLDNEV-MEVKSTGSGEFDFIPVGKICYKFAKGGVKGEPKTGAMASIPC

Query:  GVCPRISHCTPDGIISPRTCVYYTKWLDF
        G+CP    C   G ISP  C+Y T+WL+F
Subjt:  GVCPRISHCTPDGIISPRTCVYYTKWLDF

Q9H1D9 DNA-directed RNA polymerase III subunit RPC61.8e-2431.44Show/hide
Query:  EKVLHDLICSKQSMGIWIGDIRRETKYADSVVTKSLKSLQARGLIKLVEHYQNKGKKFYLSKDFEPSKELTGGNWYSDGKLDQEYINTLKGFCARMIQKL
        EK+++ +I    + GIW  DIR ++    + + K LK+L+++ LIK V+      KK Y+  + +P + +TGG WYSD   + E++  L   C + +Q  
Subjt:  EKVLHDLICSKQSMGIWIGDIRRETKYADSVVTKSLKSLQARGLIKLVEHYQNKGKKFYLSKDFEPSKELTGGNWYSDGKLDQEYINTLKGFCARMIQKL

Query:  KLATIEGIVD-------SFKKS----------GASKVDLSKEQIEEIVNALVLDNEV-MEVKSTGSGEFDFIPVGKICYKFAKGGVKGEPKTGAMASIPC
             E   +       SF  S          G SKV+LS E IE I+N L+ D +V M + +   G    +      Y+     +   P TG +   PC
Subjt:  KLATIEGIVD-------SFKKS----------GASKVDLSKEQIEEIVNALVLDNEV-MEVKSTGSGEFDFIPVGKICYKFAKGGVKGEPKTGAMASIPC

Query:  GVCPRISHCTPDGIISPRTCVYYTKWLDF
        G+CP    C   G ISP  C+Y T+WL+F
Subjt:  GVCPRISHCTPDGIISPRTCVYYTKWLDF

Q9VD25 Probable DNA-directed RNA polymerase III subunit RPC66.4e-2228.19Show/hide
Query:  EKVLHDLICSKQSMGIWIGDIRRETKYADSVVTKSLKSLQARGLIKLVEHYQNKGKKFYLSKDFEPSKELTGGNWYSDGKLDQEYINTLKGFCARMIQ--
        EKV++ ++    + GIWI DIR ++      + K LK+L+ + LIK V+      KK Y+  + EP   +TGG WY D   + E+++ L   C R +Q  
Subjt:  EKVLHDLICSKQSMGIWIGDIRRETKYADSVVTKSLKSLQARGLIKLVEHYQNKGKKFYLSKDFEPSKELTGGNWYSDGKLDQEYINTLKGFCARMIQ--

Query:  ---------------KLKLATIEGIVDSFKKSGASKVDLSKEQIEEIVNALVLDNEVMEVKSTGSGEFDFIPVGKICYKFAKGGVKGEPKTGAMASIPCG
                       ++   T+  +       G SKV+L++  +E I+  +V D     V+            G   Y+     +   P TG +  +PCG
Subjt:  ---------------KLKLATIEGIVDSFKKSGASKVDLSKEQIEEIVNALVLDNEVMEVKSTGSGEFDFIPVGKICYKFAKGGVKGEPKTGAMASIPCG

Query:  VCPRISHCTPDGIISPRTCVYYTKWLD
        +CP I +C+  G ++  TC Y   WLD
Subjt:  VCPRISHCTPDGIISPRTCVYYTKWLD

Arabidopsis top hitse value%identityAlignment
AT5G23710.1 DNA binding;DNA-directed RNA polymerases1.0e-5145.69Show/hide
Query:  KRKRPDSAHGSGGALIEHEKVLHDLICSKQSMGIWIGDIRRETKYADSVVTKSLKSLQARGLIKLVEHYQNKGKKFYLSKDFEPSKELTGGNWYSDGKLD
        KRKRPD     G     HEK L DLI   Q  G  + +++RE     ++VT+ + SL+ + LIK V +  NKG K YL+ +FEP  ELTGG WY+DG LD
Subjt:  KRKRPDSAHGSGGALIEHEKVLHDLICSKQSMGIWIGDIRRETKYADSVVTKSLKSLQARGLIKLVEHYQNKGKKFYLSKDFEPSKELTGGNWYSDGKLD

Query:  QEYINTLKGFCARMIQ--KLKLATIEGIVDSFKKSGASKVDLSKEQIEEIVNALVLDNEVMEVKSTGSGEFDFIPVGKICYKF-AKGGVKGEPKTGAMAS
           I  LK  C  +++  + ++ T+E +   F K    +  LS +Q +EI+  L+LDN +MEVKS G  EF    +G++CY+   K    GEP+ GA AS
Subjt:  QEYINTLKGFCARMIQ--KLKLATIEGIVDSFKKSGASKVDLSKEQIEEIVNALVLDNEVMEVKSTGSGEFDFIPVGKICYKF-AKGGVKGEPKTGAMAS

Query:  IPCGVCPRISHCTPDGIISPRTCVYYTKWLDF
        IPCGVCP I+ C+PDG+ISP TCVY+ KWLDF
Subjt:  IPCGVCPRISHCTPDGIISPRTCVYYTKWLDF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCAAATCACAAGGGCCTTCATCACTCAAAAGAAAAAGACCAGACTCAGCTCATGGCTCTGGAGGAGCTCTCATTGAGCATGAAAAAGTGCTCCATGATCTGATTTG
CAGCAAACAAAGCATGGGGATTTGGATTGGAGACATTAGAAGAGAAACAAAATATGCTGACAGTGTGGTAACAAAATCACTCAAGTCCCTTCAAGCTAGAGGCCTGATTA
AACTAGTTGAACACTATCAAAACAAAGGGAAGAAATTCTACCTGTCAAAAGATTTCGAACCATCGAAAGAACTGACTGGCGGTAATTGGTATAGCGACGGGAAGCTCGAC
CAAGAATACATCAATACTCTTAAAGGGTTCTGTGCTAGAATGATACAGAAGTTGAAGTTGGCTACAATTGAAGGAATTGTAGATTCTTTCAAAAAGAGTGGAGCATCCAA
AGTGGACTTGTCTAAGGAGCAAATTGAAGAGATTGTAAATGCTTTGGTGTTGGACAATGAAGTTATGGAGGTAAAGAGCACTGGTTCAGGGGAGTTTGATTTTATTCCTG
TTGGGAAGATTTGTTATAAGTTTGCTAAAGGAGGTGTTAAAGGGGAGCCCAAAACAGGAGCCATGGCTTCTATTCCTTGTGGAGTTTGTCCAAGGATTAGTCATTGTACC
CCAGATGGCATCATTTCCCCTAGAACTTGTGTGTATTACACCAAGTGGTTAGATTTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGAGCAAATCACAAGGGCCTTCATCACTCAAAAGAAAAAGACCAGACTCAGCTCATGGCTCTGGAGGAGCTCTCATTGAGCATGAAAAAGTGCTCCATGATCTGATTTG
CAGCAAACAAAGCATGGGGATTTGGATTGGAGACATTAGAAGAGAAACAAAATATGCTGACAGTGTGGTAACAAAATCACTCAAGTCCCTTCAAGCTAGAGGCCTGATTA
AACTAGTTGAACACTATCAAAACAAAGGGAAGAAATTCTACCTGTCAAAAGATTTCGAACCATCGAAAGAACTGACTGGCGGTAATTGGTATAGCGACGGGAAGCTCGAC
CAAGAATACATCAATACTCTTAAAGGGTTCTGTGCTAGAATGATACAGAAGTTGAAGTTGGCTACAATTGAAGGAATTGTAGATTCTTTCAAAAAGAGTGGAGCATCCAA
AGTGGACTTGTCTAAGGAGCAAATTGAAGAGATTGTAAATGCTTTGGTGTTGGACAATGAAGTTATGGAGGTAAAGAGCACTGGTTCAGGGGAGTTTGATTTTATTCCTG
TTGGGAAGATTTGTTATAAGTTTGCTAAAGGAGGTGTTAAAGGGGAGCCCAAAACAGGAGCCATGGCTTCTATTCCTTGTGGAGTTTGTCCAAGGATTAGTCATTGTACC
CCAGATGGCATCATTTCCCCTAGAACTTGTGTGTATTACACCAAGTGGTTAGATTTTTAA
Protein sequenceShow/hide protein sequence
MSKSQGPSSLKRKRPDSAHGSGGALIEHEKVLHDLICSKQSMGIWIGDIRRETKYADSVVTKSLKSLQARGLIKLVEHYQNKGKKFYLSKDFEPSKELTGGNWYSDGKLD
QEYINTLKGFCARMIQKLKLATIEGIVDSFKKSGASKVDLSKEQIEEIVNALVLDNEVMEVKSTGSGEFDFIPVGKICYKFAKGGVKGEPKTGAMASIPCGVCPRISHCT
PDGIISPRTCVYYTKWLDF