; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10001762 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10001762
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Descriptionnuclear transport factor 2-like
Genome locationChr11:249571..250568
RNA-Seq ExpressionHG10001762
SyntenyHG10001762
Gene Ontology termsGO:0006913 - nucleocytoplasmic transport (biological process)
GO:0044613 - nuclear pore central transport channel (cellular component)
InterPro domainsIPR002075 - Nuclear transport factor 2
IPR018222 - Nuclear transport factor 2, eukaryote
IPR032710 - NTF2-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KGN53044.1 hypothetical protein Csa_014783 [Cucumis sativus]2.3e-4898Show/hide
Query:  MDPDAVAKAFVDHYYSTFDANRAGLGNLYQDNSMLTFEGQKIQGSPNIVAKLSSLPFQQCKHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQV
        MDPDAVAKAFVDHYYSTFDANRA LGNLYQDNSMLTFEGQKIQGSPNIVAKLSSLPFQQCKHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQ+
Subjt:  MDPDAVAKAFVDHYYSTFDANRAGLGNLYQDNSMLTFEGQKIQGSPNIVAKLSSLPFQQCKHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQV

XP_004152114.2 nuclear transport factor 2B [Cucumis sativus]2.3e-4898Show/hide
Query:  MDPDAVAKAFVDHYYSTFDANRAGLGNLYQDNSMLTFEGQKIQGSPNIVAKLSSLPFQQCKHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQV
        MDPDAVAKAFVDHYYSTFDANRA LGNLYQDNSMLTFEGQKIQGSPNIVAKLSSLPFQQCKHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQ+
Subjt:  MDPDAVAKAFVDHYYSTFDANRAGLGNLYQDNSMLTFEGQKIQGSPNIVAKLSSLPFQQCKHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQV

XP_022956152.1 nuclear transport factor 2B [Cucurbita moschata]7.5e-4795Show/hide
Query:  MDPDAVAKAFVDHYYSTFDANRAGLGNLYQDNSMLTFEGQKIQGSPNIVAKLSSLPFQQCKHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQV
        MDPDAVAKAFVDHYYSTFDANRAGL NLYQD SMLTFEGQKIQGSPNIVAKL+SLPFQQC+HSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQ+
Subjt:  MDPDAVAKAFVDHYYSTFDANRAGLGNLYQDNSMLTFEGQKIQGSPNIVAKLSSLPFQQCKHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQV

XP_022979987.1 nuclear transport factor 2B [Cucurbita maxima]1.5e-4796Show/hide
Query:  MDPDAVAKAFVDHYYSTFDANRAGLGNLYQDNSMLTFEGQKIQGSPNIVAKLSSLPFQQCKHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQV
        MDPDAVAKAFVDHYYSTFDANRAGL NLYQDNSMLTFEGQKIQGSPNIVAKL+SLPFQQC+HSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQ+
Subjt:  MDPDAVAKAFVDHYYSTFDANRAGLGNLYQDNSMLTFEGQKIQGSPNIVAKLSSLPFQQCKHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQV

XP_023526029.1 nuclear transport factor 2B [Cucurbita pepo subsp. pepo]7.5e-4795Show/hide
Query:  MDPDAVAKAFVDHYYSTFDANRAGLGNLYQDNSMLTFEGQKIQGSPNIVAKLSSLPFQQCKHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQV
        MDPDAVAKAFVDHYYSTFDANRAGL NLYQD SMLTFEGQKIQGSPNIVAKL+SLPFQQC+HSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQ+
Subjt:  MDPDAVAKAFVDHYYSTFDANRAGLGNLYQDNSMLTFEGQKIQGSPNIVAKLSSLPFQQCKHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQV

TrEMBL top hitse value%identityAlignment
A0A0A0KW20 NTF2 domain-containing protein1.1e-4898Show/hide
Query:  MDPDAVAKAFVDHYYSTFDANRAGLGNLYQDNSMLTFEGQKIQGSPNIVAKLSSLPFQQCKHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQV
        MDPDAVAKAFVDHYYSTFDANRA LGNLYQDNSMLTFEGQKIQGSPNIVAKLSSLPFQQCKHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQ+
Subjt:  MDPDAVAKAFVDHYYSTFDANRAGLGNLYQDNSMLTFEGQKIQGSPNIVAKLSSLPFQQCKHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQV

A0A438DXC4 Nuclear transport factor 2A1.2e-4590.1Show/hide
Query:  MDPDAVAKAFVDHYYSTFDANRAGLGNLYQDNSMLTFEGQKIQGSPNIVAKLSSLPFQQCKHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQV
        MDPDAVAKAFV+HYYSTFDANRA L NLYQ++SMLTFEGQKIQGSPNIVAKL+SLPFQQC+HS++TVDCQPSGP GGMLVFVSGNLQLAGEQHALKFSQV
Subjt:  MDPDAVAKAFVDHYYSTFDANRAGLGNLYQDNSMLTFEGQKIQGSPNIVAKLSSLPFQQCKHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQV

Query:  T
        T
Subjt:  T

A0A6J1F2G7 nuclear transport factor 2B-like1.2e-4592Show/hide
Query:  MDPDAVAKAFVDHYYSTFDANRAGLGNLYQDNSMLTFEGQKIQGSPNIVAKLSSLPFQQCKHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQV
        MDPDAVAKAFVDHYYSTFDANR+GL NLYQDNSMLTFEGQKIQGS NIVAKL+SLPFQQC+HSVSTVDCQPSGP+GG+LVFVSGNLQLAGEQHALKFSQ+
Subjt:  MDPDAVAKAFVDHYYSTFDANRAGLGNLYQDNSMLTFEGQKIQGSPNIVAKLSSLPFQQCKHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQV

A0A6J1GVJ2 nuclear transport factor 2B3.7e-4795Show/hide
Query:  MDPDAVAKAFVDHYYSTFDANRAGLGNLYQDNSMLTFEGQKIQGSPNIVAKLSSLPFQQCKHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQV
        MDPDAVAKAFVDHYYSTFDANRAGL NLYQD SMLTFEGQKIQGSPNIVAKL+SLPFQQC+HSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQ+
Subjt:  MDPDAVAKAFVDHYYSTFDANRAGLGNLYQDNSMLTFEGQKIQGSPNIVAKLSSLPFQQCKHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQV

A0A6J1IQ79 nuclear transport factor 2B7.4e-4896Show/hide
Query:  MDPDAVAKAFVDHYYSTFDANRAGLGNLYQDNSMLTFEGQKIQGSPNIVAKLSSLPFQQCKHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQV
        MDPDAVAKAFVDHYYSTFDANRAGL NLYQDNSMLTFEGQKIQGSPNIVAKL+SLPFQQC+HSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQ+
Subjt:  MDPDAVAKAFVDHYYSTFDANRAGLGNLYQDNSMLTFEGQKIQGSPNIVAKLSSLPFQQCKHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQV

SwissProt top hitse value%identityAlignment
Q6FRC6 Nuclear transport factor 26.0e-2350Show/hide
Query:  MDPDAVAKAFVDHYYSTFDANRAGLGNLYQDNSMLTFEGQKIQGSPNIVAKLSSLPFQQCKHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQV
        MD +A+A+ F + YY+ FD++R+ LGNLY+D SMLTFE  ++QG+ +IV KL SLPFQ+  H ++T+D QP+ P G +LV ++G+L +  EQ+  +FSQV
Subjt:  MDPDAVAKAFVDHYYSTFDANRAGLGNLYQDNSMLTFEGQKIQGSPNIVAKLSSLPFQQCKHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQV

Q75AA5 Nuclear transport factor 21.6e-2351Show/hide
Query:  MDPDAVAKAFVDHYYSTFDANRAGLGNLYQDNSMLTFEGQKIQGSPNIVAKLSSLPFQQCKHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQV
        MD  A+A+ F + YY+ FD +R+ LGNLY+D SMLTFE  ++QG+ +IV KL SLPFQ+ +H ++T+D QP+ P G +LV ++G+L +  EQ+A +FSQV
Subjt:  MDPDAVAKAFVDHYYSTFDANRAGLGNLYQDNSMLTFEGQKIQGSPNIVAKLSSLPFQQCKHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQV

Q9C7F5 Nuclear transport factor 2B1.5e-4282Show/hide
Query:  MDPDAVAKAFVDHYYSTFDANRAGLGNLYQDNSMLTFEGQKIQGSPNIVAKLSSLPFQQCKHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQV
        MDPDAV+KAFV+HYYSTFD NR GL  LYQ+ SMLTFEGQKIQG  +IVAKL+SLPFQQCKH +STVDCQPSGP  GMLVFVSGNLQLAGE+HALKFSQ+
Subjt:  MDPDAVAKAFVDHYYSTFDANRAGLGNLYQDNSMLTFEGQKIQGSPNIVAKLSSLPFQQCKHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQV

Q9FZK4 Nuclear transport factor 2A3.3e-4582.86Show/hide
Query:  MDPDAVAKAFVDHYYSTFDANRAGLGNLYQDNSMLTFEGQKIQGSPNIVAKLSSLPFQQCKHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQV
        MDPDAVAKAFV+HYYSTFDANR GL +LYQ+ SMLTFEGQKIQGS NIVAKL+ LPFQQCKH+++TVDCQPSGP GGMLVFVSGNLQLAGEQHALKFSQ+
Subjt:  MDPDAVAKAFVDHYYSTFDANRAGLGNLYQDNSMLTFEGQKIQGSPNIVAKLSSLPFQQCKHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQV

Query:  TDKLS
           +S
Subjt:  TDKLS

Q9XJ54 Nuclear transport factor 22.9e-3367Show/hide
Query:  MDPDAVAKAFVDHYYSTFDANRAGLGNLYQDNSMLTFEGQKIQGSPNIVAKLSSLPFQQCKHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQV
        MD DAVAKAFV+HYY TFD NR  L +LYQD SMLTFEGQ+  G+  I  KL SLPF QC H ++TVDCQPSGP GGMLVFVSG+L+   ++H LKFSQ+
Subjt:  MDPDAVAKAFVDHYYSTFDANRAGLGNLYQDNSMLTFEGQKIQGSPNIVAKLSSLPFQQCKHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQV

Arabidopsis top hitse value%identityAlignment
AT1G11570.1 NTF2-like2.1e-2659Show/hide
Query:  DAVAKAFVDHYYSTFDANRAGLGNLYQDNSMLTFEGQKIQGSPNIVAKLSSLPFQQCKHSVSTVDCQPS---GPTGGMLVFVSGNLQLAGEQHALKFSQV
        + VA AFV+HYY  FD +R+ L +LY   S+LTFEGQ I G  NI  KL  LPF QC H +STVD QPS   G  GG+LVFVSG++QL GE H L+FSQV
Subjt:  DAVAKAFVDHYYSTFDANRAGLGNLYQDNSMLTFEGQKIQGSPNIVAKLSSLPFQQCKHSVSTVDCQPS---GPTGGMLVFVSGNLQLAGEQHALKFSQV

AT1G11570.2 NTF2-like2.7e-2657.41Show/hide
Query:  DAVAKAFVDHYYSTFDANRAGLGNLYQDNSMLTFEGQKIQGSPNIVAKLSSLPFQQCKHSVSTVDCQPS---GPTGGMLVFVSGNLQLAGEQHALKFSQV
        + VA AFV+HYY  FD +R+ L +LY   S+LTFEGQ I G  NI  KL  LPF QC H +STVD QPS   G  GG+LVFVSG++QL GE H L+FSQ 
Subjt:  DAVAKAFVDHYYSTFDANRAGLGNLYQDNSMLTFEGQKIQGSPNIVAKLSSLPFQQCKHSVSTVDCQPS---GPTGGMLVFVSGNLQLAGEQHALKFSQV

Query:  TDKLSPAL
        T  L P L
Subjt:  TDKLSPAL

AT1G27310.1 nuclear transport factor 2A2.3e-4682.86Show/hide
Query:  MDPDAVAKAFVDHYYSTFDANRAGLGNLYQDNSMLTFEGQKIQGSPNIVAKLSSLPFQQCKHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQV
        MDPDAVAKAFV+HYYSTFDANR GL +LYQ+ SMLTFEGQKIQGS NIVAKL+ LPFQQCKH+++TVDCQPSGP GGMLVFVSGNLQLAGEQHALKFSQ+
Subjt:  MDPDAVAKAFVDHYYSTFDANRAGLGNLYQDNSMLTFEGQKIQGSPNIVAKLSSLPFQQCKHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQV

Query:  TDKLS
           +S
Subjt:  TDKLS

AT1G27970.1 nuclear transport factor 2B1.1e-4382Show/hide
Query:  MDPDAVAKAFVDHYYSTFDANRAGLGNLYQDNSMLTFEGQKIQGSPNIVAKLSSLPFQQCKHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQV
        MDPDAV+KAFV+HYYSTFD NR GL  LYQ+ SMLTFEGQKIQG  +IVAKL+SLPFQQCKH +STVDCQPSGP  GMLVFVSGNLQLAGE+HALKFSQ+
Subjt:  MDPDAVAKAFVDHYYSTFDANRAGLGNLYQDNSMLTFEGQKIQGSPNIVAKLSSLPFQQCKHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQV

AT1G27970.2 nuclear transport factor 2B1.1e-4382Show/hide
Query:  MDPDAVAKAFVDHYYSTFDANRAGLGNLYQDNSMLTFEGQKIQGSPNIVAKLSSLPFQQCKHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQV
        MDPDAV+KAFV+HYYSTFD NR GL  LYQ+ SMLTFEGQKIQG  +IVAKL+SLPFQQCKH +STVDCQPSGP  GMLVFVSGNLQLAGE+HALKFSQ+
Subjt:  MDPDAVAKAFVDHYYSTFDANRAGLGNLYQDNSMLTFEGQKIQGSPNIVAKLSSLPFQQCKHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATCCCGACGCCGTGGCTAAGGCATTCGTCGATCATTATTACTCCACCTTCGACGCCAATCGAGCCGGTCTTGGTAATCTCTACCAGGACAATTCCATGTTGACATT
TGAAGGTCAGAAGATCCAAGGCTCACCTAATATCGTAGCCAAGCTCTCTAGCCTTCCCTTCCAGCAGTGCAAGCACTCCGTTAGCACCGTCGATTGCCAGCCTTCCGGTC
CCACTGGTGGCATGCTTGTCTTCGTCAGCGGCAATCTTCAGCTCGCTGGAGAACAACATGCTCTCAAATTCAGTCAGGTGACTGATAAGCTTTCTCCCGCTCTTCTGTTC
GAACACAAGAATGCCACTGGGTTCCTTCCATGTGTCTTTTTTCCCCTAGTGTATATGCTTGTTACAATTTCCCTGGCTTATTCTGATGATATGGTTGAAACAATGACGAA
TTGA
mRNA sequenceShow/hide mRNA sequence
ATGGATCCCGACGCCGTGGCTAAGGCATTCGTCGATCATTATTACTCCACCTTCGACGCCAATCGAGCCGGTCTTGGTAATCTCTACCAGGACAATTCCATGTTGACATT
TGAAGGTCAGAAGATCCAAGGCTCACCTAATATCGTAGCCAAGCTCTCTAGCCTTCCCTTCCAGCAGTGCAAGCACTCCGTTAGCACCGTCGATTGCCAGCCTTCCGGTC
CCACTGGTGGCATGCTTGTCTTCGTCAGCGGCAATCTTCAGCTCGCTGGAGAACAACATGCTCTCAAATTCAGTCAGGTGACTGATAAGCTTTCTCCCGCTCTTCTGTTC
GAACACAAGAATGCCACTGGGTTCCTTCCATGTGTCTTTTTTCCCCTAGTGTATATGCTTGTTACAATTTCCCTGGCTTATTCTGATGATATGGTTGAAACAATGACGAA
TTGA
Protein sequenceShow/hide protein sequence
MDPDAVAKAFVDHYYSTFDANRAGLGNLYQDNSMLTFEGQKIQGSPNIVAKLSSLPFQQCKHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQVTDKLSPALLF
EHKNATGFLPCVFFPLVYMLVTISLAYSDDMVETMTN