; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10001840 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10001840
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionRab family
Genome locationChr11:956290..956583
RNA-Seq ExpressionHG10001840
SyntenyHG10001840
Gene Ontology termsGO:0006886 - intracellular protein transport (biological process)
GO:0012505 - endomembrane system (cellular component)
GO:0003924 - GTPase activity (molecular function)
GO:0005525 - GTP binding (molecular function)
InterPro domainsIPR001806 - Small GTPase
IPR027417 - P-loop containing nucleoside triphosphate hydrolase


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6597626.1 Ras-related protein RABA5d, partial [Cucurbita argyrosperma subsp. sororia]6.3e-4294.79Show/hide
Query:  MLVGNKCDLENIRDVTVEEGTSLAEAEGLFFMETSALDSTNVKRAFEIVIREIYNNVSRKVLNSDTYKAELSVNRVSLVNNGGSKQSEGYFSCCSR
        MLVGNKCDL+NIRDV++EEGTSLAEAEGLFFMETSALDSTNVKRAFEIVIREIYNNVSRKVLNSDTYKAELSVNRVSLVNNGGSKQSE Y SCCSR
Subjt:  MLVGNKCDLENIRDVTVEEGTSLAEAEGLFFMETSALDSTNVKRAFEIVIREIYNNVSRKVLNSDTYKAELSVNRVSLVNNGGSKQSEGYFSCCSR

XP_004152077.1 ras-related protein RABA5d [Cucumis sativus]2.6e-4396.91Show/hide
Query:  MMLVGNKCDLENIRDVTVEEGTSLAEAEGLFFMETSALDSTNVKRAFEIVIREIYNNVSRKVLNSDTYKAELSVNRVSLVNNGGSKQSEGYFSCCSR
        MMLVGNKCDLENIRDV+VE+GTSLAEAEGLFFMETSALDSTNVKRAFEIVIREIYNNVSRKVLNSDTYKAELSVNRVSLVNNGGSKQSEGY SCCSR
Subjt:  MMLVGNKCDLENIRDVTVEEGTSLAEAEGLFFMETSALDSTNVKRAFEIVIREIYNNVSRKVLNSDTYKAELSVNRVSLVNNGGSKQSEGYFSCCSR

XP_008453919.1 PREDICTED: ras-related protein RABA5d [Cucumis melo]3.9e-4498.97Show/hide
Query:  MMLVGNKCDLENIRDVTVEEGTSLAEAEGLFFMETSALDSTNVKRAFEIVIREIYNNVSRKVLNSDTYKAELSVNRVSLVNNGGSKQSEGYFSCCSR
        MMLVGNKCDLENIRDVTVEEGTSLAEAEGLFFMETSALDSTNVKRAFEIVIREIYNNVSRKVLNSDTYKAELSVNRVSLVNNGGSKQSEGY SCCSR
Subjt:  MMLVGNKCDLENIRDVTVEEGTSLAEAEGLFFMETSALDSTNVKRAFEIVIREIYNNVSRKVLNSDTYKAELSVNRVSLVNNGGSKQSEGYFSCCSR

XP_022932589.1 ras-related protein RABA5d-like [Cucurbita moschata]6.3e-4294.79Show/hide
Query:  MLVGNKCDLENIRDVTVEEGTSLAEAEGLFFMETSALDSTNVKRAFEIVIREIYNNVSRKVLNSDTYKAELSVNRVSLVNNGGSKQSEGYFSCCSR
        MLVGNKCDL+NIRDV++EEGTSLAEAEGLFFMETSALDSTNVKRAFEIVIREIYNNVSRKVLNSDTYKAELSVNRVSLVNNGGSKQSE Y SCCSR
Subjt:  MLVGNKCDLENIRDVTVEEGTSLAEAEGLFFMETSALDSTNVKRAFEIVIREIYNNVSRKVLNSDTYKAELSVNRVSLVNNGGSKQSEGYFSCCSR

XP_038876476.1 ras-related protein RABA5d-like [Benincasa hispida]7.9e-45100Show/hide
Query:  MMLVGNKCDLENIRDVTVEEGTSLAEAEGLFFMETSALDSTNVKRAFEIVIREIYNNVSRKVLNSDTYKAELSVNRVSLVNNGGSKQSEGYFSCCSR
        MMLVGNKCDLENIRDVTVEEGTSLAEAEGLFFMETSALDSTNVKRAFEIVIREIYNNVSRKVLNSDTYKAELSVNRVSLVNNGGSKQSEGYFSCCSR
Subjt:  MMLVGNKCDLENIRDVTVEEGTSLAEAEGLFFMETSALDSTNVKRAFEIVIREIYNNVSRKVLNSDTYKAELSVNRVSLVNNGGSKQSEGYFSCCSR

TrEMBL top hitse value%identityAlignment
A0A0A0KU21 Uncharacterized protein1.2e-4396.91Show/hide
Query:  MMLVGNKCDLENIRDVTVEEGTSLAEAEGLFFMETSALDSTNVKRAFEIVIREIYNNVSRKVLNSDTYKAELSVNRVSLVNNGGSKQSEGYFSCCSR
        MMLVGNKCDLENIRDV+VE+GTSLAEAEGLFFMETSALDSTNVKRAFEIVIREIYNNVSRKVLNSDTYKAELSVNRVSLVNNGGSKQSEGY SCCSR
Subjt:  MMLVGNKCDLENIRDVTVEEGTSLAEAEGLFFMETSALDSTNVKRAFEIVIREIYNNVSRKVLNSDTYKAELSVNRVSLVNNGGSKQSEGYFSCCSR

A0A1S3BXI0 ras-related protein RABA5d1.9e-4498.97Show/hide
Query:  MMLVGNKCDLENIRDVTVEEGTSLAEAEGLFFMETSALDSTNVKRAFEIVIREIYNNVSRKVLNSDTYKAELSVNRVSLVNNGGSKQSEGYFSCCSR
        MMLVGNKCDLENIRDVTVEEGTSLAEAEGLFFMETSALDSTNVKRAFEIVIREIYNNVSRKVLNSDTYKAELSVNRVSLVNNGGSKQSEGY SCCSR
Subjt:  MMLVGNKCDLENIRDVTVEEGTSLAEAEGLFFMETSALDSTNVKRAFEIVIREIYNNVSRKVLNSDTYKAELSVNRVSLVNNGGSKQSEGYFSCCSR

A0A5A7TS03 Ras-related protein RABA5d1.9e-4498.97Show/hide
Query:  MMLVGNKCDLENIRDVTVEEGTSLAEAEGLFFMETSALDSTNVKRAFEIVIREIYNNVSRKVLNSDTYKAELSVNRVSLVNNGGSKQSEGYFSCCSR
        MMLVGNKCDLENIRDVTVEEGTSLAEAEGLFFMETSALDSTNVKRAFEIVIREIYNNVSRKVLNSDTYKAELSVNRVSLVNNGGSKQSEGY SCCSR
Subjt:  MMLVGNKCDLENIRDVTVEEGTSLAEAEGLFFMETSALDSTNVKRAFEIVIREIYNNVSRKVLNSDTYKAELSVNRVSLVNNGGSKQSEGYFSCCSR

A0A6J1EXF0 ras-related protein RABA5d-like3.0e-4294.79Show/hide
Query:  MLVGNKCDLENIRDVTVEEGTSLAEAEGLFFMETSALDSTNVKRAFEIVIREIYNNVSRKVLNSDTYKAELSVNRVSLVNNGGSKQSEGYFSCCSR
        MLVGNKCDL+NIRDV++EEGTSLAEAEGLFFMETSALDSTNVKRAFEIVIREIYNNVSRKVLNSDTYKAELSVNRVSLVNNGGSKQSE Y SCCSR
Subjt:  MLVGNKCDLENIRDVTVEEGTSLAEAEGLFFMETSALDSTNVKRAFEIVIREIYNNVSRKVLNSDTYKAELSVNRVSLVNNGGSKQSEGYFSCCSR

A0A6J1I7X8 ras-related protein RABA5d-like1.2e-4193.75Show/hide
Query:  MLVGNKCDLENIRDVTVEEGTSLAEAEGLFFMETSALDSTNVKRAFEIVIREIYNNVSRKVLNSDTYKAELSVNRVSLVNNGGSKQSEGYFSCCSR
        MLVGNKCDL+NIRDV++EEGTSLAEAEGLFFMETSALDSTNVKRAFEIVIREIYNNVSRKVLNSDTYKAELSVNRVSLVNNGGSKQSE Y SCC R
Subjt:  MLVGNKCDLENIRDVTVEEGTSLAEAEGLFFMETSALDSTNVKRAFEIVIREIYNNVSRKVLNSDTYKAELSVNRVSLVNNGGSKQSEGYFSCCSR

SwissProt top hitse value%identityAlignment
P19892 Ras-related protein RABA5e9.5e-3379.38Show/hide
Query:  MLVGNKCDLENIRDVTVEEGTSLAEAEGLFFMETSALDSTNVKRAFEIVIREIYNNVSRKVLNSDTYKAELSVNRVSLV--NNGGSKQSEGYFSCCS
        MLVGNKCDLENIR V+VEEG +LAE EGLFF+ETSALDSTNVK AFE+VI +IYNNVSRK LNSDTYK EL+VNRVSLV  +N  SKQS G FSCCS
Subjt:  MLVGNKCDLENIRDVTVEEGTSLAEAEGLFFMETSALDSTNVKRAFEIVIREIYNNVSRKVLNSDTYKAELSVNRVSLV--NNGGSKQSEGYFSCCS

P28187 Ras-related protein RABA5c3.6e-3275Show/hide
Query:  MLVGNKCDLENIRDVTVEEGTSLAEAEGLFFMETSALDSTNVKRAFEIVIREIYNNVSRKVLNSDTYKAELSVNRVSLVNNGGSKQSEGYFSCCSR
        ML+GNKCDLE+IR V+VEEG SLAE+EGLFFMETSALDSTNVK AFE+VIREIY+N+SRK LNSD+YK EL+VNRVSLV N    +    FSCCSR
Subjt:  MLVGNKCDLENIRDVTVEEGTSLAEAEGLFFMETSALDSTNVKRAFEIVIREIYNNVSRKVLNSDTYKAELSVNRVSLVNNGGSKQSEGYFSCCSR

Q9FGK5 Ras-related protein RABA5a9.5e-1750Show/hide
Query:  MLVGNKCDLENIRDVTVEEGTSLAEAEGLFFMETSALDSTNVKRAFEIVIREIYNNVSRKVLNSDTYKAELSVNRVSLVNNGGS----KQSEGYF---SC
        +LVGNK DL+++R+V+  EG +LAEA+GLFFMETSALDS+NV  AFE V++EIYN +SRKV++S     EL+    + ++NG         +G F    C
Subjt:  MLVGNKCDLENIRDVTVEEGTSLAEAEGLFFMETSALDSTNVKRAFEIVIREIYNNVSRKVLNSDTYKAELSVNRVSLVNNGGS----KQSEGYF---SC

Query:  CS
        CS
Subjt:  CS

Q9SIP0 Ras-related protein RABA5d5.2e-3173.2Show/hide
Query:  MLVGNKCDLENIRDVTVEEGTSLAEAEGLFFMETSALDSTNVKRAFEIVIREIYNNVSRKVLNSDTYKAELSV-NRVSLVNNGGSKQSEGY-FSCCS
        MLVGNKCDLE+IR V+VEEG +LAE EGLFFMETSALDSTNVK AFE+VIR+IY N+SRK LNSDTYK ELS+ NRVSLV +     ++G+ FSCCS
Subjt:  MLVGNKCDLENIRDVTVEEGTSLAEAEGLFFMETSALDSTNVKRAFEIVIREIYNNVSRKVLNSDTYKAELSV-NRVSLVNNGGSKQSEGY-FSCCS

Q9SRS5 Ras-related protein RABA5b1.9e-3379.38Show/hide
Query:  MLVGNKCDLENIRDVTVEEGTSLAEAEGLFFMETSALDSTNVKRAFEIVIREIYNNVSRKVLNSDTYKAELSVNRVSLVNN-GGSKQSEGYFSCCSR
        MLVGNKCDLE+IR V+VEEG +LAE EGLFFMETSALD+TNV +AFEIVIREI+NNVSRK+LNSD YKAELSVNRVSLVNN  GS+ S    SCCSR
Subjt:  MLVGNKCDLENIRDVTVEEGTSLAEAEGLFFMETSALDSTNVKRAFEIVIREIYNNVSRKVLNSDTYKAELSVNRVSLVNN-GGSKQSEGYFSCCSR

Arabidopsis top hitse value%identityAlignment
AT1G05810.1 RAB GTPase homolog A5E6.7e-3479.38Show/hide
Query:  MLVGNKCDLENIRDVTVEEGTSLAEAEGLFFMETSALDSTNVKRAFEIVIREIYNNVSRKVLNSDTYKAELSVNRVSLV--NNGGSKQSEGYFSCCS
        MLVGNKCDLENIR V+VEEG +LAE EGLFF+ETSALDSTNVK AFE+VI +IYNNVSRK LNSDTYK EL+VNRVSLV  +N  SKQS G FSCCS
Subjt:  MLVGNKCDLENIRDVTVEEGTSLAEAEGLFFMETSALDSTNVKRAFEIVIREIYNNVSRKVLNSDTYKAELSVNRVSLV--NNGGSKQSEGYFSCCS

AT2G31680.1 RAB GTPase homolog A5D3.7e-3273.2Show/hide
Query:  MLVGNKCDLENIRDVTVEEGTSLAEAEGLFFMETSALDSTNVKRAFEIVIREIYNNVSRKVLNSDTYKAELSV-NRVSLVNNGGSKQSEGY-FSCCS
        MLVGNKCDLE+IR V+VEEG +LAE EGLFFMETSALDSTNVK AFE+VIR+IY N+SRK LNSDTYK ELS+ NRVSLV +     ++G+ FSCCS
Subjt:  MLVGNKCDLENIRDVTVEEGTSLAEAEGLFFMETSALDSTNVKRAFEIVIREIYNNVSRKVLNSDTYKAELSV-NRVSLVNNGGSKQSEGY-FSCCS

AT2G43130.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein2.6e-3375Show/hide
Query:  MLVGNKCDLENIRDVTVEEGTSLAEAEGLFFMETSALDSTNVKRAFEIVIREIYNNVSRKVLNSDTYKAELSVNRVSLVNNGGSKQSEGYFSCCSR
        ML+GNKCDLE+IR V+VEEG SLAE+EGLFFMETSALDSTNVK AFE+VIREIY+N+SRK LNSD+YK EL+VNRVSLV N    +    FSCCSR
Subjt:  MLVGNKCDLENIRDVTVEEGTSLAEAEGLFFMETSALDSTNVKRAFEIVIREIYNNVSRKVLNSDTYKAELSVNRVSLVNNGGSKQSEGYFSCCSR

AT3G07410.1 RAB GTPase homolog A5B1.4e-3479.38Show/hide
Query:  MLVGNKCDLENIRDVTVEEGTSLAEAEGLFFMETSALDSTNVKRAFEIVIREIYNNVSRKVLNSDTYKAELSVNRVSLVNN-GGSKQSEGYFSCCSR
        MLVGNKCDLE+IR V+VEEG +LAE EGLFFMETSALD+TNV +AFEIVIREI+NNVSRK+LNSD YKAELSVNRVSLVNN  GS+ S    SCCSR
Subjt:  MLVGNKCDLENIRDVTVEEGTSLAEAEGLFFMETSALDSTNVKRAFEIVIREIYNNVSRKVLNSDTYKAELSVNRVSLVNN-GGSKQSEGYFSCCSR

AT5G47520.1 RAB GTPase homolog A5A6.8e-1850Show/hide
Query:  MLVGNKCDLENIRDVTVEEGTSLAEAEGLFFMETSALDSTNVKRAFEIVIREIYNNVSRKVLNSDTYKAELSVNRVSLVNNGGS----KQSEGYF---SC
        +LVGNK DL+++R+V+  EG +LAEA+GLFFMETSALDS+NV  AFE V++EIYN +SRKV++S     EL+    + ++NG         +G F    C
Subjt:  MLVGNKCDLENIRDVTVEEGTSLAEAEGLFFMETSALDSTNVKRAFEIVIREIYNNVSRKVLNSDTYKAELSVNRVSLVNNGGS----KQSEGYF---SC

Query:  CS
        CS
Subjt:  CS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGCTAGTCGGGAACAAATGCGATTTAGAGAACATTAGGGACGTGACAGTTGAGGAAGGCACGAGTCTTGCAGAAGCCGAAGGGTTGTTCTTCATGGAGACATCTGC
TCTAGACTCAACAAATGTTAAAAGGGCTTTCGAAATCGTGATCCGAGAAATATACAACAATGTCAGCAGGAAGGTCCTGAATTCAGATACCTACAAAGCAGAATTATCTG
TCAACCGAGTGAGCCTCGTCAACAACGGTGGATCGAAGCAATCAGAAGGCTATTTTTCTTGCTGTTCCAGGTGA
mRNA sequenceShow/hide mRNA sequence
ATGATGCTAGTCGGGAACAAATGCGATTTAGAGAACATTAGGGACGTGACAGTTGAGGAAGGCACGAGTCTTGCAGAAGCCGAAGGGTTGTTCTTCATGGAGACATCTGC
TCTAGACTCAACAAATGTTAAAAGGGCTTTCGAAATCGTGATCCGAGAAATATACAACAATGTCAGCAGGAAGGTCCTGAATTCAGATACCTACAAAGCAGAATTATCTG
TCAACCGAGTGAGCCTCGTCAACAACGGTGGATCGAAGCAATCAGAAGGCTATTTTTCTTGCTGTTCCAGGTGA
Protein sequenceShow/hide protein sequence
MMLVGNKCDLENIRDVTVEEGTSLAEAEGLFFMETSALDSTNVKRAFEIVIREIYNNVSRKVLNSDTYKAELSVNRVSLVNNGGSKQSEGYFSCCSR