CuGenDBv2

Gene ID	HG10001856
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	DNA-directed RNA polymerase III subunit rpc4-like
Genome location	Chr11:1123635..1131443
RNA-Seq Expression	HG10001856
Synteny	HG10001856
Gene Ontology terms	GO:0006383 - transcription by RNA polymerase III (biological process) GO:0006412 - translation (biological process) GO:0005666 - RNA polymerase III complex (cellular component) GO:0005829 - cytosol (cellular component) GO:0005840 - ribosome (cellular component) GO:0003677 - DNA binding (molecular function) GO:0003729 - mRNA binding (molecular function) GO:0003735 - structural constituent of ribosome (molecular function) GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
InterPro domains	IPR007811 - DNA-directed RNA polymerase III subunit RPC4

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0044650.1 DNA-directed RNA polymerase III subunit rpc4-like [Cucumis melo var. makuwa]

3.2e-138

84.39

Show/hide

Query:  EDEDGDGYVAQTRYLLRRAKENLGKRGNKVEKKASVQVAFGPGAASTSSSIRTYGVPKVENSSRKKDIEPEVDEDDEFILPLSMDVEEDGKIFDKKVEDG
        EDEDG+GYVAQTRYLLRRA ENLGKR NKVE+K+SVQVAFGPGA STSSSIRTYGVPKVEN SRK DIEPEVDED+EF+LP++MDV EDGK FDKK +DG
Subjt:  EDEDGDGYVAQTRYLLRRAKENLGKRGNKVEKKASVQVAFGPGAASTSSSIRTYGVPKVENSSRKKDIEPEVDEDDEFILPLSMDVEEDGKIFDKKVEDG

Query:  ------SAIVTKTKKDYKEPWDYHNSYYPTTLPIRMPYSGDPELLDEAEFRQDATDREYYENSVIPALDLGLLDENTENTKYFFQLPARLPLPKQSSTTT
              SA+VTKTK+DYKEPWDY NSYYPTTLP+RMPYSGDPE LDEAEF QDA +REY ENSVIPALDLGL DENTENTKYFFQLPARLPLPKQSST T
Subjt:  ------SAIVTKTKKDYKEPWDYHNSYYPTTLPIRMPYSGDPELLDEAEFRQDATDREYYENSVIPALDLGLLDENTENTKYFFQLPARLPLPKQSSTTT

Query:  GKEKVGNLRSSNSMGSSELGDWKKLSAGCMGKLLIYKSGAIKLRLGDTLYDVSSGSNCSFLQHVVAINTEEGQCCDLGDISKRAIVTPDINSLLNSVTDL
        GKEKVGN RSSNS  SS+L D KKLSAGCMGKLLIYKSGAIKLRLGD LYDVSSGS+CSFLQHVVAINTE+GQCCDLGDI KR +VTPDI+SLLNSVT+L
Subjt:  GKEKVGNLRSSNSMGSSELGDWKKLSAGCMGKLLIYKSGAIKLRLGDTLYDVSSGSNCSFLQHVVAINTEEGQCCDLGDISKRAIVTPDINSLLNSVTDL

Query:  R
        R
Subjt:  R

TYK16939.1 DNA-directed RNA polymerase III subunit rpc4-like [Cucumis melo var. makuwa]

9.2e-130

84.21

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Query:  EDEDGDGYVAQTRYLLRRAKENLGKRGNKVEKKASVQVAFGPGAASTSSSIRTYGVPKVENSSRKKDIEPEVDEDDEFILPLSMDVEEDGKIFDKKVEDG
        EDEDG+GYVAQTRYLLRRA ENLGKR NKVEKK+SVQVAFGPGA STSSSIRTYGVPKVEN SRK DIEPEVDED+EF+LP++MDV EDGK FDKK +DG
Subjt:  EDEDGDGYVAQTRYLLRRAKENLGKRGNKVEKKASVQVAFGPGAASTSSSIRTYGVPKVENSSRKKDIEPEVDEDDEFILPLSMDVEEDGKIFDKKVEDG

Query:  ------SAIVTKTKKDYKEPWDYHNSYYPTTLPIRMPYSGDPELLDEAEFRQDATDREYYENSVIPALDLGLLDENTENTKYFFQLPARLPLPKQSSTTT
              SA+VTKTK+DYKEPWDY NSYYPTTLP+RMPYSGD E LDEAEF QDA +REY ENSVIPALDLGL DENTENTKYFFQLPARLPLPKQSST T
Subjt:  ------SAIVTKTKKDYKEPWDYHNSYYPTTLPIRMPYSGDPELLDEAEFRQDATDREYYENSVIPALDLGLLDENTENTKYFFQLPARLPLPKQSSTTT

Query:  GKEKVGNLRSSNSMGSSELGDWKKLSAGCMGKLLIYKSGAIKLRLGDTLYDVSSGSNCSFLQHVVAINTEEGQCCDLGDISKRAI
        GKEKVGN RSSNS  SS+L D KKLSAGCMGKLLIYKSGAIKLRLGD LYDVSSGS+CSFLQHVVAINTE+GQCCDLGDI KR +
Subjt:  GKEKVGNLRSSNSMGSSELGDWKKLSAGCMGKLLIYKSGAIKLRLGDTLYDVSSGSNCSFLQHVVAINTEEGQCCDLGDISKRAI

XP_004146914.1 DNA-directed RNA polymerase III subunit rpc4 [Cucumis sativus]

3.5e-137

84.05

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Query:  EDEDGDGYVAQTRYLLRRAKENLGKRGNKVEKKASVQVAFGPGAASTSSSIRTYGVPKVENSSRKKDIEPEVDEDDEFILPLSMDVEEDGKIFDKKVEDG
        EDEDG+GYVAQTRYLLRRA ENLGKR NKVEKK+SVQVAFGPGA STSSSIRTYGVPKVEN SRK DIEPEVDED+EF+LP++ DV EDGK FDKK +DG
Subjt:  EDEDGDGYVAQTRYLLRRAKENLGKRGNKVEKKASVQVAFGPGAASTSSSIRTYGVPKVENSSRKKDIEPEVDEDDEFILPLSMDVEEDGKIFDKKVEDG

Query:  ------SAIVTKTKKDYKEPWDYHNSYYPTTLPIRMPYSGDPELLDEAEFRQDATDREYYENSVIPALDLGLLDENTENTKYFFQLPARLPLPKQSSTTT
              SA+ TKTK+DYKEPWDY NSYYPTTLP+RMPYSGDPE LDEAEF QD  +REY ENSVIPALDLGLLDENTE+TKYFFQLPARLPLPKQSST T
Subjt:  ------SAIVTKTKKDYKEPWDYHNSYYPTTLPIRMPYSGDPELLDEAEFRQDATDREYYENSVIPALDLGLLDENTENTKYFFQLPARLPLPKQSSTTT

Query:  GKEKVGNLRSSNSMGSSELGDWKKLSAGCMGKLLIYKSGAIKLRLGDTLYDVSSGSNCSFLQHVVAINTEEGQCCDLGDISKRAIVTPDINSLLNSVTDL
        GKEKVGN RSSNS  SS+L D KKLSAGCMGKLLIYKSGAIKLRLGD LYDVSSGSNCSFLQHVVAINTEEGQCCDLGDI  R +VTPDI+SLLNSVT+L
Subjt:  GKEKVGNLRSSNSMGSSELGDWKKLSAGCMGKLLIYKSGAIKLRLGDTLYDVSSGSNCSFLQHVVAINTEEGQCCDLGDISKRAIVTPDINSLLNSVTDL

Query:  R
        R
Subjt:  R

XP_008453902.1 PREDICTED: DNA-directed RNA polymerase III subunit rpc4-like [Cucumis melo]

1.6e-137

84.39

Show/hide

Query:  EDEDGDGYVAQTRYLLRRAKENLGKRGNKVEKKASVQVAFGPGAASTSSSIRTYGVPKVENSSRKKDIEPEVDEDDEFILPLSMDVEEDGKIFDKKVEDG
        EDEDG+GYVAQTRYLLRRA ENLGKR NKVEKK+SVQVAFGPGA STSSSIRTYGVPKVEN SRK DIEPEVDED+EF+LP++MDV EDGK FDKK +DG
Subjt:  EDEDGDGYVAQTRYLLRRAKENLGKRGNKVEKKASVQVAFGPGAASTSSSIRTYGVPKVENSSRKKDIEPEVDEDDEFILPLSMDVEEDGKIFDKKVEDG

Query:  ------SAIVTKTKKDYKEPWDYHNSYYPTTLPIRMPYSGDPELLDEAEFRQDATDREYYENSVIPALDLGLLDENTENTKYFFQLPARLPLPKQSSTTT
              SA+VTKTK+DYKEPWDY NSYYPTTLP+RMPYSGD E LDEAEF QDA +REY ENSVIPALDLGL DENTENTKYFFQLPARLPLPKQSST T
Subjt:  ------SAIVTKTKKDYKEPWDYHNSYYPTTLPIRMPYSGDPELLDEAEFRQDATDREYYENSVIPALDLGLLDENTENTKYFFQLPARLPLPKQSSTTT

Query:  GKEKVGNLRSSNSMGSSELGDWKKLSAGCMGKLLIYKSGAIKLRLGDTLYDVSSGSNCSFLQHVVAINTEEGQCCDLGDISKRAIVTPDINSLLNSVTDL
        GKEKVGN RSSNS  SS+L D KKLSAGCMGKLLIYKSGAIKLRLGD LYDVSSGS+CSFLQHVVAINTE+GQCCDLGDI KR +VTPDI+SLLNSVT+L
Subjt:  GKEKVGNLRSSNSMGSSELGDWKKLSAGCMGKLLIYKSGAIKLRLGDTLYDVSSGSNCSFLQHVVAINTEEGQCCDLGDISKRAIVTPDINSLLNSVTDL

Query:  R
        R
Subjt:  R

XP_038879339.1 DNA-directed RNA polymerase III subunit rpc4-like [Benincasa hispida]

2.9e-144

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Query:  EDEDGDGYVAQTRYLLRRAKENLGKRGNKVEKKASVQVAFGPGAASTSSSIRTYGVPKVENSSRKKDIEPEVDEDDEFILPLSMDVEEDGKIFDKKVEDG
        EDEDGDGYVAQTRYLLRRA ENLGKRGNKV++K+SVQVAFGPGAASTSSSIRTYGVPKVENSSRK DIEP+VDED+EFILPL MDVEE+GKIFDKK +DG
Subjt:  EDEDGDGYVAQTRYLLRRAKENLGKRGNKVEKKASVQVAFGPGAASTSSSIRTYGVPKVENSSRKKDIEPEVDEDDEFILPLSMDVEEDGKIFDKKVEDG

Query:  ------SAIVTKTKKDYKEPWDYHNSYYPTTLPIRMPYSGDPELLDEAEFRQDATDREYYENSVIPALDLGLLDENTENTKYFFQLPARLPLPKQSSTTT
              SAIVTKTKKDYKEPWDYHNS YPTTLPIRMPYSGDPE LDEAEF QDATDREY E+SVIPALDLGLLDE TENTKYFFQLPARLPLPKQSST T
Subjt:  ------SAIVTKTKKDYKEPWDYHNSYYPTTLPIRMPYSGDPELLDEAEFRQDATDREYYENSVIPALDLGLLDENTENTKYFFQLPARLPLPKQSSTTT

Query:  GKEKVGNLRSSNSMGSSELGDWKKLSAGCMGKLLIYKSGAIKLRLGDTLYDVSSGSNCSFLQHVVAINTEEGQCCDLGDISKRAIVTPDINSLLNSVTDL
        GKEKVGNLRSS SMGSSELGD KKLSAGCMGKLLIYKSGAIKLRLGDTLYDVSSGS+CSFLQHVVAINT+EGQCCDLGDI KR IVTPDI+SLLNS+T+L
Subjt:  GKEKVGNLRSSNSMGSSELGDWKKLSAGCMGKLLIYKSGAIKLRLGDTLYDVSSGSNCSFLQHVVAINTEEGQCCDLGDISKRAIVTPDINSLLNSVTDL

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KZ61 Uncharacterized protein

1.7e-137

84.05

Show/hide

Query:  EDEDGDGYVAQTRYLLRRAKENLGKRGNKVEKKASVQVAFGPGAASTSSSIRTYGVPKVENSSRKKDIEPEVDEDDEFILPLSMDVEEDGKIFDKKVEDG
        EDEDG+GYVAQTRYLLRRA ENLGKR NKVEKK+SVQVAFGPGA STSSSIRTYGVPKVEN SRK DIEPEVDED+EF+LP++ DV EDGK FDKK +DG
Subjt:  EDEDGDGYVAQTRYLLRRAKENLGKRGNKVEKKASVQVAFGPGAASTSSSIRTYGVPKVENSSRKKDIEPEVDEDDEFILPLSMDVEEDGKIFDKKVEDG

Query:  ------SAIVTKTKKDYKEPWDYHNSYYPTTLPIRMPYSGDPELLDEAEFRQDATDREYYENSVIPALDLGLLDENTENTKYFFQLPARLPLPKQSSTTT
              SA+ TKTK+DYKEPWDY NSYYPTTLP+RMPYSGDPE LDEAEF QD  +REY ENSVIPALDLGLLDENTE+TKYFFQLPARLPLPKQSST T
Subjt:  ------SAIVTKTKKDYKEPWDYHNSYYPTTLPIRMPYSGDPELLDEAEFRQDATDREYYENSVIPALDLGLLDENTENTKYFFQLPARLPLPKQSSTTT

Query:  GKEKVGNLRSSNSMGSSELGDWKKLSAGCMGKLLIYKSGAIKLRLGDTLYDVSSGSNCSFLQHVVAINTEEGQCCDLGDISKRAIVTPDINSLLNSVTDL
        GKEKVGN RSSNS  SS+L D KKLSAGCMGKLLIYKSGAIKLRLGD LYDVSSGSNCSFLQHVVAINTEEGQCCDLGDI  R +VTPDI+SLLNSVT+L
Subjt:  GKEKVGNLRSSNSMGSSELGDWKKLSAGCMGKLLIYKSGAIKLRLGDTLYDVSSGSNCSFLQHVVAINTEEGQCCDLGDISKRAIVTPDINSLLNSVTDL

Query:  R
        R
Subjt:  R

A0A1S3BYJ9 DNA-directed RNA polymerase III subunit rpc4-like

7.6e-138

84.39

Show/hide

Query:  EDEDGDGYVAQTRYLLRRAKENLGKRGNKVEKKASVQVAFGPGAASTSSSIRTYGVPKVENSSRKKDIEPEVDEDDEFILPLSMDVEEDGKIFDKKVEDG
        EDEDG+GYVAQTRYLLRRA ENLGKR NKVEKK+SVQVAFGPGA STSSSIRTYGVPKVEN SRK DIEPEVDED+EF+LP++MDV EDGK FDKK +DG
Subjt:  EDEDGDGYVAQTRYLLRRAKENLGKRGNKVEKKASVQVAFGPGAASTSSSIRTYGVPKVENSSRKKDIEPEVDEDDEFILPLSMDVEEDGKIFDKKVEDG

Query:  ------SAIVTKTKKDYKEPWDYHNSYYPTTLPIRMPYSGDPELLDEAEFRQDATDREYYENSVIPALDLGLLDENTENTKYFFQLPARLPLPKQSSTTT
              SA+VTKTK+DYKEPWDY NSYYPTTLP+RMPYSGD E LDEAEF QDA +REY ENSVIPALDLGL DENTENTKYFFQLPARLPLPKQSST T
Subjt:  ------SAIVTKTKKDYKEPWDYHNSYYPTTLPIRMPYSGDPELLDEAEFRQDATDREYYENSVIPALDLGLLDENTENTKYFFQLPARLPLPKQSSTTT

Query:  GKEKVGNLRSSNSMGSSELGDWKKLSAGCMGKLLIYKSGAIKLRLGDTLYDVSSGSNCSFLQHVVAINTEEGQCCDLGDISKRAIVTPDINSLLNSVTDL
        GKEKVGN RSSNS  SS+L D KKLSAGCMGKLLIYKSGAIKLRLGD LYDVSSGS+CSFLQHVVAINTE+GQCCDLGDI KR +VTPDI+SLLNSVT+L
Subjt:  GKEKVGNLRSSNSMGSSELGDWKKLSAGCMGKLLIYKSGAIKLRLGDTLYDVSSGSNCSFLQHVVAINTEEGQCCDLGDISKRAIVTPDINSLLNSVTDL

Query:  R
        R
Subjt:  R

A0A5A7TN83 DNA-directed RNA polymerase III subunit rpc4-like

1.5e-138

84.39

Show/hide

Query:  EDEDGDGYVAQTRYLLRRAKENLGKRGNKVEKKASVQVAFGPGAASTSSSIRTYGVPKVENSSRKKDIEPEVDEDDEFILPLSMDVEEDGKIFDKKVEDG
        EDEDG+GYVAQTRYLLRRA ENLGKR NKVE+K+SVQVAFGPGA STSSSIRTYGVPKVEN SRK DIEPEVDED+EF+LP++MDV EDGK FDKK +DG
Subjt:  EDEDGDGYVAQTRYLLRRAKENLGKRGNKVEKKASVQVAFGPGAASTSSSIRTYGVPKVENSSRKKDIEPEVDEDDEFILPLSMDVEEDGKIFDKKVEDG

Query:  ------SAIVTKTKKDYKEPWDYHNSYYPTTLPIRMPYSGDPELLDEAEFRQDATDREYYENSVIPALDLGLLDENTENTKYFFQLPARLPLPKQSSTTT
              SA+VTKTK+DYKEPWDY NSYYPTTLP+RMPYSGDPE LDEAEF QDA +REY ENSVIPALDLGL DENTENTKYFFQLPARLPLPKQSST T
Subjt:  ------SAIVTKTKKDYKEPWDYHNSYYPTTLPIRMPYSGDPELLDEAEFRQDATDREYYENSVIPALDLGLLDENTENTKYFFQLPARLPLPKQSSTTT

Query:  GKEKVGNLRSSNSMGSSELGDWKKLSAGCMGKLLIYKSGAIKLRLGDTLYDVSSGSNCSFLQHVVAINTEEGQCCDLGDISKRAIVTPDINSLLNSVTDL
        GKEKVGN RSSNS  SS+L D KKLSAGCMGKLLIYKSGAIKLRLGD LYDVSSGS+CSFLQHVVAINTE+GQCCDLGDI KR +VTPDI+SLLNSVT+L
Subjt:  GKEKVGNLRSSNSMGSSELGDWKKLSAGCMGKLLIYKSGAIKLRLGDTLYDVSSGSNCSFLQHVVAINTEEGQCCDLGDISKRAIVTPDINSLLNSVTDL

Query:  R
        R
Subjt:  R

A0A5D3D2X2 Ribosomal protein L15

4.5e-130

84.21

Show/hide

Query:  EDEDGDGYVAQTRYLLRRAKENLGKRGNKVEKKASVQVAFGPGAASTSSSIRTYGVPKVENSSRKKDIEPEVDEDDEFILPLSMDVEEDGKIFDKKVEDG
        EDEDG+GYVAQTRYLLRRA ENLGKR NKVEKK+SVQVAFGPGA STSSSIRTYGVPKVEN SRK DIEPEVDED+EF+LP++MDV EDGK FDKK +DG
Subjt:  EDEDGDGYVAQTRYLLRRAKENLGKRGNKVEKKASVQVAFGPGAASTSSSIRTYGVPKVENSSRKKDIEPEVDEDDEFILPLSMDVEEDGKIFDKKVEDG

Query:  ------SAIVTKTKKDYKEPWDYHNSYYPTTLPIRMPYSGDPELLDEAEFRQDATDREYYENSVIPALDLGLLDENTENTKYFFQLPARLPLPKQSSTTT
              SA+VTKTK+DYKEPWDY NSYYPTTLP+RMPYSGD E LDEAEF QDA +REY ENSVIPALDLGL DENTENTKYFFQLPARLPLPKQSST T
Subjt:  ------SAIVTKTKKDYKEPWDYHNSYYPTTLPIRMPYSGDPELLDEAEFRQDATDREYYENSVIPALDLGLLDENTENTKYFFQLPARLPLPKQSSTTT

Query:  GKEKVGNLRSSNSMGSSELGDWKKLSAGCMGKLLIYKSGAIKLRLGDTLYDVSSGSNCSFLQHVVAINTEEGQCCDLGDISKRAI
        GKEKVGN RSSNS  SS+L D KKLSAGCMGKLLIYKSGAIKLRLGD LYDVSSGS+CSFLQHVVAINTE+GQCCDLGDI KR +
Subjt:  GKEKVGNLRSSNSMGSSELGDWKKLSAGCMGKLLIYKSGAIKLRLGDTLYDVSSGSNCSFLQHVVAINTEEGQCCDLGDISKRAI

A0A6J1E8A8 DNA-directed RNA polymerase III subunit rpc4-like

5.8e-122

78.72

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Query:  EDEDGDGYVAQTRYLLRRAKENLGKRGNKVEKKASVQVAFGPGAAST--SSSIRTYGVPKVENSSRKKDIEPEVDEDDEFILPLSMDVEEDGKIFDKKVE
        EDED  G VAQTRYLLRRA ENLGKRGNKVEKK+SVQVAFGPGAAS   SSSIRTYGVPK+ NSSRKKDIEPE  ED+E ILP  MD EE GK  ++K E
Subjt:  EDEDGDGYVAQTRYLLRRAKENLGKRGNKVEKKASVQVAFGPGAAST--SSSIRTYGVPKVENSSRKKDIEPEVDEDDEFILPLSMDVEEDGKIFDKKVE

Query:  DGSAIVTKTKKDYKEPWDYHNSYYPTTLPIRMPYSGDPELLDEAEFRQDATDREYYENSVIPALDLGLLDENTENTKYFFQLPARLPLPKQSSTTTGKEK
        D     TK  KDYKEPWDYHNSYYPTTLP+RMPYSGDPE+LDEAEF QD  DREY ENS IPALDLGLLDEN+ENT+YFFQLPA LP PK+SST+TGKEK
Subjt:  DGSAIVTKTKKDYKEPWDYHNSYYPTTLPIRMPYSGDPELLDEAEFRQDATDREYYENSVIPALDLGLLDENTENTKYFFQLPARLPLPKQSSTTTGKEK

Query:  VGNLRSSNSMGSSELGDWKKLSAGCMGKLLIYKSGAIKLRLGDTLYDVSSGSNCSFLQHVVAINTEEGQCCDLGDISKRAIVTPDINSLLNSVTDL
        VGNLRSS S  SSELGD + L  G MGKLLIYKSGA+KLRLGDTLYDVSSG +CSFLQHVVAINT++GQCCDLG+I KR +VTPDI SLLNS+TDL
Subjt:  VGNLRSSNSMGSSELGDWKKLSAGCMGKLLIYKSGAIKLRLGDTLYDVSSGSNCSFLQHVVAINTEEGQCCDLGDISKRAIVTPDINSLLNSVTDL

SwissProt top hits

e value

%identity

Alignment

O74857 DNA-directed RNA polymerase III subunit rpc4

4.3e-05

36.51

Show/hide

Query:  AGCMGKLLIYKSGAIKLRLGDTLYDVSSGSNCSFLQHVVAINTEEGQCCDLGDISKRAIVTPD
        AG +G L +++SG   L +G   + V SGS+C FLQ +  ++ +  +  +LG   +R IV+PD
Subjt:  AGCMGKLLIYKSGAIKLRLGDTLYDVSSGSNCSFLQHVVAINTEEGQCCDLGDISKRAIVTPD

P05423 DNA-directed RNA polymerase III subunit RPC4

2.1e-07

40.54

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Query:  LSAGCMGKLLIYKSGAIKLRLGDTLYDVSSGSNCSFLQHVVAI---NTEEGQCCDLGDISKRAIVTPDINSLLN
        L+ G +GKLLI KSG ++L LG    DV+ G+ CSFLQ +V++   ++  G+   LG +  + + +PD  SLL+
Subjt:  LSAGCMGKLLIYKSGAIKLRLGDTLYDVSSGSNCSFLQHVVAI---NTEEGQCCDLGDISKRAIVTPDINSLLN

P25441 DNA-directed RNA polymerase III subunit RPC4

9.6e-05

28.45

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Query:  FQLPARLPLPKQSSTTTGKEKVGNLRSSNSMGSSEL--GDWK-----KLSAGCMGKLLIYKSGAIKLRLGDTLYDVSSGSNCSFLQHVVAIN-TEEGQCC
        FQLP RLP  ++ +    KE +    S  S     +   D K     +  AG +G + ++KSG + +++G+ + D+  G+  +FLQ V+A++  ++    
Subjt:  FQLPARLPLPKQSSTTTGKEKVGNLRSSNSMGSSEL--GDWK-----KLSAGCMGKLLIYKSGAIKLRLGDTLYDVSSGSNCSFLQHVVAIN-TEEGQCC

Query:  D-LGDISKRAIVTPDI
        + LG +  + +VTP I
Subjt:  D-LGDISKRAIVTPDI

Q5E9Z7 DNA-directed RNA polymerase III subunit RPC4

6.0e-07

40.54

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Query:  LSAGCMGKLLIYKSGAIKLRLGDTLYDVSSGSNCSFLQHVVAI---NTEEGQCCDLGDISKRAIVTPDINSLLN
        L+ G +GKLLI KSG ++L LG    DV+ G+ CSFLQ +V++   ++  G    LG I  + + +P+  SLL+
Subjt:  LSAGCMGKLLIYKSGAIKLRLGDTLYDVSSGSNCSFLQHVVAI---NTEEGQCCDLGDISKRAIVTPDINSLLN

Q91WD1 DNA-directed RNA polymerase III subunit RPC4

1.2e-07

40.54

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Query:  LSAGCMGKLLIYKSGAIKLRLGDTLYDVSSGSNCSFLQHVVAI---NTEEGQCCDLGDISKRAIVTPDINSLLN
        L+ G +GKLLI KSG ++L LG    DV+ G+ CSFLQ +V++   ++  G+   LG +  + + +PD  SLL+
Subjt:  LSAGCMGKLLIYKSGAIKLRLGDTLYDVSSGSNCSFLQHVVAI---NTEEGQCCDLGDISKRAIVTPDINSLLN

Arabidopsis top hits

e value

%identity

Alignment

AT4G25180.1 RNA polymerase III RPC4

1.8e-43

38.59

Show/hide

Query:  EDEDGDGYVAQTRYLLRRAKENLGKRGNKVEKKASVQVAFGPGAASTSSSIRTYGVPKVENSSRKKDIEPEVDEDDEFILPLSMDV---EEDGKIFDKKV
        E E+ +  +  +R   RR    +G+R     K +S +VAF P  +    +IR++GVPK E+     D+ P        ILP    V   +EDG       
Subjt:  EDEDGDGYVAQTRYLLRRAKENLGKRGNKVEKKASVQVAFGPGAASTSSSIRTYGVPKVENSSRKKDIEPEVDEDDEFILPLSMDV---EEDGKIFDKKV

Query:  EDGSAIVTKTKKDYKEPWDYHNSYYPTTLPIRMPYSGDPELLDEAEFRQDATDREYYENSVIPALDLGLLD-ENTENTKYFFQLPARLPLPKQSSTTTGK
        E+    VT+T  DY EPWDY NSYYPT LP+R P SGD ELLD+ EF + A +R+Y EN++  A +LGL   ++++   + F++P  LP+ KQ++  T K
Subjt:  EDGSAIVTKTKKDYKEPWDYHNSYYPTTLPIRMPYSGDPELLDEAEFRQDATDREYYENSVIPALDLGLLD-ENTENTKYFFQLPARLPLPKQSSTTTGK

Query:  EKVGNLRSSNSMGSSELGDWKKLSAGCMGKLLIYKSGAIKLRLGDTLYDVSSGSNCSFLQHVVAINTEEGQCCDLGDISKRAIVTPDINSLLNSVTDL
              RS     S     ++ L  G MGK+L+YKSGA+KL++GD L+DVS G        VVAI+ +   C  +G  +K   VTPD+ SLLN  +D+
Subjt:  EKVGNLRSSNSMGSSELGDWKKLSAGCMGKLLIYKSGAIKLRLGDTLYDVSSGSNCSFLQHVVAINTEEGQCCDLGDISKRAIVTPDINSLLNSVTDL

AT5G09380.1 RNA polymerase III RPC4

2.6e-37

37.64

Show/hide

Query:  KRGNKVEKKASVQVAFGPGAASTSSSIRTYGVPKVENSSRKKDIEPEVDEDDEFILPLSMDVEEDGKIFDKKVEDGSAIVTKTKK-DYKEPWDYHNSYYP
        KR  K E K  V V     +A  S  +R       E S RK   + +V       L   ++     K  ++   +G+   T T++ +YKEPWDY+ SYYP
Subjt:  KRGNKVEKKASVQVAFGPGAASTSSSIRTYGVPKVENSSRKKDIEPEVDEDDEFILPLSMDVEEDGKIFDKKVEDGSAIVTKTKK-DYKEPWDYHNSYYP

Query:  TTLPIRMPYSGDPELLDEAEFRQDATDREYYENSVIPALDLGLLDENTENTKYFFQLPARLPLPKQSSTTTGKEKVGNLRSSNSMGSSELGDWKKLSAGC
         TLP+R PY+GDPE+LD  EF Q      ++E+S+  A +LGL++++ E   +F +LP+   +P  S+ T   E   N++      + +L   K L  G 
Subjt:  TTLPIRMPYSGDPELLDEAEFRQDATDREYYENSVIPALDLGLLDENTENTKYFFQLPARLPLPKQSSTTTGKEKVGNLRSSNSMGSSELGDWKKLSAGC

Query:  MGKLLIYKSGAIKLRLGDTLYDVSSGSNCSFLQHVVAINTEEGQCCDLGDISKRAIVTPDINSLLNSVTDL
        MGKLL+YKSGA+K++LG+ LYDVS G    F Q V+ +NTE+  CC +GD+ K A++TPDI+S+L  + ++
Subjt:  MGKLLIYKSGAIKLRLGDTLYDVSSGSNCSFLQHVVAINTEEGQCCDLGDISKRAIVTPDINSLLNSVTDL

Sequences

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CDS sequence

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ATGATAAAAGTGACACTGGGTGGTTCCTGCTGTCTGCCACGGAGGTTGTGGATTCTTGCTGATGAAGAACAACTTGATTTACAATGTGAAGACGAAGATGGTGATGGTTA
TGTTGCTCAAACTCGGTACCTCTTACGCCGTGCTAAGGAGAATCTCGGAAAACGAGGGAACAAGGTCGAAAAAAAAGCTTCAGTGCAAGTTGCATTCGGTCCCGGTGCAG
CATCAACATCATCTTCTATTAGAACATATGGAGTTCCCAAAGTAGAAAACAGTAGCAGAAAAAAAGACATTGAGCCTGAAGTTGATGAAGATGATGAGTTTATCTTGCCT
CTGTCTATGGATGTTGAAGAAGATGGCAAAATTTTCGATAAAAAGGTTGAAGATGGTTCGGCTATTGTAACCAAGACCAAGAAGGATTACAAAGAACCTTGGGATTACCA
TAATTCTTACTATCCTACTACACTTCCTATACGGATGCCTTACTCTGGAGACCCTGAACTACTTGATGAAGCTGAGTTCAGGCAGGATGCAACAGATAGAGAGTATTATG
AGAACTCTGTAATACCTGCCTTGGATCTTGGATTGCTGGATGAAAATACAGAGAATACTAAGTACTTTTTTCAGCTTCCTGCACGTCTTCCTTTACCCAAACAATCATCT
ACTACAACGGGAAAGGAAAAAGTAGGAAATTTGAGATCTTCAAACAGCATGGGCTCATCCGAGCTTGGCGATTGGAAGAAGCTGTCTGCTGGATGTATGGGGAAACTATT
AATATACAAGAGTGGAGCTATTAAGTTGAGGCTGGGAGATACTCTTTACGATGTTTCTTCTGGTTCAAACTGCAGTTTTCTTCAACATGTTGTGGCAATCAATACTGAAG
AGGGACAGTGTTGTGATCTCGGAGACATCAGCAAACGAGCCATTGTAACACCGGATATTAATTCTCTCTTGAATTCAGTGACTGACTTGAGATGA

mRNA sequence

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Protein sequence

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MIKVTLGGSCCLPRRLWILADEEQLDLQCEDEDGDGYVAQTRYLLRRAKENLGKRGNKVEKKASVQVAFGPGAASTSSSIRTYGVPKVENSSRKKDIEPEVDEDDEFILP
LSMDVEEDGKIFDKKVEDGSAIVTKTKKDYKEPWDYHNSYYPTTLPIRMPYSGDPELLDEAEFRQDATDREYYENSVIPALDLGLLDENTENTKYFFQLPARLPLPKQSS
TTTGKEKVGNLRSSNSMGSSELGDWKKLSAGCMGKLLIYKSGAIKLRLGDTLYDVSSGSNCSFLQHVVAINTEEGQCCDLGDISKRAIVTPDINSLLNSVTDLR

HG10001856 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome