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HG10001908 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10001908
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionTetratricopeptide-like helical
Genome locationChr11:1586574..1586882
RNA-Seq ExpressionHG10001908
SyntenyHG10001908
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8637184.1 hypothetical protein CSA_023573, partial [Cucumis sativus]6.5e-1357.95Show/hide
Query:  ALAMAGIDSNEWAMDTEEWETNTHQMDND--IPPHLLADEDEDEENIITSPASNYTFPVTGKMTDWWCFLLSGDR--CAIFRKIMEKR
        ALAMAGIDSNEWAMD EEW+TNTHQM+ND  IPPHLLA  DEDEENI           ++G   D    +    R   AI RK+MEKR
Subjt:  ALAMAGIDSNEWAMDTEEWETNTHQMDND--IPPHLLADEDEDEENIITSPASNYTFPVTGKMTDWWCFLLSGDR--CAIFRKIMEKR

KAE8649147.1 hypothetical protein Csa_014525, partial [Cucumis sativus]2.9e-1385.71Show/hide
Query:  MTVSLEALAMAGIDSNEWAMDTEEWETNTHQMDND--IPPHLLADEDED
        M VSLEALAMAGIDSNEWAMD EEW+TNTHQM+ND  IPPHLLADEDE+
Subjt:  MTVSLEALAMAGIDSNEWAMDTEEWETNTHQMDND--IPPHLLADEDED

KAG6577295.1 hypothetical protein SDJN03_24869, partial [Cucurbita argyrosperma subsp. sororia]4.8e-1670.77Show/hide
Query:  MTVSLEALAMAGIDSNEWAMDTEEWETNTHQMDNDIPPHLLADEDEDEENIITSPASNYTFPVTG
        M+VSLEALAMAGI SNEWAMD EEWE N  +++ND+PPHLLADED+D++N +TS  SNY+FPV G
Subjt:  MTVSLEALAMAGIDSNEWAMDTEEWETNTHQMDNDIPPHLLADEDEDEENIITSPASNYTFPVTG

KAG7015383.1 hypothetical protein SDJN02_23018, partial [Cucurbita argyrosperma subsp. argyrosperma]4.8e-1670.77Show/hide
Query:  MTVSLEALAMAGIDSNEWAMDTEEWETNTHQMDNDIPPHLLADEDEDEENIITSPASNYTFPVTG
        M+VSLEALAMAGI SNEWAMD EEWE N  +++ND+PPHLLADED+D++N +TS  SNY+FPV G
Subjt:  MTVSLEALAMAGIDSNEWAMDTEEWETNTHQMDNDIPPHLLADEDEDEENIITSPASNYTFPVTG

TYK16880.1 Tetratricopeptide-like helical [Cucumis melo var. makuwa]1.4e-1259.15Show/hide
Query:  MTVSLEALAMAGIDSNEWAMDTEEWETNTHQMDNDIPPHLLADEDEDEE-NIITSPASNYTFPVTGKMTDW
        M+VSLEALAMAGIDSNEW MD +EWE N   +   +PPHLLADE++DE+   +TS  SNY F V G    W
Subjt:  MTVSLEALAMAGIDSNEWAMDTEEWETNTHQMDNDIPPHLLADEDEDEE-NIITSPASNYTFPVTGKMTDW

TrEMBL top hitse value%identityAlignment
A0A0A0KU90 Uncharacterized protein1.5e-1559.57Show/hide
Query:  MTVSLEALAMAGIDSNEWAMDTEEWETNTHQMDND--IPPHLLADEDEDEENIITSPASNYTFPVTGKMTDWWCFLLSGDR--CAIFRKIMEKR
        M VSLEALAMAGIDSNEWAMD EEW+TNTHQM+ND  IPPHLLA  DEDEENI           ++G   D    +    R   AI RK+MEKR
Subjt:  MTVSLEALAMAGIDSNEWAMDTEEWETNTHQMDND--IPPHLLADEDEDEENIITSPASNYTFPVTGKMTDWWCFLLSGDR--CAIFRKIMEKR

A0A0A0KWE7 Uncharacterized protein4.4e-1563.01Show/hide
Query:  MTVSLEALAMAGIDSNEWAMDTEEWETNTHQMDNDIPPHLLADEDEDE---ENIITSPASNYTFPVTGKMTDW
        M+VSLEALAMAGIDSNEWAMD EEWE N   +   +PPHLLADE++DE   E++ TS  SNY FPV G    W
Subjt:  MTVSLEALAMAGIDSNEWAMDTEEWETNTHQMDNDIPPHLLADEDEDE---ENIITSPASNYTFPVTGKMTDW

A0A5A7TS68 Tetratricopeptide-like helical7.0e-1359.15Show/hide
Query:  MTVSLEALAMAGIDSNEWAMDTEEWETNTHQMDNDIPPHLLADEDEDEE-NIITSPASNYTFPVTGKMTDW
        M+VSLEALAMAGIDSNEW MD +EWE N   +   +PPHLLADE++DE+   +TS  SNY F V G    W
Subjt:  MTVSLEALAMAGIDSNEWAMDTEEWETNTHQMDNDIPPHLLADEDEDEE-NIITSPASNYTFPVTGKMTDW

A0A5D3CZU0 Tetratricopeptide-like helical7.0e-1359.15Show/hide
Query:  MTVSLEALAMAGIDSNEWAMDTEEWETNTHQMDNDIPPHLLADEDEDEE-NIITSPASNYTFPVTGKMTDW
        M+VSLEALAMAGIDSNEW MD +EWE N   +   +PPHLLADE++DE+   +TS  SNY F V G    W
Subjt:  MTVSLEALAMAGIDSNEWAMDTEEWETNTHQMDNDIPPHLLADEDEDEE-NIITSPASNYTFPVTGKMTDW

A0A6J1FX98 uncharacterized protein LOC1114478803.5e-1265.62Show/hide
Query:  MTVSLEALAMAGIDSNEWAMDTEEWETNTHQMDNDIPPHLLADEDEDEENIITSPASNYTFPVT
        M+VSLEALAMAGIDSNEWAMD EEWE N  +M+ DIPPHLLADED++E+ + T       FP T
Subjt:  MTVSLEALAMAGIDSNEWAMDTEEWETNTHQMDNDIPPHLLADEDEDEENIITSPASNYTFPVT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G22320.1 unknown protein3.1e-0548.89Show/hide
Query:  LEALAMAGIDSNEWAMDTEEWETNTHQMDNDIPPHLLADEDEDEE
        +EALAMAG+D  EW +  EEWE      ++ +P HLLAD+ ++EE
Subjt:  LEALAMAGIDSNEWAMDTEEWETNTHQMDNDIPPHLLADEDEDEE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACGGTTTCTTTAGAAGCTTTGGCAATGGCGGGGATTGATTCCAATGAGTGGGCTATGGATACTGAAGAATGGGAAACAAATACTCATCAAATGGATAATGACATTCC
GCCACATTTATTAGCCGACGAAGACGAAGACGAAGAAAATATAATAACAAGTCCAGCCAGTAATTATACGTTTCCGGTCACCGGAAAGATGACGGACTGGTGGTGTTTTC
TGCTTTCCGGCGATCGATGTGCCATTTTTAGAAAAATCATGGAGAAGAGAAAACTTCCTATTAGAGTGTATTTCACCCTTTGTAATTAG
mRNA sequenceShow/hide mRNA sequence
ATGACGGTTTCTTTAGAAGCTTTGGCAATGGCGGGGATTGATTCCAATGAGTGGGCTATGGATACTGAAGAATGGGAAACAAATACTCATCAAATGGATAATGACATTCC
GCCACATTTATTAGCCGACGAAGACGAAGACGAAGAAAATATAATAACAAGTCCAGCCAGTAATTATACGTTTCCGGTCACCGGAAAGATGACGGACTGGTGGTGTTTTC
TGCTTTCCGGCGATCGATGTGCCATTTTTAGAAAAATCATGGAGAAGAGAAAACTTCCTATTAGAGTGTATTTCACCCTTTGTAATTAG
Protein sequenceShow/hide protein sequence
MTVSLEALAMAGIDSNEWAMDTEEWETNTHQMDNDIPPHLLADEDEDEENIITSPASNYTFPVTGKMTDWWCFLLSGDRCAIFRKIMEKRKLPIRVYFTLCN