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HG10001909 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10001909
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionTetratricopeptide-like helical
Genome locationChr11:1589123..1589419
RNA-Seq ExpressionHG10001909
SyntenyHG10001909
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0044707.1 Tetratricopeptide-like helical [Cucumis melo var. makuwa]3.6e-1357.53Show/hide
Query:  MSVSLEALAMAGIDLNEWNMDAEEWERSQMKNDIIPPHLLADHQ-EHDHNAVSSPITNFDFPAAGFFRTWRQK
        MSVSLEALAMAGID NEW MDA+EWER+++  D++PPHLLAD + + D   V+S I+N+ F   G F  WR++
Subjt:  MSVSLEALAMAGIDLNEWNMDAEEWERSQMKNDIIPPHLLADHQ-EHDHNAVSSPITNFDFPAAGFFRTWRQK
KAG6577295.1 hypothetical protein SDJN03_24869, partial [Cucurbita argyrosperma subsp. sororia]4.6e-1656.63Show/hide
Query:  MSVSLEALAMAGIDLNEWNMDAEEWERSQMKNDIIPPHLLADHQEHDHNAVSSPITNFDFPAAGFFRTWRQKAAELMVLMAFW
        MSVSLEALAMAGI  NEW MDAEEWER++++ND +PPHLLAD  + D N V+S ++N+ FP AGFF + R++      +  FW
Subjt:  MSVSLEALAMAGIDLNEWNMDAEEWERSQMKNDIIPPHLLADHQEHDHNAVSSPITNFDFPAAGFFRTWRQKAAELMVLMAFW
KAG7015383.1 hypothetical protein SDJN02_23018, partial [Cucurbita argyrosperma subsp. argyrosperma]2.3e-1555.42Show/hide
Query:  MSVSLEALAMAGIDLNEWNMDAEEWERSQMKNDIIPPHLLADHQEHDHNAVSSPITNFDFPAAGFFRTWRQKAAELMVLMAFW
        MSVSLEALAMAGI  NEW MDAEEWER++++ND +PPHLLAD  + D N V+S ++N+ FP AGFF +  ++      +  FW
Subjt:  MSVSLEALAMAGIDLNEWNMDAEEWERSQMKNDIIPPHLLADHQEHDHNAVSSPITNFDFPAAGFFRTWRQKAAELMVLMAFW
TYK16880.1 Tetratricopeptide-like helical [Cucumis melo var. makuwa]3.6e-1357.53Show/hide
Query:  MSVSLEALAMAGIDLNEWNMDAEEWERSQMKNDIIPPHLLADHQ-EHDHNAVSSPITNFDFPAAGFFRTWRQK
        MSVSLEALAMAGID NEW MDA+EWER+++  D++PPHLLAD + + D   V+S I+N+ F   G F  WR++
Subjt:  MSVSLEALAMAGIDLNEWNMDAEEWERSQMKNDIIPPHLLADHQ-EHDHNAVSSPITNFDFPAAGFFRTWRQK
XP_022943015.1 uncharacterized protein LOC111447880 [Cucurbita moschata]1.1e-0968.42Show/hide
Query:  MSVSLEALAMAGIDLNEWNMDAEEWERSQMKNDIIPPHLLADH-QEHDHNAVSSPIT
        MSVSLEALAMAGID NEW MDAEEWER++M+ D IPPHLLAD   E D  +   P T
Subjt:  MSVSLEALAMAGIDLNEWNMDAEEWERSQMKNDIIPPHLLADH-QEHDHNAVSSPIT
TrEMBL top hitse value%identityAlignment
A0A0A0KU90 Uncharacterized protein3.8e-0872Show/hide
Query:  MSVSLEALAMAGIDLNEWNMDAEEWERS--QMKN-DIIPPHLLADHQEHD
        M VSLEALAMAGID NEW MDAEEW+ +  QM+N DIIPPHLLAD  E +
Subjt:  MSVSLEALAMAGIDLNEWNMDAEEWERS--QMKN-DIIPPHLLADHQEHD
A0A0A0KWE7 Uncharacterized protein2.7e-1458.9Show/hide
Query:  MSVSLEALAMAGIDLNEWNMDAEEWERSQMKNDIIPPHLLADHQEH---DHNAVSSPITNFDFPAAGFFRTWR
        MSVSLEALAMAGID NEW MDAEEWER+++  D++PPHLLAD ++    D +  +S I+N+ FP  G F  WR
Subjt:  MSVSLEALAMAGIDLNEWNMDAEEWERSQMKNDIIPPHLLADHQEH---DHNAVSSPITNFDFPAAGFFRTWR
A0A5A7TS68 Tetratricopeptide-like helical1.8e-1357.53Show/hide
Query:  MSVSLEALAMAGIDLNEWNMDAEEWERSQMKNDIIPPHLLADHQ-EHDHNAVSSPITNFDFPAAGFFRTWRQK
        MSVSLEALAMAGID NEW MDA+EWER+++  D++PPHLLAD + + D   V+S I+N+ F   G F  WR++
Subjt:  MSVSLEALAMAGIDLNEWNMDAEEWERSQMKNDIIPPHLLADHQ-EHDHNAVSSPITNFDFPAAGFFRTWRQK
A0A5D3CZU0 Tetratricopeptide-like helical1.8e-1357.53Show/hide
Query:  MSVSLEALAMAGIDLNEWNMDAEEWERSQMKNDIIPPHLLADHQ-EHDHNAVSSPITNFDFPAAGFFRTWRQK
        MSVSLEALAMAGID NEW MDA+EWER+++  D++PPHLLAD + + D   V+S I+N+ F   G F  WR++
Subjt:  MSVSLEALAMAGIDLNEWNMDAEEWERSQMKNDIIPPHLLADHQ-EHDHNAVSSPITNFDFPAAGFFRTWRQK
A0A6J1FX98 uncharacterized protein LOC1114478805.3e-1068.42Show/hide
Query:  MSVSLEALAMAGIDLNEWNMDAEEWERSQMKNDIIPPHLLADH-QEHDHNAVSSPIT
        MSVSLEALAMAGID NEW MDAEEWER++M+ D IPPHLLAD   E D  +   P T
Subjt:  MSVSLEALAMAGIDLNEWNMDAEEWERSQMKNDIIPPHLLADH-QEHDHNAVSSPIT
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G22320.1 unknown protein2.1e-0648.98Show/hide
Query:  LEALAMAGIDLNEWNMDAEEWERSQMKNDIIPPHLLAD-----HQEHDH
        +EALAMAG+D  EW +  EEWE   ++  ++P HLLAD      QE DH
Subjt:  LEALAMAGIDLNEWNMDAEEWERSQMKNDIIPPHLLAD-----HQEHDH

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCAGTTTCTTTAGAAGCTTTGGCAATGGCAGGAATTGATTTGAATGAATGGAATATGGATGCTGAAGAATGGGAAAGAAGCCAAATGAAGAACGATATTATTCCGCC
ACATTTATTAGCCGACCACCAAGAACATGATCATAATGCAGTCAGTAGTCCGATCACTAACTTTGACTTTCCGGCCGCCGGATTCTTCCGCACCTGGCGGCAGAAGGCGG
CGGAGCTGATGGTGCTCATGGCATTTTGGGTGTCATCTCTGTCATTTAACCACAACCATAGAGAAAAGGGCTTCTAA
mRNA sequenceShow/hide mRNA sequence
ATGTCAGTTTCTTTAGAAGCTTTGGCAATGGCAGGAATTGATTTGAATGAATGGAATATGGATGCTGAAGAATGGGAAAGAAGCCAAATGAAGAACGATATTATTCCGCC
ACATTTATTAGCCGACCACCAAGAACATGATCATAATGCAGTCAGTAGTCCGATCACTAACTTTGACTTTCCGGCCGCCGGATTCTTCCGCACCTGGCGGCAGAAGGCGG
CGGAGCTGATGGTGCTCATGGCATTTTGGGTGTCATCTCTGTCATTTAACCACAACCATAGAGAAAAGGGCTTCTAA
Protein sequenceShow/hide protein sequence
MSVSLEALAMAGIDLNEWNMDAEEWERSQMKNDIIPPHLLADHQEHDHNAVSSPITNFDFPAAGFFRTWRQKAAELMVLMAFWVSSLSFNHNHREKGF