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HG10001926 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10001926
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionDNA-directed RNA polymerase subunit beta
Genome locationChr11:1735346..1735633
RNA-Seq ExpressionHG10001926
SyntenyHG10001926
Gene Ontology termsGO:0006351 - transcription, DNA-templated (biological process)
GO:0009507 - chloroplast (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
GO:0032549 - ribonucleoside binding (molecular function)
InterPro domainsIPR007120 - DNA-directed RNA polymerase, subunit 2, hybrid-binding domain
IPR015712 - DNA-directed RNA polymerase, subunit 2
IPR037033 - DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
DAC84625.1 TPA_asm: RNA polymerase beta subunit [Nicotiana obtusifolia]1.4e-3388.75Show/hide
Query:  QQTASPWVSEPKYPGKYRIFDGRMGNLFEQPVIIGKPYILKLIHQVDDKIHGRSSGYYALVTQQPLRGRAKQGGQRLGEI
        +QTA+PWV EP+YPGK RIFDGR GN FEQPVIIGKPYILKLIHQVDDKIHGRSSGYYALVTQQPLRGRAKQGGQR+GE+
Subjt:  QQTASPWVSEPKYPGKYRIFDGRMGNLFEQPVIIGKPYILKLIHQVDDKIHGRSSGYYALVTQQPLRGRAKQGGQRLGEI
YP_008964859.1 RNA polymerase beta subunit [Schwalbea americana]1.1e-3388.75Show/hide
Query:  QQTASPWVSEPKYPGKYRIFDGRMGNLFEQPVIIGKPYILKLIHQVDDKIHGRSSGYYALVTQQPLRGRAKQGGQRLGEI
        +QTA+PWV EP+YPGK RIFDGRMGN FEQPVIIGKPYILKLIHQVDDKIHGRSSG+YALVTQQPLRGRAKQGGQR+GE+
Subjt:  QQTASPWVSEPKYPGKYRIFDGRMGNLFEQPVIIGKPYILKLIHQVDDKIHGRSSGYYALVTQQPLRGRAKQGGQRLGEI
YP_009456053.1 RNA polymerase beta subunit [Momordica charantia]1.4e-3386.75Show/hide
Query:  QRVQQTASPWVSEPKYPGKYRIFDGRMGNLFEQPVIIGKPYILKLIHQVDDKIHGRSSGYYALVTQQPLRGRAKQGGQRLGEI
        Q  +QTASPWV EP+YPGK RIFDGR GN FEQPVIIGKPYILKLIHQVDDKIHGRSSG+YALVTQQPLRGRAKQGGQR+GE+
Subjt:  QRVQQTASPWVSEPKYPGKYRIFDGRMGNLFEQPVIIGKPYILKLIHQVDDKIHGRSSGYYALVTQQPLRGRAKQGGQRLGEI
YP_010008037.1 RNA polymerase beta subunit [Melaleuca leucadendra]1.8e-3388.75Show/hide
Query:  QQTASPWVSEPKYPGKYRIFDGRMGNLFEQPVIIGKPYILKLIHQVDDKIHGRSSGYYALVTQQPLRGRAKQGGQRLGEI
        QQTA+PWV EP+YPGK RIFDGR GN FEQPVIIGKPYILKLIHQVDDKIHGRSSG+YALVTQQPLRGRAKQGGQR+GE+
Subjt:  QQTASPWVSEPKYPGKYRIFDGRMGNLFEQPVIIGKPYILKLIHQVDDKIHGRSSGYYALVTQQPLRGRAKQGGQRLGEI
YP_010149514.1 RNA polymerase beta subunit [Angelica biserrata]1.8e-3385.54Show/hide
Query:  QRVQQTASPWVSEPKYPGKYRIFDGRMGNLFEQPVIIGKPYILKLIHQVDDKIHGRSSGYYALVTQQPLRGRAKQGGQRLGEI
        Q  +QTA+PWV EP+YPGK RIFDGR G+LFEQPVIIGKPYILKLIHQVDDKIHGRSSG+YALVTQQPLRGRAKQGGQR+GE+
Subjt:  QRVQQTASPWVSEPKYPGKYRIFDGRMGNLFEQPVIIGKPYILKLIHQVDDKIHGRSSGYYALVTQQPLRGRAKQGGQRLGEI
TrEMBL top hitse value%identityAlignment
A0A0S2GKW3 DNA-directed RNA polymerase subunit beta8.7e-3485.54Show/hide
Query:  QRVQQTASPWVSEPKYPGKYRIFDGRMGNLFEQPVIIGKPYILKLIHQVDDKIHGRSSGYYALVTQQPLRGRAKQGGQRLGEI
        Q  +QTA+PWV EP+YPGK RIFDGR G+LFEQPVIIGKPYILKLIHQVDDKIHGRSSG+YALVTQQPLRGRAKQGGQR+GE+
Subjt:  QRVQQTASPWVSEPKYPGKYRIFDGRMGNLFEQPVIIGKPYILKLIHQVDDKIHGRSSGYYALVTQQPLRGRAKQGGQRLGEI
A0A2I6BZX6 DNA-directed RNA polymerase subunit beta6.7e-3486.75Show/hide
Query:  QRVQQTASPWVSEPKYPGKYRIFDGRMGNLFEQPVIIGKPYILKLIHQVDDKIHGRSSGYYALVTQQPLRGRAKQGGQRLGEI
        Q  +QTASPWV EP+YPGK RIFDGR GN FEQPVIIGKPYILKLIHQVDDKIHGRSSG+YALVTQQPLRGRAKQGGQR+GE+
Subjt:  QRVQQTASPWVSEPKYPGKYRIFDGRMGNLFEQPVIIGKPYILKLIHQVDDKIHGRSSGYYALVTQQPLRGRAKQGGQRLGEI
A0A6V8F7T2 DNA-directed RNA polymerase subunit beta6.7e-3488.75Show/hide
Query:  QQTASPWVSEPKYPGKYRIFDGRMGNLFEQPVIIGKPYILKLIHQVDDKIHGRSSGYYALVTQQPLRGRAKQGGQRLGEI
        +QTA+PWV EP+YPGK RIFDGR GN FEQPVIIGKPYILKLIHQVDDKIHGRSSGYYALVTQQPLRGRAKQGGQR+GE+
Subjt:  QQTASPWVSEPKYPGKYRIFDGRMGNLFEQPVIIGKPYILKLIHQVDDKIHGRSSGYYALVTQQPLRGRAKQGGQRLGEI
A0A7U0R638 RNA polymerase beta subunit8.7e-3485.54Show/hide
Query:  QRVQQTASPWVSEPKYPGKYRIFDGRMGNLFEQPVIIGKPYILKLIHQVDDKIHGRSSGYYALVTQQPLRGRAKQGGQRLGEI
        Q  +QTA+PWV EP+YPGK RIFDGR G+LFEQPVIIGKPYILKLIHQVDDKIHGRSSG+YALVTQQPLRGRAKQGGQR+GE+
Subjt:  QRVQQTASPWVSEPKYPGKYRIFDGRMGNLFEQPVIIGKPYILKLIHQVDDKIHGRSSGYYALVTQQPLRGRAKQGGQRLGEI
V6BQG7 DNA-directed RNA polymerase subunit beta5.1e-3488.75Show/hide
Query:  QQTASPWVSEPKYPGKYRIFDGRMGNLFEQPVIIGKPYILKLIHQVDDKIHGRSSGYYALVTQQPLRGRAKQGGQRLGEI
        +QTA+PWV EP+YPGK RIFDGRMGN FEQPVIIGKPYILKLIHQVDDKIHGRSSG+YALVTQQPLRGRAKQGGQR+GE+
Subjt:  QQTASPWVSEPKYPGKYRIFDGRMGNLFEQPVIIGKPYILKLIHQVDDKIHGRSSGYYALVTQQPLRGRAKQGGQRLGEI
SwissProt top hitse value%identityAlignment
Q2MIJ5 DNA-directed RNA polymerase subunit beta6.9e-3687.5Show/hide
Query:  QQTASPWVSEPKYPGKYRIFDGRMGNLFEQPVIIGKPYILKLIHQVDDKIHGRSSGYYALVTQQPLRGRAKQGGQRLGEI
        +QTA+PWV EP+YPGK RIFDGR GN FEQPVIIGKPYILKLIHQVDDKIHGRSSG+YALVTQQPLRGRAKQGGQR+GE+
Subjt:  QQTASPWVSEPKYPGKYRIFDGRMGNLFEQPVIIGKPYILKLIHQVDDKIHGRSSGYYALVTQQPLRGRAKQGGQRLGEI
Q33C46 DNA-directed RNA polymerase subunit beta6.9e-3687.5Show/hide
Query:  QQTASPWVSEPKYPGKYRIFDGRMGNLFEQPVIIGKPYILKLIHQVDDKIHGRSSGYYALVTQQPLRGRAKQGGQRLGEI
        +QTA+PWV EP+YPGK RIFDGR GN FEQPVIIGKPYILKLIHQVDDKIHGRSSG+YALVTQQPLRGRAKQGGQR+GE+
Subjt:  QQTASPWVSEPKYPGKYRIFDGRMGNLFEQPVIIGKPYILKLIHQVDDKIHGRSSGYYALVTQQPLRGRAKQGGQRLGEI
Q3C1G7 DNA-directed RNA polymerase subunit beta6.9e-3687.5Show/hide
Query:  QQTASPWVSEPKYPGKYRIFDGRMGNLFEQPVIIGKPYILKLIHQVDDKIHGRSSGYYALVTQQPLRGRAKQGGQRLGEI
        +QTA+PWV EP+YPGK RIFDGR GN FEQPVIIGKPYILKLIHQVDDKIHGRSSG+YALVTQQPLRGRAKQGGQR+GE+
Subjt:  QQTASPWVSEPKYPGKYRIFDGRMGNLFEQPVIIGKPYILKLIHQVDDKIHGRSSGYYALVTQQPLRGRAKQGGQRLGEI
Q4VZP1 DNA-directed RNA polymerase subunit beta3.1e-3688.75Show/hide
Query:  QQTASPWVSEPKYPGKYRIFDGRMGNLFEQPVIIGKPYILKLIHQVDDKIHGRSSGYYALVTQQPLRGRAKQGGQRLGEI
        +QTASPWV EP+YPGK RIFDGR GN FEQPVIIGKPYILKLIHQVDDKIHGRSSG+YALVTQQPLRGRAKQGGQR+GE+
Subjt:  QQTASPWVSEPKYPGKYRIFDGRMGNLFEQPVIIGKPYILKLIHQVDDKIHGRSSGYYALVTQQPLRGRAKQGGQRLGEI
Q8S8X9 DNA-directed RNA polymerase subunit beta6.9e-3687.5Show/hide
Query:  QQTASPWVSEPKYPGKYRIFDGRMGNLFEQPVIIGKPYILKLIHQVDDKIHGRSSGYYALVTQQPLRGRAKQGGQRLGEI
        +QTA+PWV EP+YPGK RIFDGR GN FEQPVIIGKPYILKLIHQVDDKIHGRSSG+YALVTQQPLRGRAKQGGQR+GE+
Subjt:  QQTASPWVSEPKYPGKYRIFDGRMGNLFEQPVIIGKPYILKLIHQVDDKIHGRSSGYYALVTQQPLRGRAKQGGQRLGEI
Arabidopsis top hitse value%identityAlignment
AT3G23780.1 nuclear RNA polymerase D2A6.9e-0730.3Show/hide
Query:  GKYRIFDGRMGNLFEQPVIIGKPYILKLIHQVDDKIHGRSSGYYALVTQQPLRGRAKQGGQRLGEI
        G  R+++GR G +    + +G  +  +L+H  +DK+  R++G    +T+QP+  R + GG + GE+
Subjt:  GKYRIFDGRMGNLFEQPVIIGKPYILKLIHQVDDKIHGRSSGYYALVTQQPLRGRAKQGGQRLGEI
AT3G23780.2 nuclear RNA polymerase D2A6.9e-0730.3Show/hide
Query:  GKYRIFDGRMGNLFEQPVIIGKPYILKLIHQVDDKIHGRSSGYYALVTQQPLRGRAKQGGQRLGEI
        G  R+++GR G +    + +G  +  +L+H  +DK+  R++G    +T+QP+  R + GG + GE+
Subjt:  GKYRIFDGRMGNLFEQPVIIGKPYILKLIHQVDDKIHGRSSGYYALVTQQPLRGRAKQGGQRLGEI
AT4G21710.1 DNA-directed RNA polymerase family protein1.5e-0939.39Show/hide
Query:  GKYRIFDGRMGNLFEQPVIIGKPYILKLIHQVDDKIHGRSSGYYALVTQQPLRGRAKQGGQRLGEI
        G  R+++G  G      + +G  Y  +L H VDDKIH R  G   ++T+QP  GR++ GG R GE+
Subjt:  GKYRIFDGRMGNLFEQPVIIGKPYILKLIHQVDDKIHGRSSGYYALVTQQPLRGRAKQGGQRLGEI
AT5G45140.1 nuclear RNA polymerase C21.9e-0941.18Show/hide
Query:  YPGKYRIFDGRMGNLFEQPVIIGKPYILKLIHQVDDKIHGRSSGYYALVTQQPLRGRAKQGGQRLGEI
        Y GK  ++ G  G   E  + +G  Y  KL H V DK+H R SG   ++T+QP  G++K GG R+GE+
Subjt:  YPGKYRIFDGRMGNLFEQPVIIGKPYILKLIHQVDDKIHGRSSGYYALVTQQPLRGRAKQGGQRLGEI
ATCG00190.1 RNA polymerase subunit beta4.1e-3685Show/hide
Query:  QQTASPWVSEPKYPGKYRIFDGRMGNLFEQPVIIGKPYILKLIHQVDDKIHGRSSGYYALVTQQPLRGRAKQGGQRLGEI
        +QTA+PWV EP+YPGK RIFDGR G+ FEQPVIIGKPYILKLIHQVDDKIHGRSSG+YALVTQQPLRGR+KQGGQR+GE+
Subjt:  QQTASPWVSEPKYPGKYRIFDGRMGNLFEQPVIIGKPYILKLIHQVDDKIHGRSSGYYALVTQQPLRGRAKQGGQRLGEI

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGCCAATAAGCAAACAGCGAGTCCAGCAAACAGCGAGTCCATGGGTATCTGAACCCAAGTATCCGGGAAAATACAGAATATTTGATGGAAGAATGGGAAATCTTTT
TGAACAACCTGTTATAATAGGAAAGCCTTATATCTTGAAATTAATTCATCAAGTTGATGATAAAATACACGGACGTTCTAGTGGATATTATGCACTTGTTACACAACAAC
CCCTTAGAGGAAGGGCCAAGCAAGGTGGACAACGGTTGGGGGAAATTTATTCAAATATAGATTCGTAA
mRNA sequenceShow/hide mRNA sequence
ATGAAGCCAATAAGCAAACAGCGAGTCCAGCAAACAGCGAGTCCATGGGTATCTGAACCCAAGTATCCGGGAAAATACAGAATATTTGATGGAAGAATGGGAAATCTTTT
TGAACAACCTGTTATAATAGGAAAGCCTTATATCTTGAAATTAATTCATCAAGTTGATGATAAAATACACGGACGTTCTAGTGGATATTATGCACTTGTTACACAACAAC
CCCTTAGAGGAAGGGCCAAGCAAGGTGGACAACGGTTGGGGGAAATTTATTCAAATATAGATTCGTAA
Protein sequenceShow/hide protein sequence
MKPISKQRVQQTASPWVSEPKYPGKYRIFDGRMGNLFEQPVIIGKPYILKLIHQVDDKIHGRSSGYYALVTQQPLRGRAKQGGQRLGEIYSNIDS