; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10002081 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10002081
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionSerine hydroxymethyltransferase
Genome locationChr11:3200642..3201364
RNA-Seq ExpressionHG10002081
SyntenyHG10002081
Gene Ontology termsGO:0019264 - glycine biosynthetic process from serine (biological process)
GO:0032259 - methylation (biological process)
GO:0035999 - tetrahydrofolate interconversion (biological process)
GO:0004372 - glycine hydroxymethyltransferase activity (molecular function)
GO:0008168 - methyltransferase activity (molecular function)
GO:0030170 - pyridoxal phosphate binding (molecular function)
InterPro domainsIPR001085 - Serine hydroxymethyltransferase
IPR015422 - Pyridoxal phosphate-dependent transferase, small domain
IPR015424 - Pyridoxal phosphate-dependent transferase
IPR039429 - Serine hydroxymethyltransferase-like domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AFK45159.1 unknown [Lotus japonicus]8.9e-2991.89Show/hide
Query:  QVKTPEYKAYQEQVLSNCSKFAQSLAERGYELVSGGTENHLVLVNLKNKGIDCSIVEKVLESVHIAANKNTVPG
        Q  TPEYKAYQEQVLSNCSKFAQ+L+ERGYELVSGGTENHLVLVNLKNKGID S VEKVLESVHIAANKNTVPG
Subjt:  QVKTPEYKAYQEQVLSNCSKFAQSLAERGYELVSGGTENHLVLVNLKNKGIDCSIVEKVLESVHIAANKNTVPG

KAF3439159.1 hypothetical protein FNV43_RR17434 [Rhamnella rubrinervis]1.2e-2891.89Show/hide
Query:  QVKTPEYKAYQEQVLSNCSKFAQSLAERGYELVSGGTENHLVLVNLKNKGIDCSIVEKVLESVHIAANKNTVPG
        Q  TPEYKAYQEQVLSNCSKFAQSL ERGY+LVSGGTENHLVLVNLKNKGID S VEKVLESVHIAANKNTVPG
Subjt:  QVKTPEYKAYQEQVLSNCSKFAQSLAERGYELVSGGTENHLVLVNLKNKGIDCSIVEKVLESVHIAANKNTVPG

XP_021667953.1 serine hydroxymethyltransferase, mitochondrial-like isoform X2 [Hevea brasiliensis]1.2e-2891.89Show/hide
Query:  QVKTPEYKAYQEQVLSNCSKFAQSLAERGYELVSGGTENHLVLVNLKNKGIDCSIVEKVLESVHIAANKNTVPG
        QV TPEYKAYQEQVLSNCSKFAQSL E+GYELVSGGTENHLVLVNL+NKGID S VEKVLESVHIAANKNTVPG
Subjt:  QVKTPEYKAYQEQVLSNCSKFAQSLAERGYELVSGGTENHLVLVNLKNKGIDCSIVEKVLESVHIAANKNTVPG

XP_021888102.1 serine hydroxymethyltransferase, mitochondrial-like [Carica papaya]6.8e-2990.54Show/hide
Query:  QVKTPEYKAYQEQVLSNCSKFAQSLAERGYELVSGGTENHLVLVNLKNKGIDCSIVEKVLESVHIAANKNTVPG
        QVKTPEYKAYQ+QVLSNCSKFAQSL E+GYELVSGGT+NHLVLVNLKNKGID S VEKVLES+HIAANKNTVPG
Subjt:  QVKTPEYKAYQEQVLSNCSKFAQSLAERGYELVSGGTENHLVLVNLKNKGIDCSIVEKVLESVHIAANKNTVPG

XP_022133094.1 serine hydroxymethyltransferase, mitochondrial [Momordica charantia]8.9e-2991.89Show/hide
Query:  QVKTPEYKAYQEQVLSNCSKFAQSLAERGYELVSGGTENHLVLVNLKNKGIDCSIVEKVLESVHIAANKNTVPG
        Q  TPEYKAYQEQVLSNCSKFAQSL E+GYELVSGGTENHLVLVNLKNKGID S VEKVLESVHIAANKNTVPG
Subjt:  QVKTPEYKAYQEQVLSNCSKFAQSLAERGYELVSGGTENHLVLVNLKNKGIDCSIVEKVLESVHIAANKNTVPG

TrEMBL top hitse value%identityAlignment
A0A2N9IL28 Serine hydroxymethyltransferase5.6e-2990.54Show/hide
Query:  QVKTPEYKAYQEQVLSNCSKFAQSLAERGYELVSGGTENHLVLVNLKNKGIDCSIVEKVLESVHIAANKNTVPG
        Q  TPEYKAYQEQVLSNCSKFAQSLAE+GYELVSGGTENHLVLVNLKNKGID S VEK+LE+VHIAANKNTVPG
Subjt:  QVKTPEYKAYQEQVLSNCSKFAQSLAERGYELVSGGTENHLVLVNLKNKGIDCSIVEKVLESVHIAANKNTVPG

A0A5N5NMF8 Serine hydroxymethyltransferase5.6e-2991.89Show/hide
Query:  QVKTPEYKAYQEQVLSNCSKFAQSLAERGYELVSGGTENHLVLVNLKNKGIDCSIVEKVLESVHIAANKNTVPG
        QVKTPEYKAYQEQVLSNCSKFAQSL E+GYELVSGGTENHLVLVNL+NKGID S VEKVLE VHIAANKNTVPG
Subjt:  QVKTPEYKAYQEQVLSNCSKFAQSLAERGYELVSGGTENHLVLVNLKNKGIDCSIVEKVLESVHIAANKNTVPG

A0A6J1BUZ8 Serine hydroxymethyltransferase4.3e-2991.89Show/hide
Query:  QVKTPEYKAYQEQVLSNCSKFAQSLAERGYELVSGGTENHLVLVNLKNKGIDCSIVEKVLESVHIAANKNTVPG
        Q  TPEYKAYQEQVLSNCSKFAQSL E+GYELVSGGTENHLVLVNLKNKGID S VEKVLESVHIAANKNTVPG
Subjt:  QVKTPEYKAYQEQVLSNCSKFAQSLAERGYELVSGGTENHLVLVNLKNKGIDCSIVEKVLESVHIAANKNTVPG

A0A6N2MKE2 Serine hydroxymethyltransferase5.6e-2991.89Show/hide
Query:  QVKTPEYKAYQEQVLSNCSKFAQSLAERGYELVSGGTENHLVLVNLKNKGIDCSIVEKVLESVHIAANKNTVPG
        QVKTPEYKAYQEQVLSNCSKFAQSL E+GYELVSGGTENHLVLVNL+NKGID S VEKVLE VHIAANKNTVPG
Subjt:  QVKTPEYKAYQEQVLSNCSKFAQSLAERGYELVSGGTENHLVLVNLKNKGIDCSIVEKVLESVHIAANKNTVPG

I3SY17 Serine hydroxymethyltransferase4.3e-2991.89Show/hide
Query:  QVKTPEYKAYQEQVLSNCSKFAQSLAERGYELVSGGTENHLVLVNLKNKGIDCSIVEKVLESVHIAANKNTVPG
        Q  TPEYKAYQEQVLSNCSKFAQ+L+ERGYELVSGGTENHLVLVNLKNKGID S VEKVLESVHIAANKNTVPG
Subjt:  QVKTPEYKAYQEQVLSNCSKFAQSLAERGYELVSGGTENHLVLVNLKNKGIDCSIVEKVLESVHIAANKNTVPG

SwissProt top hitse value%identityAlignment
P34899 Serine hydroxymethyltransferase, mitochondrial2.7e-2883.78Show/hide
Query:  QVKTPEYKAYQEQVLSNCSKFAQSLAERGYELVSGGTENHLVLVNLKNKGIDCSIVEKVLESVHIAANKNTVPG
        Q  TPEY+AYQEQVLSN SKFA++L+E+GY+LVSGGTENHLVLVNLKNKGID S VEKVLE VHIAANKNTVPG
Subjt:  QVKTPEYKAYQEQVLSNCSKFAQSLAERGYELVSGGTENHLVLVNLKNKGIDCSIVEKVLESVHIAANKNTVPG

P49358 Serine hydroxymethyltransferase 2, mitochondrial3.5e-2882.43Show/hide
Query:  QVKTPEYKAYQEQVLSNCSKFAQSLAERGYELVSGGTENHLVLVNLKNKGIDCSIVEKVLESVHIAANKNTVPG
        Q  T EYKAYQEQV+SNC+KFA++L + GYELVSGGTENHLVLVNLKNKGID S VEKVLE+VHIAANKNTVPG
Subjt:  QVKTPEYKAYQEQVLSNCSKFAQSLAERGYELVSGGTENHLVLVNLKNKGIDCSIVEKVLESVHIAANKNTVPG

P50433 Serine hydroxymethyltransferase, mitochondrial9.2e-2983.78Show/hide
Query:  QVKTPEYKAYQEQVLSNCSKFAQSLAERGYELVSGGTENHLVLVNLKNKGIDCSIVEKVLESVHIAANKNTVPG
        Q  TPEY+AYQEQVLSN SKFAQ+L E+GYELVSGGT+NHLVLVN+KNKGID S VEKVLE+VHIAANKNTVPG
Subjt:  QVKTPEYKAYQEQVLSNCSKFAQSLAERGYELVSGGTENHLVLVNLKNKGIDCSIVEKVLESVHIAANKNTVPG

Q94C74 Serine hydroxymethyltransferase 2, mitochondrial4.6e-2881.08Show/hide
Query:  QVKTPEYKAYQEQVLSNCSKFAQSLAERGYELVSGGTENHLVLVNLKNKGIDCSIVEKVLESVHIAANKNTVPG
        Q +TPEYKAYQ+QVL NCSKFA++L  +GY+LVSGGT+NHLVLVNLKNKGID S VEKVLE VHIAANKNTVPG
Subjt:  QVKTPEYKAYQEQVLSNCSKFAQSLAERGYELVSGGTENHLVLVNLKNKGIDCSIVEKVLESVHIAANKNTVPG

Q9SZJ5 Serine hydroxymethyltransferase 1, mitochondrial5.1e-2782.43Show/hide
Query:  QVKTPEYKAYQEQVLSNCSKFAQSLAERGYELVSGGTENHLVLVNLKNKGIDCSIVEKVLESVHIAANKNTVPG
        Q  T EYKAYQEQVLSN +KFAQ+L ERGYELVSGGT+NHLVLVNLK KGID S VEKVLE+VHIA+NKNTVPG
Subjt:  QVKTPEYKAYQEQVLSNCSKFAQSLAERGYELVSGGTENHLVLVNLKNKGIDCSIVEKVLESVHIAANKNTVPG

Arabidopsis top hitse value%identityAlignment
AT4G32520.1 serine hydroxymethyltransferase 31.7e-1754.17Show/hide
Query:  KTPEYKAYQEQVLSNCSKFAQSLAERGYELVSGGTENHLVLVNLKNKGIDCSIVEKVLESVHIAANKNTVPG
        ++PE+KAYQ++V+SNC   A  L E G++LVSGG++NHLVLV+L+  G+D + VEK+L+   I  NKN+VPG
Subjt:  KTPEYKAYQEQVLSNCSKFAQSLAERGYELVSGGTENHLVLVNLKNKGIDCSIVEKVLESVHIAANKNTVPG

AT4G37930.1 serine transhydroxymethyltransferase 13.6e-2882.43Show/hide
Query:  QVKTPEYKAYQEQVLSNCSKFAQSLAERGYELVSGGTENHLVLVNLKNKGIDCSIVEKVLESVHIAANKNTVPG
        Q  T EYKAYQEQVLSN +KFAQ+L ERGYELVSGGT+NHLVLVNLK KGID S VEKVLE+VHIA+NKNTVPG
Subjt:  QVKTPEYKAYQEQVLSNCSKFAQSLAERGYELVSGGTENHLVLVNLKNKGIDCSIVEKVLESVHIAANKNTVPG

AT5G26780.1 serine hydroxymethyltransferase 23.3e-2981.08Show/hide
Query:  QVKTPEYKAYQEQVLSNCSKFAQSLAERGYELVSGGTENHLVLVNLKNKGIDCSIVEKVLESVHIAANKNTVPG
        Q +TPEYKAYQ+QVL NCSKFA++L  +GY+LVSGGT+NHLVLVNLKNKGID S VEKVLE VHIAANKNTVPG
Subjt:  QVKTPEYKAYQEQVLSNCSKFAQSLAERGYELVSGGTENHLVLVNLKNKGIDCSIVEKVLESVHIAANKNTVPG

AT5G26780.2 serine hydroxymethyltransferase 22.0e-2667.78Show/hide
Query:  QVKTPEYKAYQEQVLSNCSKFA----------------QSLAERGYELVSGGTENHLVLVNLKNKGIDCSIVEKVLESVHIAANKNTVPG
        Q +TPEYKAYQ+QVL NCSKFA                Q+L  +GY+LVSGGT+NHLVLVNLKNKGID S VEKVLE VHIAANKNTVPG
Subjt:  QVKTPEYKAYQEQVLSNCSKFA----------------QSLAERGYELVSGGTENHLVLVNLKNKGIDCSIVEKVLESVHIAANKNTVPG

AT5G26780.3 serine hydroxymethyltransferase 22.0e-2667.78Show/hide
Query:  QVKTPEYKAYQEQVLSNCSKFA----------------QSLAERGYELVSGGTENHLVLVNLKNKGIDCSIVEKVLESVHIAANKNTVPG
        Q +TPEYKAYQ+QVL NCSKFA                Q+L  +GY+LVSGGT+NHLVLVNLKNKGID S VEKVLE VHIAANKNTVPG
Subjt:  QVKTPEYKAYQEQVLSNCSKFA----------------QSLAERGYELVSGGTENHLVLVNLKNKGIDCSIVEKVLESVHIAANKNTVPG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTTACTCTTTTCTGGATGCAGGTTAAAACTCCGGAGTACAAAGCCTATCAAGAGCAAGTTCTCAGTAATTGTTCCAAATTTGCACAGTCTCTGGCTGAAAGAGGATA
TGAACTTGTCTCTGGAGGAACAGAGAATCATTTGGTTTTGGTGAATTTGAAGAATAAGGGCATTGATTGCTCCATAGTTGAAAAGGTTCTGGAGTCCGTCCACATAGCAG
CTAACAAAAACACAGTTCCGGGGAGATGTCTCTGCTATGGTTCCGGGTGGCATCAGGATGGGTTGTTGCTCTTTCCATTGATTGGACAGTACCTATGTGATGTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGCTTACTCTTTTCTGGATGCAGGTTAAAACTCCGGAGTACAAAGCCTATCAAGAGCAAGTTCTCAGTAATTGTTCCAAATTTGCACAGTCTCTGGCTGAAAGAGGATA
TGAACTTGTCTCTGGAGGAACAGAGAATCATTTGGTTTTGGTGAATTTGAAGAATAAGGGCATTGATTGCTCCATAGTTGAAAAGGTTCTGGAGTCCGTCCACATAGCAG
CTAACAAAAACACAGTTCCGGGGAGATGTCTCTGCTATGGTTCCGGGTGGCATCAGGATGGGTTGTTGCTCTTTCCATTGATTGGACAGTACCTATGTGATGTTTAG
Protein sequenceShow/hide protein sequence
MLTLFWMQVKTPEYKAYQEQVLSNCSKFAQSLAERGYELVSGGTENHLVLVNLKNKGIDCSIVEKVLESVHIAANKNTVPGRCLCYGSGWHQDGLLLFPLIGQYLCDV