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HG10002096 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10002096
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationChr11:3314669..3315004
RNA-Seq ExpressionHG10002096
SyntenyHG10002096
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYJ99315.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]9.2e-1340Show/hide
Query:  RQFIKSIWSSPNIAWASLDVINKAGGILILWNDPSTHVDEAIQGNHSLSLRITLMDSYSFWLTGVYGPSKAKDRDHLW-ELYDFSHLCNDQWIIG
        ++ IKS+W S +I W + +    +GGILILW+  +  +    +G  SLS    L ++ S+WLTG+YGP K ++R H W EL++  HL +  WI+G
Subjt:  RQFIKSIWSSPNIAWASLDVINKAGGILILWNDPSTHVDEAIQGNHSLSLRITLMDSYSFWLTGVYGPSKAKDRDHLW-ELYDFSHLCNDQWIIG

TYK03140.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]9.2e-1338.95Show/hide
Query:  RQFIKSIWSSPNIAWASLDVINKAGGILILWNDPSTHVDEAIQGNHSLSLRITLMDSYSFWLTGVYGPSKAKDRDHLW-ELYDFSHLCNDQWIIG
        ++ IKS+W S +I W + + +  +GGILILW+  +  +    +G  SLS      ++ S+WLTG+YGP K ++R H W EL++  HL +  WI+G
Subjt:  RQFIKSIWSSPNIAWASLDVINKAGGILILWNDPSTHVDEAIQGNHSLSLRITLMDSYSFWLTGVYGPSKAKDRDHLW-ELYDFSHLCNDQWIIG

XP_022145142.1 uncharacterized protein LOC111014657 [Momordica charantia]1.7e-1947.47Show/hide
Query:  ADIGRQFIKSIWSSPNIAWASLDVINKAGGILILWNDPSTHVDEAIQGNHSLSLRITLMDSYSFWLTGVYGPSKAKDRDHLW-ELYDFSHLCNDQWIIG
        + I  +FIKS+WSS +IAWASLD    +GGI++LW+  ST   E I G+ S+S+   L D++++WLTGVY P K K R   W EL+D + LC   W++G
Subjt:  ADIGRQFIKSIWSSPNIAWASLDVINKAGGILILWNDPSTHVDEAIQGNHSLSLRITLMDSYSFWLTGVYGPSKAKDRDHLW-ELYDFSHLCNDQWIIG

XP_022158956.1 uncharacterized protein LOC111025405 [Momordica charantia]5.2e-1645.05Show/hide
Query:  IKSIWSSPNIAWASLDVINKAGGILILWNDPSTHVDEAIQGNHSLSLRITLMDSYSFWLTGVYGPSKAKDRDHLW-ELYDFSHLCNDQWII
        +KS+WS+  I W++LD    A GILILWNDP     E I+G  SL++   L D + FW++G+YGPS  +     W EL D S LC + WI+
Subjt:  IKSIWSSPNIAWASLDVINKAGGILILWNDPSTHVDEAIQGNHSLSLRITLMDSYSFWLTGVYGPSKAKDRDHLW-ELYDFSHLCNDQWII

XP_031739979.1 uncharacterized protein LOC116403332 [Cucumis sativus]6.1e-1742Show/hide
Query:  MADIGRQFIKSIWSSPNIAWASLDVINKAGGILILWNDPSTHVDEAIQGNHSLSLRITLMDSYSFWLTGVYGPSKAKDRDHL-WELYDFSHLCNDQWIIG
        ++ + R  +KS+WSS  + WA+L+    +GGILILW + S  V ++IQG  S+S+       +S W+TGVYGPS  + RD   WEL     LCN+ W +G
Subjt:  MADIGRQFIKSIWSSPNIAWASLDVINKAGGILILWNDPSTHVDEAIQGNHSLSLRITLMDSYSFWLTGVYGPSKAKDRDHL-WELYDFSHLCNDQWIIG

TrEMBL top hitse value%identityAlignment
A0A5D3BLV7 LINE-1 retrotransposable element ORF2 protein4.4e-1340Show/hide
Query:  RQFIKSIWSSPNIAWASLDVINKAGGILILWNDPSTHVDEAIQGNHSLSLRITLMDSYSFWLTGVYGPSKAKDRDHLW-ELYDFSHLCNDQWIIG
        ++ IKS+W S +I W + +    +GGILILW+  +  +    +G  SLS    L ++ S+WLTG+YGP K ++R H W EL++  HL +  WI+G
Subjt:  RQFIKSIWSSPNIAWASLDVINKAGGILILWNDPSTHVDEAIQGNHSLSLRITLMDSYSFWLTGVYGPSKAKDRDHLW-ELYDFSHLCNDQWIIG

A0A5D3BVM7 LINE-1 retrotransposable element ORF2 protein4.4e-1338.95Show/hide
Query:  RQFIKSIWSSPNIAWASLDVINKAGGILILWNDPSTHVDEAIQGNHSLSLRITLMDSYSFWLTGVYGPSKAKDRDHLW-ELYDFSHLCNDQWIIG
        ++ IKS+W S +I W + + +  +GGILILW+  +  +    +G  SLS      ++ S+WLTG+YGP K ++R H W EL++  HL +  WI+G
Subjt:  RQFIKSIWSSPNIAWASLDVINKAGGILILWNDPSTHVDEAIQGNHSLSLRITLMDSYSFWLTGVYGPSKAKDRDHLW-ELYDFSHLCNDQWIIG

A0A6J1CVN2 uncharacterized protein LOC1110146578.4e-2047.47Show/hide
Query:  ADIGRQFIKSIWSSPNIAWASLDVINKAGGILILWNDPSTHVDEAIQGNHSLSLRITLMDSYSFWLTGVYGPSKAKDRDHLW-ELYDFSHLCNDQWIIG
        + I  +FIKS+WSS +IAWASLD    +GGI++LW+  ST   E I G+ S+S+   L D++++WLTGVY P K K R   W EL+D + LC   W++G
Subjt:  ADIGRQFIKSIWSSPNIAWASLDVINKAGGILILWNDPSTHVDEAIQGNHSLSLRITLMDSYSFWLTGVYGPSKAKDRDHLW-ELYDFSHLCNDQWIIG

A0A6J1E2G6 uncharacterized protein LOC1110254052.5e-1645.05Show/hide
Query:  IKSIWSSPNIAWASLDVINKAGGILILWNDPSTHVDEAIQGNHSLSLRITLMDSYSFWLTGVYGPSKAKDRDHLW-ELYDFSHLCNDQWII
        +KS+WS+  I W++LD    A GILILWNDP     E I+G  SL++   L D + FW++G+YGPS  +     W EL D S LC + WI+
Subjt:  IKSIWSSPNIAWASLDVINKAGGILILWNDPSTHVDEAIQGNHSLSLRITLMDSYSFWLTGVYGPSKAKDRDHLW-ELYDFSHLCNDQWII

A5CAA2 Reverse transcriptase domain-containing protein7.6e-1337.89Show/hide
Query:  RQFIKSIWSSPNIAWASLDVINKAGGILILWNDPSTHVDEAIQGNHSLSLRITLMDSYSFWLTGVYGPSKAKDRDHLW-ELYDFSHLCNDQWIIG
        R+F+ S+W++ N  WA+L     +GGILI+W+      +E + G+ S+S++ TL    S WL+ VYGP+ +  R  LW EL D + L + +W +G
Subjt:  RQFIKSIWSSPNIAWASLDVINKAGGILILWNDPSTHVDEAIQGNHSLSLRITLMDSYSFWLTGVYGPSKAKDRDHLW-ELYDFSHLCNDQWIIG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCGATATTGGTCGGCAGTTCATTAAATCCATATGGAGCTCACCGAACATTGCTTGGGCCTCCTTGGATGTGATTAACAAGGCTGGTGGTATTCTCATTCTATGGAA
CGATCCATCTACCCATGTTGACGAAGCCATTCAAGGTAACCATTCTCTCTCCTTACGGATTACTCTCATGGATAGTTATTCTTTTTGGTTGACAGGGGTTTATGGCCCAT
CAAAGGCTAAAGATAGGGATCATTTATGGGAACTATATGATTTCTCTCATCTTTGTAATGATCAATGGATCATTGGGGTGACTTCAATGTATCAATGTATCGAGATGGTC
ATTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCCGATATTGGTCGGCAGTTCATTAAATCCATATGGAGCTCACCGAACATTGCTTGGGCCTCCTTGGATGTGATTAACAAGGCTGGTGGTATTCTCATTCTATGGAA
CGATCCATCTACCCATGTTGACGAAGCCATTCAAGGTAACCATTCTCTCTCCTTACGGATTACTCTCATGGATAGTTATTCTTTTTGGTTGACAGGGGTTTATGGCCCAT
CAAAGGCTAAAGATAGGGATCATTTATGGGAACTATATGATTTCTCTCATCTTTGTAATGATCAATGGATCATTGGGGTGACTTCAATGTATCAATGTATCGAGATGGTC
ATTTGA
Protein sequenceShow/hide protein sequence
MADIGRQFIKSIWSSPNIAWASLDVINKAGGILILWNDPSTHVDEAIQGNHSLSLRITLMDSYSFWLTGVYGPSKAKDRDHLWELYDFSHLCNDQWIIGVTSMYQCIEMV
I