; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10002180 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10002180
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionBED-type domain-containing protein
Genome locationChr11:4241681..4244503
RNA-Seq ExpressionHG10002180
SyntenyHG10002180
Gene Ontology termsGO:0009791 - post-embryonic development (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0046872 - metal ion binding (molecular function)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR003656 - Zinc finger, BED-type
IPR036236 - Zinc finger C2H2 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_011652997.1 zinc finger BED domain-containing protein DAYSLEEPER [Cucumis sativus]9.1e-3986.17Show/hide
Query:  MELQNGETDNEIHQSGDTTSMELEPDLPLALMDNSNKRRRKKSIVWDYFTVQTVEDGCIRACCNQCNKSFAYITGSKLAGTSHLKRHIALGICP
        MELQNGETDNE HQSG TTSMELEP LPL  MD+S+KRRRKKS VWDYFTVQT EDGCI+A CNQCNK+FAYI GSKLAGTSHLKRHIALGICP
Subjt:  MELQNGETDNEIHQSGDTTSMELEPDLPLALMDNSNKRRRKKSIVWDYFTVQTVEDGCIRACCNQCNKSFAYITGSKLAGTSHLKRHIALGICP

XP_016901464.1 PREDICTED: zinc finger BED domain-containing protein DAYSLEEPER-like [Cucumis melo]7.7e-3886.17Show/hide
Query:  MELQNGETDNEIHQSGDTTSMELEPDLPLALMDNSNKRRRKKSIVWDYFTVQTVEDGCIRACCNQCNKSFAYITGSKLAGTSHLKRHIALGICP
        MELQNGETDNE  QSG TTSMELE  LPL  MDNSNKRRRKKS VWDYFTVQT EDGCI+A CNQCNK+FAYI GSKLAGTSHLKRHIALGICP
Subjt:  MELQNGETDNEIHQSGDTTSMELEPDLPLALMDNSNKRRRKKSIVWDYFTVQTVEDGCIRACCNQCNKSFAYITGSKLAGTSHLKRHIALGICP

XP_022998617.1 zinc finger BED domain-containing protein DAYSLEEPER-like [Cucurbita maxima]2.5e-3685.11Show/hide
Query:  MELQNGETDNEIHQSGDTTSMELEPDLPLALMDNSNKRRRKKSIVWDYFTVQTVEDGCIRACCNQCNKSFAYITGSKLAGTSHLKRHIALGICP
        MEL +GE DN+IHQS  TTSM   PDLPL L+D  NKRRRKKSIVWDYFTVQTVEDGCIRA CNQCNKSFAYITGSKLAGTSHLKRHIALGICP
Subjt:  MELQNGETDNEIHQSGDTTSMELEPDLPLALMDNSNKRRRKKSIVWDYFTVQTVEDGCIRACCNQCNKSFAYITGSKLAGTSHLKRHIALGICP

XP_023523308.1 zinc finger BED domain-containing protein DAYSLEEPER-like [Cucurbita pepo subsp. pepo]9.4e-3684.04Show/hide
Query:  MELQNGETDNEIHQSGDTTSMELEPDLPLALMDNSNKRRRKKSIVWDYFTVQTVEDGCIRACCNQCNKSFAYITGSKLAGTSHLKRHIALGICP
        MEL +GE D++IHQS  TTSM   PDLPL L+D  NKRRRKKSIVWDYFTVQTVEDGCIRA CNQCNKSFAYITGSKLAGTSHLKRHIALGICP
Subjt:  MELQNGETDNEIHQSGDTTSMELEPDLPLALMDNSNKRRRKKSIVWDYFTVQTVEDGCIRACCNQCNKSFAYITGSKLAGTSHLKRHIALGICP

XP_038880735.1 zinc finger BED domain-containing protein DAYSLEEPER-like [Benincasa hispida]4.6e-4392.78Show/hide
Query:  MELQ---NGETDNEIHQSGDTTSMELEPDLPLALMDNSNKRRRKKSIVWDYFTVQTVEDGCIRACCNQCNKSFAYITGSKLAGTSHLKRHIALGICP
        MELQ   NGETDNEIHQSG TTSMELEP+LPL LMDN NKRRRKKSIVWDYFTVQTVEDGCIRACCNQCNKSFAYITGSKLAGTSHLKRHIALGICP
Subjt:  MELQ---NGETDNEIHQSGDTTSMELEPDLPLALMDNSNKRRRKKSIVWDYFTVQTVEDGCIRACCNQCNKSFAYITGSKLAGTSHLKRHIALGICP

TrEMBL top hitse value%identityAlignment
A0A0A0KTI7 BED-type domain-containing protein4.4e-3986.17Show/hide
Query:  MELQNGETDNEIHQSGDTTSMELEPDLPLALMDNSNKRRRKKSIVWDYFTVQTVEDGCIRACCNQCNKSFAYITGSKLAGTSHLKRHIALGICP
        MELQNGETDNE HQSG TTSMELEP LPL  MD+S+KRRRKKS VWDYFTVQT EDGCI+A CNQCNK+FAYI GSKLAGTSHLKRHIALGICP
Subjt:  MELQNGETDNEIHQSGDTTSMELEPDLPLALMDNSNKRRRKKSIVWDYFTVQTVEDGCIRACCNQCNKSFAYITGSKLAGTSHLKRHIALGICP

A0A1S4DZS8 zinc finger BED domain-containing protein DAYSLEEPER-like3.7e-3886.17Show/hide
Query:  MELQNGETDNEIHQSGDTTSMELEPDLPLALMDNSNKRRRKKSIVWDYFTVQTVEDGCIRACCNQCNKSFAYITGSKLAGTSHLKRHIALGICP
        MELQNGETDNE  QSG TTSMELE  LPL  MDNSNKRRRKKS VWDYFTVQT EDGCI+A CNQCNK+FAYI GSKLAGTSHLKRHIALGICP
Subjt:  MELQNGETDNEIHQSGDTTSMELEPDLPLALMDNSNKRRRKKSIVWDYFTVQTVEDGCIRACCNQCNKSFAYITGSKLAGTSHLKRHIALGICP

A0A6J1DGQ5 zinc finger BED domain-containing protein DAYSLEEPER-like3.8e-3577.23Show/hide
Query:  MELQNGETDNEIHQSGDTTSMELEPDL-------PLALMDNSNKRRRKKSIVWDYFTVQTVEDGCIRACCNQCNKSFAYITGSKLAGTSHLKRHIALGIC
        MELQNG+TDN IHQS  T  +EL+  L       PL L    NKRRRKKSIVWDYFTVQTVEDGCIRACCNQCNKSFAY+TGSKLAGTSHLKRHIALGIC
Subjt:  MELQNGETDNEIHQSGDTTSMELEPDL-------PLALMDNSNKRRRKKSIVWDYFTVQTVEDGCIRACCNQCNKSFAYITGSKLAGTSHLKRHIALGIC

Query:  P
        P
Subjt:  P

A0A6J1G936 zinc finger BED domain-containing protein DAYSLEEPER-like4.5e-3684.04Show/hide
Query:  MELQNGETDNEIHQSGDTTSMELEPDLPLALMDNSNKRRRKKSIVWDYFTVQTVEDGCIRACCNQCNKSFAYITGSKLAGTSHLKRHIALGICP
        MEL +GE D++IHQS  TTSM   PDLPL L+D  NKRRRKKSIVWDYFTVQTVEDGCIRA CNQCNKSFAYITGSKLAGTSHLKRHIALGICP
Subjt:  MELQNGETDNEIHQSGDTTSMELEPDLPLALMDNSNKRRRKKSIVWDYFTVQTVEDGCIRACCNQCNKSFAYITGSKLAGTSHLKRHIALGICP

A0A6J1K8H2 zinc finger BED domain-containing protein DAYSLEEPER-like1.2e-3685.11Show/hide
Query:  MELQNGETDNEIHQSGDTTSMELEPDLPLALMDNSNKRRRKKSIVWDYFTVQTVEDGCIRACCNQCNKSFAYITGSKLAGTSHLKRHIALGICP
        MEL +GE DN+IHQS  TTSM   PDLPL L+D  NKRRRKKSIVWDYFTVQTVEDGCIRA CNQCNKSFAYITGSKLAGTSHLKRHIALGICP
Subjt:  MELQNGETDNEIHQSGDTTSMELEPDLPLALMDNSNKRRRKKSIVWDYFTVQTVEDGCIRACCNQCNKSFAYITGSKLAGTSHLKRHIALGICP

SwissProt top hitse value%identityAlignment
B9FJG3 Zinc finger BED domain-containing protein RICESLEEPER 14.1e-1856.72Show/hide
Query:  SNKRRRKKSIVWDYFTVQTVEDGCIRACCNQCNKSFAYITGSKLAGTSHLKRHIALGICPPHIQLQH
        +++RRRKKS+VW++FT++ V  G  RACC  C ++FAY +GSK+AGTSHLKRHI LG CP     +H
Subjt:  SNKRRRKKSIVWDYFTVQTVEDGCIRACCNQCNKSFAYITGSKLAGTSHLKRHIALGICPPHIQLQH

Q0JMB2 Zinc finger BED domain-containing protein RICESLEEPER 49.8e-1254.55Show/hide
Query:  SNKRRRKKSIVWDYFTVQTVEDGCIRACCNQCNKSFAYITGSKLAGTSHLKRHIA
        S + +++KS +W++FT+  V DGC RA C  CN+S AY +GSK +GTSHL RHIA
Subjt:  SNKRRRKKSIVWDYFTVQTVEDGCIRACCNQCNKSFAYITGSKLAGTSHLKRHIA

Q6AVI0 Zinc finger BED domain-containing protein RICESLEEPER 25.4e-1861.67Show/hide
Query:  SNKRRRKKSIVWDYFTVQTVEDGCIRACCNQCNKSFAYITGSKLAGTSHLKRHIALGICP
        +++RRRKKS+VW++FT++ V  G  RACC  C ++FAY +GSK+AGTSHLKRHI LG CP
Subjt:  SNKRRRKKSIVWDYFTVQTVEDGCIRACCNQCNKSFAYITGSKLAGTSHLKRHIALGICP

Q75HY5 Zinc finger BED domain-containing protein RICESLEEPER 31.5e-1556.67Show/hide
Query:  SNKRRRKKSIVWDYFTVQTVEDGCIRACCNQCNKSFAYITGSKLAGTSHLKRHIALGICP
        +++RRRKKS+VW++FT++ +  G  RA CN C ++FAY  GSK++GTSHLKRHI L  CP
Subjt:  SNKRRRKKSIVWDYFTVQTVEDGCIRACCNQCNKSFAYITGSKLAGTSHLKRHIALGICP

Q9M2N5 Zinc finger BED domain-containing protein DAYSLEEPER5.9e-1748.86Show/hide
Query:  ETDNEIHQSGDTTSMELEPDLPLALMDNSNKRRRKKSIVWDYFTVQTVEDGCIRACCNQCNKSFAYITGSKLAGTSHLKRHIALGICP
        ET  E++   +  S E +P           KRR+KKS+VW++FT++ VE  C RA C  CN+SFAY  G+K+AGTSHLKRHI  G CP
Subjt:  ETDNEIHQSGDTTSMELEPDLPLALMDNSNKRRRKKSIVWDYFTVQTVEDGCIRACCNQCNKSFAYITGSKLAGTSHLKRHIALGICP

Arabidopsis top hitse value%identityAlignment
AT3G42170.1 BED zinc finger ;hAT family dimerisation domain4.2e-1848.86Show/hide
Query:  ETDNEIHQSGDTTSMELEPDLPLALMDNSNKRRRKKSIVWDYFTVQTVEDGCIRACCNQCNKSFAYITGSKLAGTSHLKRHIALGICP
        ET  E++   +  S E +P           KRR+KKS+VW++FT++ VE  C RA C  CN+SFAY  G+K+AGTSHLKRHI  G CP
Subjt:  ETDNEIHQSGDTTSMELEPDLPLALMDNSNKRRRKKSIVWDYFTVQTVEDGCIRACCNQCNKSFAYITGSKLAGTSHLKRHIALGICP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAATTGCAGAACGGAGAAACTGATAATGAAATTCATCAATCTGGTGATACAACTTCAATGGAACTGGAACCGGATCTTCCTTTAGCACTTATGGACAATTCAAATAA
GCGAAGAAGAAAAAAGTCTATTGTTTGGGATTATTTCACTGTTCAGACAGTTGAAGATGGATGTATCAGAGCCTGTTGTAACCAGTGCAATAAATCTTTTGCTTACATTA
CTGGTTCAAAGTTAGCAGGCACCAGCCACCTAAAGCGTCACATTGCTTTAGGAATCTGCCCTCCTCACATTCAGTTGCAACATATGGCTTCTATGTTGCATCCTGTTGAA
GATTGTTTGAAATGGAATAGAGATTTTATGCTTCTATGTCCAACTAATGAATACAGTTTATCATTTGTCAGACTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAATTGCAGAACGGAGAAACTGATAATGAAATTCATCAATCTGGTGATACAACTTCAATGGAACTGGAACCGGATCTTCCTTTAGCACTTATGGACAATTCAAATAA
GCGAAGAAGAAAAAAGTCTATTGTTTGGGATTATTTCACTGTTCAGACAGTTGAAGATGGATGTATCAGAGCCTGTTGTAACCAGTGCAATAAATCTTTTGCTTACATTA
CTGGTTCAAAGTTAGCAGGCACCAGCCACCTAAAGCGTCACATTGCTTTAGGAATCTGCCCTCCTCACATTCAGTTGCAACATATGGCTTCTATGTTGCATCCTGTTGAA
GATTGTTTGAAATGGAATAGAGATTTTATGCTTCTATGTCCAACTAATGAATACAGTTTATCATTTGTCAGACTTTGA
Protein sequenceShow/hide protein sequence
MELQNGETDNEIHQSGDTTSMELEPDLPLALMDNSNKRRRKKSIVWDYFTVQTVEDGCIRACCNQCNKSFAYITGSKLAGTSHLKRHIALGICPPHIQLQHMASMLHPVE
DCLKWNRDFMLLCPTNEYSLSFVRL