; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10002237 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10002237
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionTATA-binding protein-associated factor 2N-like
Genome locationChr11:4772230..4772601
RNA-Seq ExpressionHG10002237
SyntenyHG10002237
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR001876 - Zinc finger, RanBP2-type
IPR036443 - Zinc finger, RanBP2-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0044427.1 putative RNA-binding protein C17H9.04c-like [Cucumis melo var. makuwa]3.2e-5993.97Show/hide
Query:  MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKNGSGGGRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFDIPRPSPRGISPF
        MSRPGDWNCRSCQHLNFQRRDMCQRCG+PK+G G GRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFDIPRPSPRGISPF
Subjt:  MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKNGSGGGRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFDIPRPSPRGISPF

Query:  TFASPARTTASAWKSG
         FASPAR  ASAWKSG
Subjt:  TFASPARTTASAWKSG

KGN52873.1 hypothetical protein Csa_014917 [Cucumis sativus]1.4e-6293.44Show/hide
Query:  MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKNGSGGGRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFDIPRPSPRGISPF
        MSRPGDWNCRSCQHLNFQRRDMCQRCG+PK+G G GRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFDIPR SPRGISPF
Subjt:  MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKNGSGGGRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFDIPRPSPRGISPF

Query:  TFASPARTTASAWKSGDWICAR
         F SPART ASAWKSGDWICAR
Subjt:  TFASPARTTASAWKSGDWICAR

XP_008454250.1 PREDICTED: uncharacterized RNA-binding protein C17H9.04c-like [Cucumis melo]9.7e-6494.26Show/hide
Query:  MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKNGSGGGRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFDIPRPSPRGISPF
        MSRPGDWNCRSCQHLNFQRRDMCQRCG+PK+G G GRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFDIPRPSPRGISPF
Subjt:  MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKNGSGGGRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFDIPRPSPRGISPF

Query:  TFASPARTTASAWKSGDWICAR
         FASPAR  ASAWKSGDWICAR
Subjt:  TFASPARTTASAWKSGDWICAR

XP_022955940.1 uncharacterized RNA-binding protein C17H9.04c-like [Cucurbita moschata]2.9e-6087.7Show/hide
Query:  MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKNGSGGGRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFDIPRPSPRGISPF
        M+RPGDWNC SC HLNFQRRD+CQRCGDPK G GG R GSGFG+GGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFD+PRP+PRGISPF
Subjt:  MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKNGSGGGRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFDIPRPSPRGISPF

Query:  TFASPARTTASAWKSGDWICAR
         FA+PAR+ ASAWKSGDWICAR
Subjt:  TFASPARTTASAWKSGDWICAR

XP_038892097.1 zinc finger Ran-binding domain-containing protein 2-like [Benincasa hispida]2.0e-6495.08Show/hide
Query:  MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKNGSGGGRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFDIPRPSPRGISPF
        MSRPGDWNCRSCQHLNFQRRDMCQRCGDPK+G G GRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFDIPRPSPRGISP+
Subjt:  MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKNGSGGGRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFDIPRPSPRGISPF

Query:  TFASPARTTASAWKSGDWICAR
         FASPART ASAWKSGDWICAR
Subjt:  TFASPARTTASAWKSGDWICAR

TrEMBL top hitse value%identityAlignment
A0A0A0KTI0 Uncharacterized protein6.8e-6393.44Show/hide
Query:  MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKNGSGGGRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFDIPRPSPRGISPF
        MSRPGDWNCRSCQHLNFQRRDMCQRCG+PK+G G GRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFDIPR SPRGISPF
Subjt:  MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKNGSGGGRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFDIPRPSPRGISPF

Query:  TFASPARTTASAWKSGDWICAR
         F SPART ASAWKSGDWICAR
Subjt:  TFASPARTTASAWKSGDWICAR

A0A1S3BZE4 uncharacterized RNA-binding protein C17H9.04c-like4.7e-6494.26Show/hide
Query:  MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKNGSGGGRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFDIPRPSPRGISPF
        MSRPGDWNCRSCQHLNFQRRDMCQRCG+PK+G G GRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFDIPRPSPRGISPF
Subjt:  MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKNGSGGGRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFDIPRPSPRGISPF

Query:  TFASPARTTASAWKSGDWICAR
         FASPAR  ASAWKSGDWICAR
Subjt:  TFASPARTTASAWKSGDWICAR

A0A5A7TRE1 Putative RNA-binding protein C17H9.04c-like1.6e-5993.97Show/hide
Query:  MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKNGSGGGRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFDIPRPSPRGISPF
        MSRPGDWNCRSCQHLNFQRRDMCQRCG+PK+G G GRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFDIPRPSPRGISPF
Subjt:  MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKNGSGGGRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFDIPRPSPRGISPF

Query:  TFASPARTTASAWKSG
         FASPAR  ASAWKSG
Subjt:  TFASPARTTASAWKSG

A0A6J1GWG9 uncharacterized RNA-binding protein C17H9.04c-like1.4e-6087.7Show/hide
Query:  MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKNGSGGGRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFDIPRPSPRGISPF
        M+RPGDWNC SC HLNFQRRD+CQRCGDPK G GG R GSGFG+GGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFD+PRP+PRGISPF
Subjt:  MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKNGSGGGRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFDIPRPSPRGISPF

Query:  TFASPARTTASAWKSGDWICAR
         FA+PAR+ ASAWKSGDWICAR
Subjt:  TFASPARTTASAWKSGDWICAR

A0A6J1IX27 ranBP2-type zinc finger protein At1g67325-like1.7e-5886.89Show/hide
Query:  MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKNGSGGGRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFDIPRPSPRGISPF
        M+RPGDWNC SC HLNFQRRD+CQRCGDPK G GGGR GSGFG+GGSDVRPGDWYCS+GNCGAHNFASRSSCFKCGAFKDDMSAFDFD+PRP+PRGISPF
Subjt:  MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKNGSGGGRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFDIPRPSPRGISPF

Query:  TFASPARTTASAWKSGDWICAR
         F +PAR+ ASAWKSGDWICAR
Subjt:  TFASPARTTASAWKSGDWICAR

SwissProt top hitse value%identityAlignment
O13801 Uncharacterized RNA-binding protein C17H9.04c3.3e-0631.54Show/hide
Query:  RPGDWNCRSCQHLNFQRRDMCQRCGDP------------------KNGSGGGRGGSGF--GYGGS-----------------------------------
        RPGDWNC  C   NFQRR  C RC  P                    G+  G G S F   YGGS                                   
Subjt:  RPGDWNCRSCQHLNFQRRDMCQRCGDP------------------KNGSGGGRGGSGF--GYGGS-----------------------------------

Query:  DVRPGDWYCSVGNCGAHNFASRSSCFKCGA
          R GDW C    CG HNFA    C +CGA
Subjt:  DVRPGDWYCSVGNCGAHNFASRSSCFKCGA

Q27294 RNA-binding protein cabeza3.6e-0553.19Show/hide
Query:  RPGDWNCRSCQHLNFQRRDMCQRCGDPK---NGSGGGRGGSGFGYGG
        R GDW C SC + NF  R+ C RC  PK    GS GG GG G+G GG
Subjt:  RPGDWNCRSCQHLNFQRRDMCQRCGDPK---NGSGGGRGGSGFGYGG

Arabidopsis top hitse value%identityAlignment
AT1G70650.1 Ran BP2/NZF zinc finger-like superfamily protein3.7e-0531.51Show/hide
Query:  RPGDWNCRSCQHLNFQRRDMCQRCGDPKNGSGGGRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSCFKC
        + GDW C++C  LNF +   C RC D                    + PG+W C   +C   NF   S C KC
Subjt:  RPGDWNCRSCQHLNFQRRDMCQRCGDPKNGSGGGRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSCFKC

AT1G70650.2 Ran BP2/NZF zinc finger-like superfamily protein3.7e-0531.51Show/hide
Query:  RPGDWNCRSCQHLNFQRRDMCQRCGDPKNGSGGGRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSCFKC
        + GDW C++C  LNF +   C RC D                    + PG+W C   +C   NF   S C KC
Subjt:  RPGDWNCRSCQHLNFQRRDMCQRCGDPKNGSGGGRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSCFKC

AT2G26695.1 Ran BP2/NZF zinc finger-like superfamily protein3.7e-2139.83Show/hide
Query:  GDWNCRSCQHLNFQRRDMCQRCGDPKNGSGGGRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFDIPRPSPRGISPFTFAS
        GDW C +CQH NF++R+ CQ+CG PK    GG   S + Y  ++V  GDWYC   NCG+HN+ASR+SC++CG  K + +   +        G     + +
Subjt:  GDWNCRSCQHLNFQRRDMCQRCGDPKNGSGGGRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFDIPRPSPRGISPFTFAS

Query:  PARTTASAWKSGDWICAR
                WK+GDW+C R
Subjt:  PARTTASAWKSGDWICAR

AT3G15680.1 Ran BP2/NZF zinc finger-like superfamily protein5.7e-3856.55Show/hide
Query:  MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKNGSG----------GGRGGSGFGY-GGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSA-----
        MSRPGDWNCRSC HLNFQRRD CQRCGD ++G G          GGR  S FG+  GSDVRPGDWYC+VGNCG HNFASRS+CFKCG FKD+  A     
Subjt:  MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKNGSG----------GGRGGSGFGY-GGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSA-----

Query:  -------FDFDIPRPSPRGISPFTFASPARTTASAWKSGDWICAR
               FD DI R             P     S+WKSGDWIC R
Subjt:  -------FDFDIPRPSPRGISPFTFASPARTTASAWKSGDWICAR

AT5G25490.1 Ran BP2/NZF zinc finger-like superfamily protein9.4e-3352.48Show/hide
Query:  MSRPGDWNCRSCQHLNFQRRDMCQRCGDPK---------NGSGGGRGGSGFGYG-GSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFD----
        M+RPGDWNCR C HLNFQRRD CQRC +P+         +G GG    S FG+  G DVRPGDWYC++G+CG HNFA+RSSCFKCGA KD+ S       
Subjt:  MSRPGDWNCRSCQHLNFQRRDMCQRCGDPK---------NGSGGGRGGSGFGYG-GSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFD----

Query:  ---FDIPRPSPRGISPFTFASP--ARTTASAWKSGDWICAR
            D+     RG+  F  +S     T  S WKSGDWIC R
Subjt:  ---FDIPRPSPRGISPFTFASP--ARTTASAWKSGDWICAR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTAGACCAGGAGACTGGAATTGCAGGTCGTGCCAGCACTTGAACTTCCAGAGAAGGGACATGTGCCAGCGGTGCGGCGATCCAAAGAATGGCAGCGGTGGCGGAAG
AGGCGGATCTGGTTTCGGGTACGGAGGGTCAGATGTGAGGCCTGGGGACTGGTATTGTAGTGTGGGGAACTGTGGAGCTCACAATTTTGCAAGCCGGTCAAGTTGCTTCA
AATGTGGGGCTTTCAAAGACGACATGTCGGCCTTCGACTTTGATATTCCTCGTCCTAGTCCTAGAGGGATTTCCCCATTTACTTTTGCCAGTCCCGCCCGTACTACTGCC
TCGGCTTGGAAATCTGGTGACTGGATTTGTGCCCGGTATTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGTAGACCAGGAGACTGGAATTGCAGGTCGTGCCAGCACTTGAACTTCCAGAGAAGGGACATGTGCCAGCGGTGCGGCGATCCAAAGAATGGCAGCGGTGGCGGAAG
AGGCGGATCTGGTTTCGGGTACGGAGGGTCAGATGTGAGGCCTGGGGACTGGTATTGTAGTGTGGGGAACTGTGGAGCTCACAATTTTGCAAGCCGGTCAAGTTGCTTCA
AATGTGGGGCTTTCAAAGACGACATGTCGGCCTTCGACTTTGATATTCCTCGTCCTAGTCCTAGAGGGATTTCCCCATTTACTTTTGCCAGTCCCGCCCGTACTACTGCC
TCGGCTTGGAAATCTGGTGACTGGATTTGTGCCCGGTATTAG
Protein sequenceShow/hide protein sequence
MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKNGSGGGRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFDIPRPSPRGISPFTFASPARTTA
SAWKSGDWICARY