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HG10002239 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10002239
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Descriptionlys-63-specific deubiquitinase BRCC36-like
Genome locationChr11:4785765..4788074
RNA-Seq ExpressionHG10002239
SyntenyHG10002239
Gene Ontology termsGO:0006302 - double-strand break repair (biological process)
GO:0070537 - histone H2A K63-linked deubiquitination (biological process)
GO:0070531 - BRCA1-A complex (cellular component)
GO:0070552 - BRISC complex (cellular component)
GO:0004843 - thiol-dependent ubiquitin-specific protease activity (molecular function)
GO:0008237 - metallopeptidase activity (molecular function)
GO:0031593 - polyubiquitin modification-dependent protein binding (molecular function)
GO:0046872 - metal ion binding (molecular function)
GO:0070122 - isopeptidase activity (molecular function)
InterPro domainsIPR000555 - JAB1/MPN/MOV34 metalloenzyme domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6606786.1 Lys-63-specific deubiquitinase BRCC36, partial [Cucurbita argyrosperma subsp. sororia]1.4e-3893.41Show/hide
Query:  MSLTAVKMSEDIWFTCLTHALSTETEEIMGLLLGDIQHSKNGSVTALIWGASPQTRSDRRKDRVETHPEQLAAASAQAEISFAPFSFGKFF
        MSLTAVKMSED+WFTCLTHALSTETEEIMGLLLGDI+HSKNGSVTALIWGASPQTRSDRRKDRVETHPEQLAAASAQA+ISFAPF   KFF
Subjt:  MSLTAVKMSEDIWFTCLTHALSTETEEIMGLLLGDIQHSKNGSVTALIWGASPQTRSDRRKDRVETHPEQLAAASAQAEISFAPFSFGKFF

XP_022153607.1 lys-63-specific deubiquitinase BRCC36 isoform X1 [Momordica charantia]1.3e-3687.64Show/hide
Query:  EIQKESGDPKMSLTAVKMSEDIWFTCLTHALSTETEEIMGLLLGDIQHSKNGSVTALIWGASPQTRSDRRKDRVETHPEQLAAASAQAE
        E+++++GD KMSLT VKMSED+WFTCLTHALSTETEEIMGLLLGDI+HS+NG+VTALIWGASPQTRSDRRKDRVETHPEQLAAASAQAE
Subjt:  EIQKESGDPKMSLTAVKMSEDIWFTCLTHALSTETEEIMGLLLGDIQHSKNGSVTALIWGASPQTRSDRRKDRVETHPEQLAAASAQAE

XP_022153609.1 lys-63-specific deubiquitinase BRCC36 isoform X2 [Momordica charantia]1.3e-3687.64Show/hide
Query:  EIQKESGDPKMSLTAVKMSEDIWFTCLTHALSTETEEIMGLLLGDIQHSKNGSVTALIWGASPQTRSDRRKDRVETHPEQLAAASAQAE
        E+++++GD KMSLT VKMSED+WFTCLTHALSTETEEIMGLLLGDI+HS+NG+VTALIWGASPQTRSDRRKDRVETHPEQLAAASAQAE
Subjt:  EIQKESGDPKMSLTAVKMSEDIWFTCLTHALSTETEEIMGLLLGDIQHSKNGSVTALIWGASPQTRSDRRKDRVETHPEQLAAASAQAE

XP_023528524.1 lys-63-specific deubiquitinase BRCC36-like isoform X1 [Cucurbita pepo subsp. pepo]1.1e-3592.86Show/hide
Query:  SGDPKMSLTAVKMSEDIWFTCLTHALSTETEEIMGLLLGDIQHSKNGSVTALIWGASPQTRSDRRKDRVETHPEQLAAASAQAE
        +GD KMSLT+VKMSED+WFTCLTHALSTETEEIMGLLLGDI+HS+NGSVTALIWGASPQTRSDRRKDRVETHPEQLAAASAQAE
Subjt:  SGDPKMSLTAVKMSEDIWFTCLTHALSTETEEIMGLLLGDIQHSKNGSVTALIWGASPQTRSDRRKDRVETHPEQLAAASAQAE

XP_023528526.1 COP9 signalosome complex subunit 5-like isoform X3 [Cucurbita pepo subsp. pepo]1.1e-3592.86Show/hide
Query:  SGDPKMSLTAVKMSEDIWFTCLTHALSTETEEIMGLLLGDIQHSKNGSVTALIWGASPQTRSDRRKDRVETHPEQLAAASAQAE
        +GD KMSLT+VKMSED+WFTCLTHALSTETEEIMGLLLGDI+HS+NGSVTALIWGASPQTRSDRRKDRVETHPEQLAAASAQAE
Subjt:  SGDPKMSLTAVKMSEDIWFTCLTHALSTETEEIMGLLLGDIQHSKNGSVTALIWGASPQTRSDRRKDRVETHPEQLAAASAQAE

TrEMBL top hitse value%identityAlignment
A0A0A0KWR1 MPN domain-containing protein7.7e-3597.47Show/hide
Query:  MSLTAVKMSEDIWFTCLTHALSTETEEIMGLLLGDIQHSKNGSVTALIWGASPQTRSDRRKDRVETHPEQLAAASAQAE
        MSLTAVKMSED+WFTCLTHALSTETEEIMGLLLGDI+HSKNGSVTALIWGASPQTRSDRRKDRVETHPEQLAAASAQAE
Subjt:  MSLTAVKMSEDIWFTCLTHALSTETEEIMGLLLGDIQHSKNGSVTALIWGASPQTRSDRRKDRVETHPEQLAAASAQAE

A0A1S3BY68 lys-63-specific deubiquitinase BRCC36 isoform X17.7e-3597.47Show/hide
Query:  MSLTAVKMSEDIWFTCLTHALSTETEEIMGLLLGDIQHSKNGSVTALIWGASPQTRSDRRKDRVETHPEQLAAASAQAE
        MSLTAVKMSED+WFTCLTHALSTETEEIMGLLLGDI+HSKNGSVTALIWGASPQTRSDRRKDRVETHPEQLAAASAQAE
Subjt:  MSLTAVKMSEDIWFTCLTHALSTETEEIMGLLLGDIQHSKNGSVTALIWGASPQTRSDRRKDRVETHPEQLAAASAQAE

A0A6J1DJE3 lys-63-specific deubiquitinase BRCC36 isoform X16.3e-3787.64Show/hide
Query:  EIQKESGDPKMSLTAVKMSEDIWFTCLTHALSTETEEIMGLLLGDIQHSKNGSVTALIWGASPQTRSDRRKDRVETHPEQLAAASAQAE
        E+++++GD KMSLT VKMSED+WFTCLTHALSTETEEIMGLLLGDI+HS+NG+VTALIWGASPQTRSDRRKDRVETHPEQLAAASAQAE
Subjt:  EIQKESGDPKMSLTAVKMSEDIWFTCLTHALSTETEEIMGLLLGDIQHSKNGSVTALIWGASPQTRSDRRKDRVETHPEQLAAASAQAE

A0A6J1DJK4 lys-63-specific deubiquitinase BRCC36 isoform X26.3e-3787.64Show/hide
Query:  EIQKESGDPKMSLTAVKMSEDIWFTCLTHALSTETEEIMGLLLGDIQHSKNGSVTALIWGASPQTRSDRRKDRVETHPEQLAAASAQAE
        E+++++GD KMSLT VKMSED+WFTCLTHALSTETEEIMGLLLGDI+HS+NG+VTALIWGASPQTRSDRRKDRVETHPEQLAAASAQAE
Subjt:  EIQKESGDPKMSLTAVKMSEDIWFTCLTHALSTETEEIMGLLLGDIQHSKNGSVTALIWGASPQTRSDRRKDRVETHPEQLAAASAQAE

A0A6J1G9J9 lys-63-specific deubiquitinase BRCC36-like1.7e-3496.2Show/hide
Query:  MSLTAVKMSEDIWFTCLTHALSTETEEIMGLLLGDIQHSKNGSVTALIWGASPQTRSDRRKDRVETHPEQLAAASAQAE
        MSLTAVKMSED+WFTCLTHALSTETEEIMGLLLGDI+HSKNGSVTALIWGASPQTRSDRRKDRVETHPEQLAAASAQA+
Subjt:  MSLTAVKMSEDIWFTCLTHALSTETEEIMGLLLGDIQHSKNGSVTALIWGASPQTRSDRRKDRVETHPEQLAAASAQAE

SwissProt top hitse value%identityAlignment
B0KWU8 Lys-63-specific deubiquitinase BRCC363.1e-0937.76Show/hide
Query:  SLTAVKMSEDIWFTCLTHALSTETEEIMGLLLGDIQHSKNGSVTALIWGASPQT--------------------RSDRRKDRVETHPEQLAAASAQAE
        ++ AV +  D +  CL HALSTE EE+MGL +G++             G   +T                    RSD+RKDRVE  PEQL+AAS +AE
Subjt:  SLTAVKMSEDIWFTCLTHALSTETEEIMGLLLGDIQHSKNGSVTALIWGASPQT--------------------RSDRRKDRVETHPEQLAAASAQAE

B5X8M4 Lys-63-specific deubiquitinase BRCC361.3e-1043.04Show/hide
Query:  MSLTAVKMSEDIWFTCLTHALSTETEEIMGLLLGDIQHSKNGSVTALIWGASPQTRSDRRKDRVETHPEQLAAASAQAE
        M+++AV +  D +  C+ HALSTE EE+MGL +G++  ++   + ++I       RSD+RKDRVE  PEQL++A+ +AE
Subjt:  MSLTAVKMSEDIWFTCLTHALSTETEEIMGLLLGDIQHSKNGSVTALIWGASPQTRSDRRKDRVETHPEQLAAASAQAE

P46736 Lys-63-specific deubiquitinase BRCC363.1e-0937.76Show/hide
Query:  SLTAVKMSEDIWFTCLTHALSTETEEIMGLLLGDIQHSKNGSVTALIWGASPQT--------------------RSDRRKDRVETHPEQLAAASAQAE
        ++ AV +  D +  CL HALSTE EE+MGL +G++             G   +T                    RSD+RKDRVE  PEQL+AAS +AE
Subjt:  SLTAVKMSEDIWFTCLTHALSTETEEIMGLLLGDIQHSKNGSVTALIWGASPQT--------------------RSDRRKDRVETHPEQLAAASAQAE

Q4VA72 Lys-63-specific deubiquitinase BRCC362.2e-1044.3Show/hide
Query:  MSLTAVKMSEDIWFTCLTHALSTETEEIMGLLLGDIQHSKNGSVTALIWGASPQTRSDRRKDRVETHPEQLAAASAQAE
        M++ AV +  D +  C+TH+LSTE EE+MGL +G++   K   + ++I       RSD+RKDRVE  PEQL+AA+ +A+
Subjt:  MSLTAVKMSEDIWFTCLTHALSTETEEIMGLLLGDIQHSKNGSVTALIWGASPQTRSDRRKDRVETHPEQLAAASAQAE

Q66GV6 Lys-63-specific deubiquitinase BRCC362.8e-1044.3Show/hide
Query:  MSLTAVKMSEDIWFTCLTHALSTETEEIMGLLLGDIQHSKNGSVTALIWGASPQTRSDRRKDRVETHPEQLAAASAQAE
        M++ AV +  D +  C+TH+LSTE EE+MGL +G++   K   + ++I       RSD+RKDRVE  PEQL+AA+ +A+
Subjt:  MSLTAVKMSEDIWFTCLTHALSTETEEIMGLLLGDIQHSKNGSVTALIWGASPQTRSDRRKDRVETHPEQLAAASAQAE

Arabidopsis top hitse value%identityAlignment
AT1G80210.1 Mov34/MPN/PAD-1 family protein2.3e-3182.5Show/hide
Query:  MSLTAVKMSEDIWFTCLTHALSTETEEIMGLLLGDIQHSKN-GSVTALIWGASPQTRSDRRKDRVETHPEQLAAASAQAE
        MSLT V MSED+W TCLTHALSTETEEIMGLLLGDI++SK+ GS TA+IWGASPQ+RSDR+KDRVET+PEQLAAASAQA+
Subjt:  MSLTAVKMSEDIWFTCLTHALSTETEEIMGLLLGDIQHSKN-GSVTALIWGASPQTRSDRRKDRVETHPEQLAAASAQAE

AT1G80210.2 Mov34/MPN/PAD-1 family protein2.3e-3182.5Show/hide
Query:  MSLTAVKMSEDIWFTCLTHALSTETEEIMGLLLGDIQHSKN-GSVTALIWGASPQTRSDRRKDRVETHPEQLAAASAQAE
        MSLT V MSED+W TCLTHALSTETEEIMGLLLGDI++SK+ GS TA+IWGASPQ+RSDR+KDRVET+PEQLAAASAQA+
Subjt:  MSLTAVKMSEDIWFTCLTHALSTETEEIMGLLLGDIQHSKN-GSVTALIWGASPQTRSDRRKDRVETHPEQLAAASAQAE

AT3G06820.2 Mov34/MPN/PAD-1 family protein1.0e-3183.75Show/hide
Query:  MSLTAVKMSEDIWFTCLTHALSTETEEIMGLLLGDIQHSKNG-SVTALIWGASPQTRSDRRKDRVETHPEQLAAASAQAE
        MSLT V MSED+W TCLTHALSTETEEIMGLLLGDI++SKNG S TA+IWGASPQ RSDR+KDRVET+PEQLAAASAQA+
Subjt:  MSLTAVKMSEDIWFTCLTHALSTETEEIMGLLLGDIQHSKNG-SVTALIWGASPQTRSDRRKDRVETHPEQLAAASAQAE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGAGGGAGAAGAAAGAAATGAAATACGGTTGTGGGGATGGTGACGGATTTGGCTATGTCTGCCGCAGGGAGCCTGGGAGAACTTGCAGGGAGAATGGAGAAATGGA
GAAATGGAGATGGAGAAAAAGAACCAAAGTGTTTGGCCCTAGGAGAATCGAAGTTTCTGAAATTCAGAAAGAAAGCGGCGATCCAAAGATGTCTCTGACGGCCGTGAAGA
TGTCCGAAGATATCTGGTTTACTTGTCTCACTCATGCATTGTCCACCGAGACTGAAGAAATCATGGGGCTTCTCCTTGGCGATATTCAGCATTCAAAAAATGGTAGTGTA
ACTGCACTAATTTGGGGAGCATCGCCTCAGACACGGTCTGACAGAAGGAAGGACCGGGTGGAGACTCATCCTGAACAATTGGCTGCTGCATCTGCCCAGGCTGAGATATC
CTTTGCTCCTTTTAGCTTTGGGAAATTCTTCTTCTTCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAGAGGGAGAAGAAAGAAATGAAATACGGTTGTGGGGATGGTGACGGATTTGGCTATGTCTGCCGCAGGGAGCCTGGGAGAACTTGCAGGGAGAATGGAGAAATGGA
GAAATGGAGATGGAGAAAAAGAACCAAAGTGTTTGGCCCTAGGAGAATCGAAGTTTCTGAAATTCAGAAAGAAAGCGGCGATCCAAAGATGTCTCTGACGGCCGTGAAGA
TGTCCGAAGATATCTGGTTTACTTGTCTCACTCATGCATTGTCCACCGAGACTGAAGAAATCATGGGGCTTCTCCTTGGCGATATTCAGCATTCAAAAAATGGTAGTGTA
ACTGCACTAATTTGGGGAGCATCGCCTCAGACACGGTCTGACAGAAGGAAGGACCGGGTGGAGACTCATCCTGAACAATTGGCTGCTGCATCTGCCCAGGCTGAGATATC
CTTTGCTCCTTTTAGCTTTGGGAAATTCTTCTTCTTCTAG
Protein sequenceShow/hide protein sequence
MEREKKEMKYGCGDGDGFGYVCRREPGRTCRENGEMEKWRWRKRTKVFGPRRIEVSEIQKESGDPKMSLTAVKMSEDIWFTCLTHALSTETEEIMGLLLGDIQHSKNGSV
TALIWGASPQTRSDRRKDRVETHPEQLAAASAQAEISFAPFSFGKFFFF