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HG10002302 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10002302
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionDNA repair protein RadA
Genome locationChr11:5377734..5378123
RNA-Seq ExpressionHG10002302
SyntenyHG10002302
Gene Ontology termsGO:0000725 - recombinational repair (biological process)
GO:0009536 - plastid (cellular component)
GO:0003684 - damaged DNA binding (molecular function)
GO:0005524 - ATP binding (molecular function)
GO:0008094 - DNA-dependent ATPase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7018307.1 radA, partial [Cucurbita argyrosperma subsp. argyrosperma]1.9e-2082.35Show/hide
Query:  VGRMEKRINTVSKLGFKRCVVPKSAENCLGVVELGEMKLIGCRNLKDVINKVFMARDEFGSLH-SFVG
        V RMEKRINTV+KLGFKRCVVPKSAE CLGVVE GEM+LIGCRNLKDVIN VFMARD   S+  SFVG
Subjt:  VGRMEKRINTVSKLGFKRCVVPKSAENCLGVVELGEMKLIGCRNLKDVINKVFMARDEFGSLH-SFVG

XP_022153628.1 uncharacterized protein LOC111021088 [Momordica charantia]1.2e-2286.36Show/hide
Query:  VGRMEKRINTVSKLGFKRCVVPKSAENCLGVVELGEMKLIGCRNLKDVINKVFMARDEFGSLHSFV
        V RMEKRINTV KLGFKRCVVPKSAENCLGVVELG+MKLIGCRNLKDV+N VFMARDE    HSFV
Subjt:  VGRMEKRINTVSKLGFKRCVVPKSAENCLGVVELGEMKLIGCRNLKDVINKVFMARDEFGSLHSFV

XP_022956185.1 uncharacterized protein LOC111457955 [Cucurbita moschata]1.9e-2082.35Show/hide
Query:  VGRMEKRINTVSKLGFKRCVVPKSAENCLGVVELGEMKLIGCRNLKDVINKVFMARDEFGSLH-SFVG
        V RMEKRINTV+KLGFKRCVVPKSAE CLGVVE GEM+LIGCRNLKDVIN VFMARD   S+  SFVG
Subjt:  VGRMEKRINTVSKLGFKRCVVPKSAENCLGVVELGEMKLIGCRNLKDVINKVFMARDEFGSLH-SFVG

XP_022980476.1 uncharacterized protein LOC111479856 [Cucurbita maxima]3.5e-2285.07Show/hide
Query:  VGRMEKRINTVSKLGFKRCVVPKSAENCLGVVELGEMKLIGCRNLKDVINKVFMARDEFGSLHSFVG
        V RMEKRINTVSKLGFKRCVVPKSAE CLGVVELGE +LIGCRNLKDVIN VFMARD   S+ SFVG
Subjt:  VGRMEKRINTVSKLGFKRCVVPKSAENCLGVVELGEMKLIGCRNLKDVINKVFMARDEFGSLHSFVG

XP_023527681.1 uncharacterized protein LOC111790828 [Cucurbita pepo subsp. pepo]3.8e-2182.09Show/hide
Query:  VGRMEKRINTVSKLGFKRCVVPKSAENCLGVVELGEMKLIGCRNLKDVINKVFMARDEFGSLHSFVG
        V RMEKRINTV+KLGFKRCVVPKSAE CLGVVELGE +LIGC NLKDVIN VFMARD   S+ SFVG
Subjt:  VGRMEKRINTVSKLGFKRCVVPKSAENCLGVVELGEMKLIGCRNLKDVINKVFMARDEFGSLHSFVG

TrEMBL top hitse value%identityAlignment
A0A1S3BHQ7 DNA repair protein RadA isoform X21.6e-2089.66Show/hide
Query:  VGRMEKRINTVSKLGFKRCVVPKSAENCLGVVELGEMKLIGCRNLKDVINKVFMARDE
        VGRMEKRINTV+KLGFKRCVVPKSAENCLGVV LG+MKLIGC NLKDVIN VFM RDE
Subjt:  VGRMEKRINTVSKLGFKRCVVPKSAENCLGVVELGEMKLIGCRNLKDVINKVFMARDE

A0A5D3C9C8 DNA repair protein RadA isoform X11.6e-2089.66Show/hide
Query:  VGRMEKRINTVSKLGFKRCVVPKSAENCLGVVELGEMKLIGCRNLKDVINKVFMARDE
        VGRMEKRINTV+KLGFKRCVVPKSAENCLGVV LG+MKLIGC NLKDVIN VFM RDE
Subjt:  VGRMEKRINTVSKLGFKRCVVPKSAENCLGVVELGEMKLIGCRNLKDVINKVFMARDE

A0A6J1DHZ5 uncharacterized protein LOC1110210885.7e-2386.36Show/hide
Query:  VGRMEKRINTVSKLGFKRCVVPKSAENCLGVVELGEMKLIGCRNLKDVINKVFMARDEFGSLHSFV
        V RMEKRINTV KLGFKRCVVPKSAENCLGVVELG+MKLIGCRNLKDV+N VFMARDE    HSFV
Subjt:  VGRMEKRINTVSKLGFKRCVVPKSAENCLGVVELGEMKLIGCRNLKDVINKVFMARDEFGSLHSFV

A0A6J1GX44 uncharacterized protein LOC1114579559.2e-2182.35Show/hide
Query:  VGRMEKRINTVSKLGFKRCVVPKSAENCLGVVELGEMKLIGCRNLKDVINKVFMARDEFGSLH-SFVG
        V RMEKRINTV+KLGFKRCVVPKSAE CLGVVE GEM+LIGCRNLKDVIN VFMARD   S+  SFVG
Subjt:  VGRMEKRINTVSKLGFKRCVVPKSAENCLGVVELGEMKLIGCRNLKDVINKVFMARDEFGSLH-SFVG

A0A6J1ITP4 uncharacterized protein LOC1114798561.7e-2285.07Show/hide
Query:  VGRMEKRINTVSKLGFKRCVVPKSAENCLGVVELGEMKLIGCRNLKDVINKVFMARDEFGSLHSFVG
        V RMEKRINTVSKLGFKRCVVPKSAE CLGVVELGE +LIGCRNLKDVIN VFMARD   S+ SFVG
Subjt:  VGRMEKRINTVSKLGFKRCVVPKSAENCLGVVELGEMKLIGCRNLKDVINKVFMARDEFGSLHSFVG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G50340.1 ATP-dependent peptidases;nucleotide binding;serine-type endopeptidases;DNA helicases;ATP binding;damaged DNA binding;nucleoside-triphosphatases4.1e-1360.38Show/hide
Query:  VGRMEKRINTVSKLGFKRCVVPKSAENCLGVVELGEMKLIGCRNLKDVINKVF
        V RMEKR++TV+KLGF +CVVPKS E  L  + L E+++IGC+NLK++IN VF
Subjt:  VGRMEKRINTVSKLGFKRCVVPKSAENCLGVVELGEMKLIGCRNLKDVINKVF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACATTGCATTCATTGGTGAAATTGGCCTCGGCGGTGGGTAGAATGGAGAAGAGGATCAATACTGTATCCAAATTGGGTTTCAAGAGATGTGTAGTACCCAAATCAGC
TGAAAATTGTTTAGGGGTGGTAGAATTGGGCGAGATGAAGCTCATAGGCTGCAGAAATTTGAAAGATGTTATCAACAAAGTGTTTATGGCAAGAGATGAATTTGGAAGTC
TACACTCTTTTGTTGGGTAA
mRNA sequenceShow/hide mRNA sequence
ATGACATTGCATTCATTGGTGAAATTGGCCTCGGCGGTGGGTAGAATGGAGAAGAGGATCAATACTGTATCCAAATTGGGTTTCAAGAGATGTGTAGTACCCAAATCAGC
TGAAAATTGTTTAGGGGTGGTAGAATTGGGCGAGATGAAGCTCATAGGCTGCAGAAATTTGAAAGATGTTATCAACAAAGTGTTTATGGCAAGAGATGAATTTGGAAGTC
TACACTCTTTTGTTGGGTAA
Protein sequenceShow/hide protein sequence
MTLHSLVKLASAVGRMEKRINTVSKLGFKRCVVPKSAENCLGVVELGEMKLIGCRNLKDVINKVFMARDEFGSLHSFVG