; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10002306 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10002306
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionMediator of RNA polymerase II transcription subunit 6
Genome locationChr11:5405733..5408654
RNA-Seq ExpressionHG10002306
SyntenyHG10002306
Gene Ontology termsGO:0006357 - regulation of transcription by RNA polymerase II (biological process)
GO:0045893 - positive regulation of transcription, DNA-templated (biological process)
GO:0016592 - mediator complex (cellular component)
GO:0070847 - core mediator complex (cellular component)
GO:0003713 - transcription coactivator activity (molecular function)
InterPro domainsIPR007018 - Mediator complex, subunit Med6
IPR016820 - Mediator complex, subunit Med6, metazoa/plant
IPR038566 - Mediator complex, subunit Med6 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004149176.2 mediator of RNA polymerase II transcription subunit 6 [Cucumis sativus]6.5e-13998.43Show/hide
Query:  MATPPPPTAPPGIGNFEGGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVME
        MATPPPPTAPPG GNFEGGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVME
Subjt:  MATPPPPTAPPGIGNFEGGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVME

Query:  PHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPAKETINFKEVKRVDHILASLQ
        PHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLC+VFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPAKETINFKEVKRVDHILASLQ
Subjt:  PHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPAKETINFKEVKRVDHILASLQ

Query:  RKLPPAPPPPPFPEGYAPAPTAETEKGPENQQGESQQPPADPIIDQGPAKRMKF
        RKLPPAPPPPPFPEGYAPA TAETEKGPENQQGESQQP ADPIIDQGPAKRMKF
Subjt:  RKLPPAPPPPPFPEGYAPAPTAETEKGPENQQGESQQPPADPIIDQGPAKRMKF

XP_008447572.1 PREDICTED: mediator of RNA polymerase II transcription subunit 6 isoform X1 [Cucumis melo]1.9e-13898.04Show/hide
Query:  MATPPPP-TAPPGIGNFEGGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVM
        MATPPPP TAPPG GNFEGGP+PAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVM
Subjt:  MATPPPP-TAPPGIGNFEGGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVM

Query:  EPHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPAKETINFKEVKRVDHILASL
        EPHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPAKETINFKEVKRVDHILASL
Subjt:  EPHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPAKETINFKEVKRVDHILASL

Query:  QRKLPPAPPPPPFPEGYAPAPTAETEKGPENQQGESQQPPADPIIDQGPAKRMKF
        QRKLPPAPPPPPFPEGYAPAPTA+TEKGPENQQGESQQP ADPIIDQGPAKRMKF
Subjt:  QRKLPPAPPPPPFPEGYAPAPTAETEKGPENQQGESQQPPADPIIDQGPAKRMKF

XP_022148297.1 mediator of RNA polymerase II transcription subunit 6 [Momordica charantia]9.7e-13595.67Show/hide
Query:  MATPPPPTAPPGIGNFEGGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVME
        MATPPPP APPGI NFEGGP PAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTG EYMLNEVME
Subjt:  MATPPPPTAPPGIGNFEGGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVME

Query:  PHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPAKETINFKEVKRVDHILASLQ
        PHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKP KETINFKEVKRVDHILASLQ
Subjt:  PHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPAKETINFKEVKRVDHILASLQ

Query:  RKLPPAPPPPPFPEGYAPAPTAETEKGPENQQGESQQPPADPIIDQGPAKRMKF
        RKLPPAPPPPPFPEGY PAPTAE EKGPENQ  E QQP ADPIIDQGPAKRMKF
Subjt:  RKLPPAPPPPPFPEGYAPAPTAETEKGPENQQGESQQPPADPIIDQGPAKRMKF

XP_023524903.1 mediator of RNA polymerase II transcription subunit 6 [Cucurbita pepo subsp. pepo]8.5e-13194.09Show/hide
Query:  MATPPPPTAPPGIGNFEGGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVME
        MATPP    PPGIGNFEGGP PAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVME
Subjt:  MATPPPPTAPPGIGNFEGGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVME

Query:  PHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPAKETINFKEVKRVDHILASLQ
        PHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPAK TI+FKEVKRVD ILASLQ
Subjt:  PHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPAKETINFKEVKRVDHILASLQ

Query:  RKLPPAPPPPPFPEGYAPAPTAETEKGPENQQGESQQPPADPIIDQGPAKRMKF
        RKLPPAPPPPPFPEGY PAP +E EKGPE+QQGE QQP ADPIIDQGPAKRMKF
Subjt:  RKLPPAPPPPPFPEGYAPAPTAETEKGPENQQGESQQPPADPIIDQGPAKRMKF

XP_038896808.1 mediator of RNA polymerase II transcription subunit 6 [Benincasa hispida]5.9e-14098.82Show/hide
Query:  MATPPPPTAPPGIGNFEGGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVME
        MATPPPPTAPPGIGNFEGGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVME
Subjt:  MATPPPPTAPPGIGNFEGGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVME

Query:  PHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPAKETINFKEVKRVDHILASLQ
        PHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENE EEVKPAKETINFKEVKRVDHILASLQ
Subjt:  PHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPAKETINFKEVKRVDHILASLQ

Query:  RKLPPAPPPPPFPEGYAPAPTAETEKGPENQQGESQQPPADPIIDQGPAKRMKF
        RKLPPAPPPPPFPEGYAPAPTAETEKGPEN  GESQQPPADPIIDQGPAKRMKF
Subjt:  RKLPPAPPPPPFPEGYAPAPTAETEKGPENQQGESQQPPADPIIDQGPAKRMKF

TrEMBL top hitse value%identityAlignment
A0A0A0L8C2 Mediator of RNA polymerase II transcription subunit 63.2e-13998.43Show/hide
Query:  MATPPPPTAPPGIGNFEGGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVME
        MATPPPPTAPPG GNFEGGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVME
Subjt:  MATPPPPTAPPGIGNFEGGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVME

Query:  PHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPAKETINFKEVKRVDHILASLQ
        PHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLC+VFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPAKETINFKEVKRVDHILASLQ
Subjt:  PHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPAKETINFKEVKRVDHILASLQ

Query:  RKLPPAPPPPPFPEGYAPAPTAETEKGPENQQGESQQPPADPIIDQGPAKRMKF
        RKLPPAPPPPPFPEGYAPA TAETEKGPENQQGESQQP ADPIIDQGPAKRMKF
Subjt:  RKLPPAPPPPPFPEGYAPAPTAETEKGPENQQGESQQPPADPIIDQGPAKRMKF

A0A1S3BHR9 Mediator of RNA polymerase II transcription subunit 69.2e-13998.04Show/hide
Query:  MATPPPP-TAPPGIGNFEGGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVM
        MATPPPP TAPPG GNFEGGP+PAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVM
Subjt:  MATPPPP-TAPPGIGNFEGGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVM

Query:  EPHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPAKETINFKEVKRVDHILASL
        EPHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPAKETINFKEVKRVDHILASL
Subjt:  EPHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPAKETINFKEVKRVDHILASL

Query:  QRKLPPAPPPPPFPEGYAPAPTAETEKGPENQQGESQQPPADPIIDQGPAKRMKF
        QRKLPPAPPPPPFPEGYAPAPTA+TEKGPENQQGESQQP ADPIIDQGPAKRMKF
Subjt:  QRKLPPAPPPPPFPEGYAPAPTAETEKGPENQQGESQQPPADPIIDQGPAKRMKF

A0A5D3CDR8 Mediator of RNA polymerase II transcription subunit 69.2e-13998.04Show/hide
Query:  MATPPPP-TAPPGIGNFEGGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVM
        MATPPPP TAPPG GNFEGGP+PAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVM
Subjt:  MATPPPP-TAPPGIGNFEGGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVM

Query:  EPHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPAKETINFKEVKRVDHILASL
        EPHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPAKETINFKEVKRVDHILASL
Subjt:  EPHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPAKETINFKEVKRVDHILASL

Query:  QRKLPPAPPPPPFPEGYAPAPTAETEKGPENQQGESQQPPADPIIDQGPAKRMKF
        QRKLPPAPPPPPFPEGYAPAPTA+TEKGPENQQGESQQP ADPIIDQGPAKRMKF
Subjt:  QRKLPPAPPPPPFPEGYAPAPTAETEKGPENQQGESQQPPADPIIDQGPAKRMKF

A0A6J1D4P7 Mediator of RNA polymerase II transcription subunit 64.7e-13595.67Show/hide
Query:  MATPPPPTAPPGIGNFEGGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVME
        MATPPPP APPGI NFEGGP PAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTG EYMLNEVME
Subjt:  MATPPPPTAPPGIGNFEGGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVME

Query:  PHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPAKETINFKEVKRVDHILASLQ
        PHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKP KETINFKEVKRVDHILASLQ
Subjt:  PHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPAKETINFKEVKRVDHILASLQ

Query:  RKLPPAPPPPPFPEGYAPAPTAETEKGPENQQGESQQPPADPIIDQGPAKRMKF
        RKLPPAPPPPPFPEGY PAPTAE EKGPENQ  E QQP ADPIIDQGPAKRMKF
Subjt:  RKLPPAPPPPPFPEGYAPAPTAETEKGPENQQGESQQPPADPIIDQGPAKRMKF

A0A6J1G911 Mediator of RNA polymerase II transcription subunit 69.2e-13194.09Show/hide
Query:  MATPPPPTAPPGIGNFEGGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVME
        MATPP    PPGIGNFEGGP  AAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVME
Subjt:  MATPPPPTAPPGIGNFEGGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVME

Query:  PHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPAKETINFKEVKRVDHILASLQ
        PHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPAKETI+FKEVKRVD ILASLQ
Subjt:  PHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPAKETINFKEVKRVDHILASLQ

Query:  RKLPPAPPPPPFPEGYAPAPTAETEKGPENQQGESQQPPADPIIDQGPAKRMKF
        RKLPPAPPPPPFPEGY PAP +E EKGPE+QQGE QQP ADPIIDQGPAKRMKF
Subjt:  RKLPPAPPPPPFPEGYAPAPTAETEKGPENQQGESQQPPADPIIDQGPAKRMKF

SwissProt top hitse value%identityAlignment
F4IXJ7 Mediator of RNA polymerase II transcription subunit 65.1e-8662.09Show/hide
Query:  LPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPM
        +P   QPPGTDMTGI FRDQLW+N+YPLDRN +FDYFALSPFYD TCNNE LR RSIHPLDLS LSKMTG+EYML +  EP+LFVFRKQKRDGPEKVTPM
Subjt:  LPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPM

Query:  LTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKI-------------------------------------GY------VDSENESEEV
        LTYYILDGSIYQAPQLC+VFAARVSR +Y ISKAFT A+SKLE I                                     G+       +++NE  E 
Subjt:  LTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKI-------------------------------------GY------VDSENESEEV

Query:  KPAKETINFKEVKRVDHILASLQRKLPPAPPPPPFPEGYAPAPTAETEKGPENQQGESQQPPADPIIDQGPAKRMKF
        KPA ET++ KE+KRVD IL SL RKL P PPPPPFPEGY        ++    Q GESQ P  DPIIDQGPAKRMKF
Subjt:  KPAKETINFKEVKRVDHILASLQRKLPPAPPPPPFPEGYAPAPTAETEKGPENQQGESQQPPADPIIDQGPAKRMKF

O75586 Mediator of RNA polymerase II transcription subunit 61.8e-2236.97Show/hide
Query:  DMTGICFRDQLWLNTYPLDRNLVFDYFA--LSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPMLTYYILDG
        ++ GI + D  W+    L+   V DYF+   +PFYD TCNNE ++M+    L L  L++M GIEY+L    EP LF+ RKQ+R  P +V P+  YYI+ G
Subjt:  DMTGICFRDQLWLNTYPLDRNLVFDYFA--LSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPMLTYYILDG

Query:  SIYQAPQLCNVFAARVSRALYYISKAFTTASSKLE---KIGY---VDSENESEEVKP----AKETINFKEVKRVDHILASLQRKLPPAPPPPPFPEGYAP
         IYQAP L +V  +RV  A++ I  AF  A S        GY        E ++V+P     +E  +  + +RVD +L  L++K P  P       G  P
Subjt:  SIYQAPQLCNVFAARVSRALYYISKAFTTASSKLE---KIGY---VDSENESEEVKP----AKETINFKEVKRVDHILASLQRKLPPAPPPPPFPEGYAP

Query:  APTAETEKGPE
         P  +T+K  E
Subjt:  APTAETEKGPE

Q54PN3 Putative mediator of RNA polymerase II transcription subunit 66.3e-2839.79Show/hide
Query:  DMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPMLTYYILDGSI
        D+T + +RD LWL  YPL+   +  YF+ S FYD  CNNEQL+M+    LDLS L  M G+EY L + +EP  F+  KQ R  P  V     YY+++G+I
Subjt:  DMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPMLTYYILDGSI

Query:  YQAPQLCNVFAARVSRALYYISKAFTTASSKLE---KIGY---VDSENESEEVK-PAKETINFKEVKRVDHILASLQRKLPPAPPPPPFPE
        YQAP+L  VF +RVS+++ ++S+AF + SS +      GY   +D  N+ E+ K  A      ++ KR+D ++ SL  K P    P   P+
Subjt:  YQAPQLCNVFAARVSRALYYISKAFTTASSKLE---KIGY---VDSENESEEVK-PAKETINFKEVKRVDHILASLQRKLPPAPPPPPFPE

Q5RD94 Mediator of RNA polymerase II transcription subunit 61.8e-2236.97Show/hide
Query:  DMTGICFRDQLWLNTYPLDRNLVFDYFA--LSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPMLTYYILDG
        ++ GI + D  W+    L+   V DYF+   +PFYD TCNNE ++M+    L L  L++M GIEY+L    EP LF+ RKQ+R  P +V P+  YYI+ G
Subjt:  DMTGICFRDQLWLNTYPLDRNLVFDYFA--LSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPMLTYYILDG

Query:  SIYQAPQLCNVFAARVSRALYYISKAFTTASSKLE---KIGY---VDSENESEEVKP----AKETINFKEVKRVDHILASLQRKLPPAPPPPPFPEGYAP
         IYQAP L +V  +RV  A++ I  AF  A S        GY        E ++V+P     +E  +  + +RVD +L  L++K P  P       G  P
Subjt:  SIYQAPQLCNVFAARVSRALYYISKAFTTASSKLE---KIGY---VDSENESEEVKP----AKETINFKEVKRVDHILASLQRKLPPAPPPPPFPEGYAP

Query:  APTAETEKGPE
         P  +T+K  E
Subjt:  APTAETEKGPE

Q921D4 Mediator of RNA polymerase II transcription subunit 68.0e-2335.68Show/hide
Query:  DMTGICFRDQLWLNTYPLDRNLVFDYFA--LSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPMLTYYILDG
        ++ GI + D  W+    L+   V DYF+   +PFYD TCNNE ++M+    L L  L++M GIEY+L    EP LF+ RKQ+R  P +V P+  YYI+ G
Subjt:  DMTGICFRDQLWLNTYPLDRNLVFDYFA--LSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPMLTYYILDG

Query:  SIYQAPQLCNVFAARVSRALYYISKAFTTASSKLE---KIGY---VDSENESEEVKP----AKETINFKEVKRVDHILASLQRKLPPAPPPPPFPEGYAP
         IYQAP L +V  +RV  A++ I  AF  A S        GY        E E+VKP     +E  +  + +RVD +L  L++K PP        E   P
Subjt:  SIYQAPQLCNVFAARVSRALYYISKAFTTASSKLE---KIGY---VDSENESEEVKP----AKETINFKEVKRVDHILASLQRKLPPAPPPPPFPEGYAP

Query:  APTAETEKGPENQQGESQQPPADPIIDQ------GPAKRMK
           A+ E  P  +  +S++  +   I Q       P KRM+
Subjt:  APTAETEKGPENQQGESQQPPADPIIDQ------GPAKRMK

Arabidopsis top hitse value%identityAlignment
AT3G21350.1 RNA polymerase transcriptional regulation mediator-related1.2e-9373.73Show/hide
Query:  LPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPM
        +P   QPPGTDMTGI FRDQLW+N+YPLDRN +FDYFALSPFYD TCNNE LR RSIHPLDLS LSKMTG+EYML +  EP+LFVFRKQKRDGPEKVTPM
Subjt:  LPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPM

Query:  LTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESE--EVKPAKETINFKEVKRVDHILASLQRKLPPAPPPPPFPEGYAP
        LTYYILDGSIYQAPQLC+VFAARVSR +Y ISKAFT A+SKLE I  VD+EN++E  E KPA ET++ KE+KRVD IL SL RKL P PPPPPFPEGY  
Subjt:  LTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESE--EVKPAKETINFKEVKRVDHILASLQRKLPPAPPPPPFPEGYAP

Query:  APTAETEKGPENQQGESQQPPADPIIDQGPAKRMKF
              ++    Q GESQ P  DPIIDQGPAKRMKF
Subjt:  APTAETEKGPENQQGESQQPPADPIIDQGPAKRMKF

AT3G21350.2 RNA polymerase transcriptional regulation mediator-related3.6e-8762.09Show/hide
Query:  LPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPM
        +P   QPPGTDMTGI FRDQLW+N+YPLDRN +FDYFALSPFYD TCNNE LR RSIHPLDLS LSKMTG+EYML +  EP+LFVFRKQKRDGPEKVTPM
Subjt:  LPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPM

Query:  LTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKI-------------------------------------GY------VDSENESEEV
        LTYYILDGSIYQAPQLC+VFAARVSR +Y ISKAFT A+SKLE I                                     G+       +++NE  E 
Subjt:  LTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKI-------------------------------------GY------VDSENESEEV

Query:  KPAKETINFKEVKRVDHILASLQRKLPPAPPPPPFPEGYAPAPTAETEKGPENQQGESQQPPADPIIDQGPAKRMKF
        KPA ET++ KE+KRVD IL SL RKL P PPPPPFPEGY        ++    Q GESQ P  DPIIDQGPAKRMKF
Subjt:  KPAKETINFKEVKRVDHILASLQRKLPPAPPPPPFPEGYAPAPTAETEKGPENQQGESQQPPADPIIDQGPAKRMKF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAACTCCACCACCACCGACGGCCCCGCCAGGGATCGGGAATTTTGAGGGGGGGCCGCTGCCGGCAGCGCCTCAGCCTCCAGGCACGGACATGACTGGAATTTGCTT
TAGAGACCAGCTCTGGCTCAATACTTACCCACTTGATCGAAACTTGGTTTTCGATTATTTCGCCTTGTCCCCTTTCTACGACTGGACTTGTAACAACGAACAACTCAGAA
TGCGCTCCATTCACCCCCTCGATCTCTCTCAACTCTCAAAAATGACAGGTATAGAGTACATGCTGAATGAAGTTATGGAGCCTCACCTTTTCGTTTTCAGAAAGCAAAAG
AGGGATGGCCCTGAGAAAGTCACACCGATGCTGACTTATTATATCTTGGATGGTTCAATTTACCAGGCGCCTCAGCTTTGCAATGTTTTTGCTGCCCGAGTTAGTCGGGC
ACTATATTACATATCAAAGGCCTTTACCACTGCTTCCTCAAAGTTGGAGAAGATAGGATATGTTGATTCTGAAAATGAGAGTGAAGAAGTAAAACCTGCAAAAGAAACCA
TTAACTTTAAGGAAGTAAAGCGAGTTGATCATATTCTTGCATCCTTACAGCGCAAGCTGCCACCTGCCCCACCACCCCCACCATTTCCTGAAGGCTATGCTCCTGCTCCC
ACAGCAGAAACAGAGAAAGGCCCTGAAAATCAACAAGGAGAGTCACAACAGCCTCCAGCAGATCCGATTATCGATCAGGGTCCAGCTAAAAGGATGAAATTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCAACTCCACCACCACCGACGGCCCCGCCAGGGATCGGGAATTTTGAGGGGGGGCCGCTGCCGGCAGCGCCTCAGCCTCCAGGCACGGACATGACTGGAATTTGCTT
TAGAGACCAGCTCTGGCTCAATACTTACCCACTTGATCGAAACTTGGTTTTCGATTATTTCGCCTTGTCCCCTTTCTACGACTGGACTTGTAACAACGAACAACTCAGAA
TGCGCTCCATTCACCCCCTCGATCTCTCTCAACTCTCAAAAATGACAGGTATAGAGTACATGCTGAATGAAGTTATGGAGCCTCACCTTTTCGTTTTCAGAAAGCAAAAG
AGGGATGGCCCTGAGAAAGTCACACCGATGCTGACTTATTATATCTTGGATGGTTCAATTTACCAGGCGCCTCAGCTTTGCAATGTTTTTGCTGCCCGAGTTAGTCGGGC
ACTATATTACATATCAAAGGCCTTTACCACTGCTTCCTCAAAGTTGGAGAAGATAGGATATGTTGATTCTGAAAATGAGAGTGAAGAAGTAAAACCTGCAAAAGAAACCA
TTAACTTTAAGGAAGTAAAGCGAGTTGATCATATTCTTGCATCCTTACAGCGCAAGCTGCCACCTGCCCCACCACCCCCACCATTTCCTGAAGGCTATGCTCCTGCTCCC
ACAGCAGAAACAGAGAAAGGCCCTGAAAATCAACAAGGAGAGTCACAACAGCCTCCAGCAGATCCGATTATCGATCAGGGTCCAGCTAAAAGGATGAAATTTTGA
Protein sequenceShow/hide protein sequence
MATPPPPTAPPGIGNFEGGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQK
RDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPAKETINFKEVKRVDHILASLQRKLPPAPPPPPFPEGYAPAP
TAETEKGPENQQGESQQPPADPIIDQGPAKRMKF