CuGenDBv2

Gene ID	HG10002385
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	40S ribosomal protein S3
Genome location	Chr11:6255360..6258411
RNA-Seq Expression	HG10002385
Synteny	HG10002385
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0005737 - cytoplasm (cellular component) GO:0015935 - small ribosomal subunit (cellular component) GO:0003723 - RNA binding (molecular function) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	IPR009019 - K homology domain superfamily, prokaryotic type IPR015946 - K homology domain-like, alpha/beta

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0061472.1 40S ribosomal protein S3-3 [Cucumis melo var. makuwa]

2.0e-17

87.93

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Query:  QLTRATIVFVADGVFFAEFNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG
        +L   + VFVADGVFFAE NEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG
Subjt:  QLTRATIVFVADGVFFAEFNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG

KAF8406838.1 hypothetical protein HHK36_005959 [Tetracentron sinense]

3.4e-17

94.23

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Query:  IVFVADGVFFAEFNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG
        ++FVADGVFFAE NEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG
Subjt:  IVFVADGVFFAEFNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG

KAG0499681.1 hypothetical protein HPP92_004372 [Vanilla planifolia]

5.3e-18

77.14

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Query:  TIIDNYHQLTRATIV-----FVADGVFFAEFNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG
        TI+ N+     AT++     FVADGVFFAE NEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG
Subjt:  TIIDNYHQLTRATIV-----FVADGVFFAEFNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG

KAG1342657.1 putative peroxisome biogenesis factor 10 [Cocos nucifera]

2.0e-17

96.15

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Query:  IVFVADGVFFAEFNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG
        +VFVADGVFFAE NEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG
Subjt:  IVFVADGVFFAEFNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG

PPR92982.1 hypothetical protein GOBAR_AA27698 [Gossypium barbadense]

4.1e-18

92.73

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Query:  RATIVFVADGVFFAEFNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG
        R +IVFVADGVF+AE NEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG
Subjt:  RATIVFVADGVFFAEFNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG

TrEMBL top hits

e value

%identity

Alignment

A0A1D1Y5C9 40S ribosomal protein S3-1 (Fragment)

1.7e-17

71.6

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Query:  PFTSCRRRP--TNSTTTIIDNYHQLTRATIVFVADGVFFAEFNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG
        P  SC RR   T S +  +   H   R    FVADGVFFAE NEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG
Subjt:  PFTSCRRRP--TNSTTTIIDNYHQLTRATIVFVADGVFFAEFNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG

A0A1D1Z181 40S ribosomal protein S3-3 (Fragment)

1.7e-17

71.6

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Query:  PFTSCRRRP--TNSTTTIIDNYHQLTRATIVFVADGVFFAEFNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG
        P  SC RR   T S +  +   H   R    FVADGVFFAE NEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG
Subjt:  PFTSCRRRP--TNSTTTIIDNYHQLTRATIVFVADGVFFAEFNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG

A0A2P5WPG9 KH type-2 domain-containing protein

2.0e-18

92.73

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Query:  RATIVFVADGVFFAEFNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG
        R +IVFVADGVF+AE NEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG
Subjt:  RATIVFVADGVFFAEFNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG

A0A4D9A6X3 30S ribosomal protein S3, chloroplastic

7.5e-18

89.47

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Query:  LTRATIVFVADGVFFAEFNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG
        L  A + FVADGVFFAE NEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG
Subjt:  LTRATIVFVADGVFFAEFNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG

A0A5A7UZY3 40S ribosomal protein S3-2-like

9.7e-18

87.93

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Query:  QLTRATIVFVADGVFFAEFNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG
        +L   + VFVADGVFFAE NEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG
Subjt:  QLTRATIVFVADGVFFAEFNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG

SwissProt top hits

e value

%identity

Alignment

P02350 40S ribosomal protein S3-A

1.4e-16

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Query:  FVADGVFFAEFNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG
        FVADG+F AE NE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLG
Subjt:  FVADGVFFAEFNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG

P79891 40S ribosomal protein S3

1.4e-16

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Query:  FVADGVFFAEFNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG
        FVADG+F AE NE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLG
Subjt:  FVADGVFFAEFNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG

Q9FJA6 40S ribosomal protein S3-3

1.7e-19

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Query:  FVADGVFFAEFNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG
        FVADGVF+AE NEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG
Subjt:  FVADGVFFAEFNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG

Q9M339 40S ribosomal protein S3-2

1.7e-19

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Query:  FVADGVFFAEFNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG
        FVADGVF+AE NEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG
Subjt:  FVADGVFFAEFNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG

Q9SIP7 40S ribosomal protein S3-1

1.7e-19

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Query:  FVADGVFFAEFNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG
        FVADGVF+AE NEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG
Subjt:  FVADGVFFAEFNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG

Arabidopsis top hits

e value

%identity

Alignment

AT2G31610.1 Ribosomal protein S3 family protein

1.2e-20

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Query:  FVADGVFFAEFNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG
        FVADGVF+AE NEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG
Subjt:  FVADGVFFAEFNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG

AT3G53870.1 Ribosomal protein S3 family protein

1.2e-20

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Query:  FVADGVFFAEFNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG
        FVADGVF+AE NEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG
Subjt:  FVADGVFFAEFNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG

AT5G35530.1 Ribosomal protein S3 family protein

1.2e-20

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Query:  FVADGVFFAEFNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG
        FVADGVF+AE NEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG
Subjt:  FVADGVFFAEFNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG

Sequences

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CDS sequence

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ATGGCTCCCTTCACTAGTTGTCGTCGTCGACCAACTAATTCGACAACAACCATTATCGACAACTATCACCAGCTCACTCGAGCAACAATCGTTTTCGTCGCTGATGGAGT
TTTCTTCGCTGAGTTTAACGAGGTGCTGACCAGAGAGCTCGCTGAGGATGGTTACTCCGGCGTCGAGGTTAGGGTTACGCCAATGCGTACTGAGATTATAATCAGGGCAA
CACGAACACAAAATGTTCTAGGTTAG

mRNA sequence

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Protein sequence

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MAPFTSCRRRPTNSTTTIIDNYHQLTRATIVFVADGVFFAEFNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG

HG10002385 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome