; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10002430 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10002430
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Descriptionoligouridylate-binding protein 1B-like
Genome locationChr11:6684224..6686322
RNA-Seq ExpressionHG10002430
SyntenyHG10002430
Gene Ontology termsGO:0003729 - mRNA binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0053515.1 oligouridylate-binding protein 1B-like [Cucumis melo var. makuwa]2.1e-4191.84Show/hide
Query:  RPQQCSWGSKPTPPGTTSNPLPLPAVGSTPGLSATDLLAYERQLAISKMGGVHAALMHPQGHLPLKQAPMGMGAAAASQALYDGGFQNIAAQQLMYYQ
        R  +CSWGSKPTPPGTTSNPLPLPAV STPGLSATDLLAYERQLAI+KMGGVHAALMHPQG  P+KQAPMGMGAAAASQALYDGGFQNIAAQQLMYYQ
Subjt:  RPQQCSWGSKPTPPGTTSNPLPLPAVGSTPGLSATDLLAYERQLAISKMGGVHAALMHPQGHLPLKQAPMGMGAAAASQALYDGGFQNIAAQQLMYYQ

XP_008460320.1 PREDICTED: oligouridylate-binding protein 1B-like [Cucumis melo]2.1e-4191.84Show/hide
Query:  RPQQCSWGSKPTPPGTTSNPLPLPAVGSTPGLSATDLLAYERQLAISKMGGVHAALMHPQGHLPLKQAPMGMGAAAASQALYDGGFQNIAAQQLMYYQ
        R  +CSWGSKPTPPGTTSNPLPLPAV STPGLSATDLLAYERQLAI+KMGGVHAALMHPQG  P+KQAPMGMGAAAASQALYDGGFQNIAAQQLMYYQ
Subjt:  RPQQCSWGSKPTPPGTTSNPLPLPAVGSTPGLSATDLLAYERQLAISKMGGVHAALMHPQGHLPLKQAPMGMGAAAASQALYDGGFQNIAAQQLMYYQ

XP_022148191.1 oligouridylate-binding protein 1B-like [Momordica charantia]2.7e-4189.8Show/hide
Query:  RPQQCSWGSKPTPPGTTSNPLPLPAVGSTPGLSATDLLAYERQLAISKMGGVHAALMHPQGHLPLKQAPMGMGAAAASQALYDGGFQNIAAQQLMYYQ
        R  +CSWG+KPTPPGT SNPLPLPA+ STPGLSATDLLAYERQLAI+KMGGVHAALMHPQGH PLKQAPMG+GAAAASQALYDGGFQNIAAQQLMYYQ
Subjt:  RPQQCSWGSKPTPPGTTSNPLPLPAVGSTPGLSATDLLAYERQLAISKMGGVHAALMHPQGHLPLKQAPMGMGAAAASQALYDGGFQNIAAQQLMYYQ

XP_038896645.1 oligouridylate-binding protein 1B-like isoform X1 [Benincasa hispida]3.2e-4291.84Show/hide
Query:  RPQQCSWGSKPTPPGTTSNPLPLPAVGSTPGLSATDLLAYERQLAISKMGGVHAALMHPQGHLPLKQAPMGMGAAAASQALYDGGFQNIAAQQLMYYQ
        R  +CSWGSKPTPPGT SNPLPLPAV STPGLSATDLLAYERQLAISKMGGVHAALMHPQGH P+KQAPMGMGAAAASQALYDGGFQN+AAQQLMYYQ
Subjt:  RPQQCSWGSKPTPPGTTSNPLPLPAVGSTPGLSATDLLAYERQLAISKMGGVHAALMHPQGHLPLKQAPMGMGAAAASQALYDGGFQNIAAQQLMYYQ

XP_038896649.1 oligouridylate-binding protein 1B-like isoform X2 [Benincasa hispida]3.2e-4291.84Show/hide
Query:  RPQQCSWGSKPTPPGTTSNPLPLPAVGSTPGLSATDLLAYERQLAISKMGGVHAALMHPQGHLPLKQAPMGMGAAAASQALYDGGFQNIAAQQLMYYQ
        R  +CSWGSKPTPPGT SNPLPLPAV STPGLSATDLLAYERQLAISKMGGVHAALMHPQGH P+KQAPMGMGAAAASQALYDGGFQN+AAQQLMYYQ
Subjt:  RPQQCSWGSKPTPPGTTSNPLPLPAVGSTPGLSATDLLAYERQLAISKMGGVHAALMHPQGHLPLKQAPMGMGAAAASQALYDGGFQNIAAQQLMYYQ

TrEMBL top hitse value%identityAlignment
A0A0A0LCP1 Uncharacterized protein3.8e-4190.82Show/hide
Query:  RPQQCSWGSKPTPPGTTSNPLPLPAVGSTPGLSATDLLAYERQLAISKMGGVHAALMHPQGHLPLKQAPMGMGAAAASQALYDGGFQNIAAQQLMYYQ
        R  +CSWGSKPTPPGTTSNPLPLPAV STPGLSA DLLAYERQLAI+KMGGVHAALMHPQG  P+KQAPMGMGAAAASQALYDGGFQNIAAQQLMYYQ
Subjt:  RPQQCSWGSKPTPPGTTSNPLPLPAVGSTPGLSATDLLAYERQLAISKMGGVHAALMHPQGHLPLKQAPMGMGAAAASQALYDGGFQNIAAQQLMYYQ

A0A1S3CDG5 oligouridylate-binding protein 1B-like1.0e-4191.84Show/hide
Query:  RPQQCSWGSKPTPPGTTSNPLPLPAVGSTPGLSATDLLAYERQLAISKMGGVHAALMHPQGHLPLKQAPMGMGAAAASQALYDGGFQNIAAQQLMYYQ
        R  +CSWGSKPTPPGTTSNPLPLPAV STPGLSATDLLAYERQLAI+KMGGVHAALMHPQG  P+KQAPMGMGAAAASQALYDGGFQNIAAQQLMYYQ
Subjt:  RPQQCSWGSKPTPPGTTSNPLPLPAVGSTPGLSATDLLAYERQLAISKMGGVHAALMHPQGHLPLKQAPMGMGAAAASQALYDGGFQNIAAQQLMYYQ

A0A5A7UIJ8 Oligouridylate-binding protein 1B-like1.0e-4191.84Show/hide
Query:  RPQQCSWGSKPTPPGTTSNPLPLPAVGSTPGLSATDLLAYERQLAISKMGGVHAALMHPQGHLPLKQAPMGMGAAAASQALYDGGFQNIAAQQLMYYQ
        R  +CSWGSKPTPPGTTSNPLPLPAV STPGLSATDLLAYERQLAI+KMGGVHAALMHPQG  P+KQAPMGMGAAAASQALYDGGFQNIAAQQLMYYQ
Subjt:  RPQQCSWGSKPTPPGTTSNPLPLPAVGSTPGLSATDLLAYERQLAISKMGGVHAALMHPQGHLPLKQAPMGMGAAAASQALYDGGFQNIAAQQLMYYQ

A0A6J1D4M7 oligouridylate-binding protein 1B-like1.3e-4189.8Show/hide
Query:  RPQQCSWGSKPTPPGTTSNPLPLPAVGSTPGLSATDLLAYERQLAISKMGGVHAALMHPQGHLPLKQAPMGMGAAAASQALYDGGFQNIAAQQLMYYQ
        R  +CSWG+KPTPPGT SNPLPLPA+ STPGLSATDLLAYERQLAI+KMGGVHAALMHPQGH PLKQAPMG+GAAAASQALYDGGFQNIAAQQLMYYQ
Subjt:  RPQQCSWGSKPTPPGTTSNPLPLPAVGSTPGLSATDLLAYERQLAISKMGGVHAALMHPQGHLPLKQAPMGMGAAAASQALYDGGFQNIAAQQLMYYQ

A0A6J1GUK1 oligouridylate-binding protein 1B-like isoform X14.2e-4088.78Show/hide
Query:  RPQQCSWGSKPTPPGTTSNPLPLPAVGSTPGLSATDLLAYERQLAISKMGGVHAALMHPQGHLPLKQAPMGMGAAAASQALYDGGFQNIAAQQLMYYQ
        R  +CSWGSKPTPPGT SNPLPLPA+ STPGLSATDLLAYERQLA+SKMGGVHAALMHPQGH PLKQAPMG+GAAAASQALYDGGFQNI++QQLMYYQ
Subjt:  RPQQCSWGSKPTPPGTTSNPLPLPAVGSTPGLSATDLLAYERQLAISKMGGVHAALMHPQGHLPLKQAPMGMGAAAASQALYDGGFQNIAAQQLMYYQ

SwissProt top hitse value%identityAlignment
Q6YZW2 RNA-binding protein 2082.9e-1443.09Show/hide
Query:  ANYSILLSSVAVVQGEKFRPQQCSWGSKPTPPGTTSNPL--------PLPAVGSTPGLSATDLLAYERQLAISKMGGVHAALMHPQGHLPLKQAPMGMGA
        A  +I +++  VV+G   +P +CSWG+KPTPPGT+S PL        P+P  G   G SA D++AY+RQL +S++     A  H        Q   G+  
Subjt:  ANYSILLSSVAVVQGEKFRPQQCSWGSKPTPPGTTSNPL--------PLPAVGSTPGLSATDLLAYERQLAISKMGGVHAALMHPQGHLPLKQAPMGMGA

Query:  AAASQALYDGGFQNIAAQQLMYY
        AA SQALYDG     +AQQLMYY
Subjt:  AAASQALYDGGFQNIAAQQLMYY

Q9LJH8 Oligouridylate-binding protein 1C2.3e-2768.69Show/hide
Query:  RPQQCSWGSKPTPPGTTSNPLPLPAVGSTPGLSATDLLAYERQLAISKMGGVHAALMHPQGHLPLKQAPMGMGAAAASQALYDGGFQNI-AAQQLMYYQ
        R  +CSWG+KPTPPGT SNPLP PA    PGLSA DLL YERQLA+SKM  V+ ALMH QG  PL+QA  G+ AA A+ A+YDGGFQN+ AAQQLMYYQ
Subjt:  RPQQCSWGSKPTPPGTTSNPLPLPAVGSTPGLSATDLLAYERQLAISKMGGVHAALMHPQGHLPLKQAPMGMGAAAASQALYDGGFQNI-AAQQLMYYQ

Q9LQI9 Oligouridylate-binding protein 1B3.3e-2664.29Show/hide
Query:  RPQQCSWGSKPTPPGTTSNPLPLPAVGSTPGLSATDLLAYERQLAISKMGGVHAALMHPQGHLPLKQAPMGMGAAAASQALYDGGFQNIAAQQLMYYQ
        R  +CSWGSKPTP GT SNPLP PA    PG SA+DLLAYERQLA+SKM G++  + HPQG    KQA   MGA  ++QA+YDGG+QN  AQQLMYYQ
Subjt:  RPQQCSWGSKPTPPGTTSNPLPLPAVGSTPGLSATDLLAYERQLAISKMGGVHAALMHPQGHLPLKQAPMGMGAAAASQALYDGGFQNIAAQQLMYYQ

Q9M427 Oligouridylate-binding protein 16.7e-1950.52Show/hide
Query:  RPQQCSWGSKPTPPGTTSNPLPLPAVGSTPGLSATDLLAYERQLAISKMGGVHAALMHPQGHLPLKQAPMGMGAAAASQALYDGGFQNIAAQQLMYY
        +P +CSWGSKPTPPG++SNPLP PA+G  PGLSA DL AY+RQLA++KM G  A +            P G    A  Q +YDGG+  IA+ Q   Y
Subjt:  RPQQCSWGSKPTPPGTTSNPLPLPAVGSTPGLSATDLLAYERQLAISKMGGVHAALMHPQGHLPLKQAPMGMGAAAASQALYDGGFQNIAAQQLMYY

Q9SYG4 Oligouridylate-binding protein 1A3.4e-2359Show/hide
Query:  RPQQCSWGSKPTPPGTTSNPLPLPAVGSTPGLSATDLLAYERQLAISKMGGVHAALMHPQGHLPLKQAPMGMGAAAASQALYDGGFQNIAA--QQLMYYQ
        R  +CSWG+KPTP GT SNPLP PA  S P LSA DLLAYERQLA++K        MHPQ    L+QA +G+  A  + A+YDGG+QN+AA  QQLMYYQ
Subjt:  RPQQCSWGSKPTPPGTTSNPLPLPAVGSTPGLSATDLLAYERQLAISKMGGVHAALMHPQGHLPLKQAPMGMGAAAASQALYDGGFQNIAA--QQLMYYQ

Arabidopsis top hitse value%identityAlignment
AT1G17370.1 oligouridylate binding protein 1B2.4e-2764.29Show/hide
Query:  RPQQCSWGSKPTPPGTTSNPLPLPAVGSTPGLSATDLLAYERQLAISKMGGVHAALMHPQGHLPLKQAPMGMGAAAASQALYDGGFQNIAAQQLMYYQ
        R  +CSWGSKPTP GT SNPLP PA    PG SA+DLLAYERQLA+SKM G++  + HPQG    KQA   MGA  ++QA+YDGG+QN  AQQLMYYQ
Subjt:  RPQQCSWGSKPTPPGTTSNPLPLPAVGSTPGLSATDLLAYERQLAISKMGGVHAALMHPQGHLPLKQAPMGMGAAAASQALYDGGFQNIAAQQLMYYQ

AT1G17370.2 oligouridylate binding protein 1B2.4e-2764.29Show/hide
Query:  RPQQCSWGSKPTPPGTTSNPLPLPAVGSTPGLSATDLLAYERQLAISKMGGVHAALMHPQGHLPLKQAPMGMGAAAASQALYDGGFQNIAAQQLMYYQ
        R  +CSWGSKPTP GT SNPLP PA    PG SA+DLLAYERQLA+SKM G++  + HPQG    KQA   MGA  ++QA+YDGG+QN  AQQLMYYQ
Subjt:  RPQQCSWGSKPTPPGTTSNPLPLPAVGSTPGLSATDLLAYERQLAISKMGGVHAALMHPQGHLPLKQAPMGMGAAAASQALYDGGFQNIAAQQLMYYQ

AT1G54080.1 oligouridylate-binding protein 1A2.4e-2459Show/hide
Query:  RPQQCSWGSKPTPPGTTSNPLPLPAVGSTPGLSATDLLAYERQLAISKMGGVHAALMHPQGHLPLKQAPMGMGAAAASQALYDGGFQNIAA--QQLMYYQ
        R  +CSWG+KPTP GT SNPLP PA  S P LSA DLLAYERQLA++K        MHPQ    L+QA +G+  A  + A+YDGG+QN+AA  QQLMYYQ
Subjt:  RPQQCSWGSKPTPPGTTSNPLPLPAVGSTPGLSATDLLAYERQLAISKMGGVHAALMHPQGHLPLKQAPMGMGAAAASQALYDGGFQNIAA--QQLMYYQ

AT1G54080.2 oligouridylate-binding protein 1A2.4e-2459Show/hide
Query:  RPQQCSWGSKPTPPGTTSNPLPLPAVGSTPGLSATDLLAYERQLAISKMGGVHAALMHPQGHLPLKQAPMGMGAAAASQALYDGGFQNIAA--QQLMYYQ
        R  +CSWG+KPTP GT SNPLP PA  S P LSA DLLAYERQLA++K        MHPQ    L+QA +G+  A  + A+YDGG+QN+AA  QQLMYYQ
Subjt:  RPQQCSWGSKPTPPGTTSNPLPLPAVGSTPGLSATDLLAYERQLAISKMGGVHAALMHPQGHLPLKQAPMGMGAAAASQALYDGGFQNIAA--QQLMYYQ

AT3G14100.1 RNA-binding (RRM/RBD/RNP motifs) family protein1.6e-2868.69Show/hide
Query:  RPQQCSWGSKPTPPGTTSNPLPLPAVGSTPGLSATDLLAYERQLAISKMGGVHAALMHPQGHLPLKQAPMGMGAAAASQALYDGGFQNI-AAQQLMYYQ
        R  +CSWG+KPTPPGT SNPLP PA    PGLSA DLL YERQLA+SKM  V+ ALMH QG  PL+QA  G+ AA A+ A+YDGGFQN+ AAQQLMYYQ
Subjt:  RPQQCSWGSKPTPPGTTSNPLPLPAVGSTPGLSATDLLAYERQLAISKMGGVHAALMHPQGHLPLKQAPMGMGAAAASQALYDGGFQNI-AAQQLMYYQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGAGAATCCTAGAGTCCTGGCTTACAGCAGTGAATTAATTGAAGACGAAAATCTTGGTCTTGGGTTGCCTTTGAATGCCAACTATTCCATTCTATTATCATCTGT
GGCCGTCGTCCAAGGGGAAAAATTCAGGCCACAACAGTGCTCTTGGGGTAGCAAACCCACACCACCAGGAACAACATCCAATCCACTCCCACTACCTGCAGTTGGTTCCA
CTCCTGGCCTTTCAGCAACTGACCTTTTGGCTTATGAGCGGCAACTAGCAATAAGCAAGATGGGTGGTGTCCATGCAGCACTTATGCACCCTCAGGGGCATCTTCCTTTG
AAACAGGCACCAATGGGAATGGGTGCAGCTGCAGCTAGCCAGGCTTTATATGATGGTGGCTTCCAGAACATTGCAGCACAGCAACTTATGTACTACCAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCTGAGAATCCTAGAGTCCTGGCTTACAGCAGTGAATTAATTGAAGACGAAAATCTTGGTCTTGGGTTGCCTTTGAATGCCAACTATTCCATTCTATTATCATCTGT
GGCCGTCGTCCAAGGGGAAAAATTCAGGCCACAACAGTGCTCTTGGGGTAGCAAACCCACACCACCAGGAACAACATCCAATCCACTCCCACTACCTGCAGTTGGTTCCA
CTCCTGGCCTTTCAGCAACTGACCTTTTGGCTTATGAGCGGCAACTAGCAATAAGCAAGATGGGTGGTGTCCATGCAGCACTTATGCACCCTCAGGGGCATCTTCCTTTG
AAACAGGCACCAATGGGAATGGGTGCAGCTGCAGCTAGCCAGGCTTTATATGATGGTGGCTTCCAGAACATTGCAGCACAGCAACTTATGTACTACCAGTAG
Protein sequenceShow/hide protein sequence
MAENPRVLAYSSELIEDENLGLGLPLNANYSILLSSVAVVQGEKFRPQQCSWGSKPTPPGTTSNPLPLPAVGSTPGLSATDLLAYERQLAISKMGGVHAALMHPQGHLPL
KQAPMGMGAAAASQALYDGGFQNIAAQQLMYYQ