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HG10002435 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10002435
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionU6 snRNA-associated Sm-like protein LSm1
Genome locationChr11:6736783..6737316
RNA-Seq ExpressionHG10002435
SyntenyHG10002435
Gene Ontology termsGO:0016071 - mRNA metabolic process (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6581771.1 Sm-like protein LSM1B, partial [Cucurbita argyrosperma subsp. sororia]5.4e-0946.91Show/hide
Query:  PPPPPSSSSNFP--------------CYRQITGSTVLDSAFERIVVENQYCDNPIGLLVVRAENIILIGESD---PSLPPN
        PPPPP +  + P               Y  +T + V++SAFERIV ENQYCD P+GLLVVR +N + IGE D   P LPP+
Subjt:  PPPPPSSSSNFP--------------CYRQITGSTVLDSAFERIVVENQYCDNPIGLLVVRAENIILIGESD---PSLPPN
XP_022980750.1 sm-like protein LSM1B [Cucurbita maxima]1.0e-0763.27Show/hide
Query:  GSTVLDSAFERIVVENQYCDNPIGLLVVRAENIILIGESD---PSLPPN
        G+ V++SAFERI  ENQYCD P+GLLVVR +N I IGE D   P LPP+
Subjt:  GSTVLDSAFERIVVENQYCDNPIGLLVVRAENIILIGESD---PSLPPN
XP_023527036.1 sm-like protein LSM1B isoform X1 [Cucurbita pepo subsp. pepo]2.0e-0860Show/hide
Query:  CYRQITGSTVLDSAFERIVVENQYCDNPIGLLVVRAENIILIGESD---PSLPPN
        C     G+ V++SAFERIV ENQYCD P+GLLVVR +N I IGE D   P LPP+
Subjt:  CYRQITGSTVLDSAFERIVVENQYCDNPIGLLVVRAENIILIGESD---PSLPPN
XP_023527037.1 sm-like protein LSM1B isoform X2 [Cucurbita pepo subsp. pepo]4.6e-0865.31Show/hide
Query:  GSTVLDSAFERIVVENQYCDNPIGLLVVRAENIILIGESD---PSLPPN
        G+ V++SAFERIV ENQYCD P+GLLVVR +N I IGE D   P LPP+
Subjt:  GSTVLDSAFERIVVENQYCDNPIGLLVVRAENIILIGESD---PSLPPN
XP_038894529.1 sm-like protein LSM1B [Benincasa hispida]1.4e-1286.36Show/hide
Query:  GSTVLDSAFERIVVENQYCDNPIGLLVVRAENIILIGESDPSLP
        G+ VL+SAFERI+VEN+YCDNPIGLLVVRAENIILIGE DPSLP
Subjt:  GSTVLDSAFERIVVENQYCDNPIGLLVVRAENIILIGESDPSLP
TrEMBL top hitse value%identityAlignment
A0A0D2QGC5 Uncharacterized protein2.7e-0643.1Show/hide
Query:  YRQITGSTVLDSAFERIVVENQYCDNPIGLLVVRAENIILIGESD---PSLPPNFLHI
        ++ ++ + VL+ A ER++V + YCD P+GL V+R EN++LIGE D     LPP+  H+
Subjt:  YRQITGSTVLDSAFERIVVENQYCDNPIGLLVVRAENIILIGESD---PSLPPNFLHI
A0A0D6R1G6 U6 snRNA-associated Sm-like protein LSm11.2e-0653.85Show/hide
Query:  STVLDSAFERIVVENQYCDNPIGLLVVRAENIILIGESDP---SLPPNFLHI
        + VL++AFERI+V + YCD P GL V+R EN++LIGE DP    LPPN + +
Subjt:  STVLDSAFERIVVENQYCDNPIGLLVVRAENIILIGESDP---SLPPNFLHI
A0A6J1GV01 sm-like protein LSM1B4.9e-0863.27Show/hide
Query:  GSTVLDSAFERIVVENQYCDNPIGLLVVRAENIILIGESD---PSLPPN
        G+ V++SAFERIV ENQYCD P+GLLVVR +N + IGE D   P LPP+
Subjt:  GSTVLDSAFERIVVENQYCDNPIGLLVVRAENIILIGESD---PSLPPN
A0A6J1IXE4 sm-like protein LSM1B4.9e-0863.27Show/hide
Query:  GSTVLDSAFERIVVENQYCDNPIGLLVVRAENIILIGESD---PSLPPN
        G+ V++SAFERI  ENQYCD P+GLLVVR +N I IGE D   P LPP+
Subjt:  GSTVLDSAFERIVVENQYCDNPIGLLVVRAENIILIGESD---PSLPPN
A9NQ94 U6 snRNA-associated Sm-like protein LSm11.2e-0651.92Show/hide
Query:  STVLDSAFERIVVENQYCDNPIGLLVVRAENIILIGESDP---SLPPNFLHI
        + VL++A ERI+V + YCD P+GL V+R EN++LIGE DP    LP N +H+
Subjt:  STVLDSAFERIVVENQYCDNPIGLLVVRAENIILIGESDP---SLPPNFLHI
SwissProt top hitse value%identityAlignment
Q8LFL8 Sm-like protein LSM1B6.2e-0848.08Show/hide
Query:  STVLDSAFERIVVENQYCDNPIGLLVVRAENIILIGESD---PSLPPNFLHI
        + VL+ A ER++V  QYCD P+GL V+R EN++LIGE D     LPP+ + +
Subjt:  STVLDSAFERIVVENQYCDNPIGLLVVRAENIILIGESD---PSLPPNFLHI
Q945P8 Sm-like protein LSM1A1.5e-0651.28Show/hide
Query:  STVLDSAFERIVVENQYCDNPIGLLVVRAENIILIGESD
        + VL+ A+ER++V + YCD P+GL ++R EN++LIGE D
Subjt:  STVLDSAFERIVVENQYCDNPIGLLVVRAENIILIGESD
Arabidopsis top hitse value%identityAlignment
AT1G19120.1 Small nuclear ribonucleoprotein family protein1.1e-0751.28Show/hide
Query:  STVLDSAFERIVVENQYCDNPIGLLVVRAENIILIGESD
        + VL+ A+ER++V + YCD P+GL ++R EN++LIGE D
Subjt:  STVLDSAFERIVVENQYCDNPIGLLVVRAENIILIGESD
AT3G14080.1 Small nuclear ribonucleoprotein family protein4.4e-0948.08Show/hide
Query:  STVLDSAFERIVVENQYCDNPIGLLVVRAENIILIGESD---PSLPPNFLHI
        + VL+ A ER++V  QYCD P+GL V+R EN++LIGE D     LPP+ + +
Subjt:  STVLDSAFERIVVENQYCDNPIGLLVVRAENIILIGESD---PSLPPNFLHI
AT3G14080.2 Small nuclear ribonucleoprotein family protein4.4e-0948.08Show/hide
Query:  STVLDSAFERIVVENQYCDNPIGLLVVRAENIILIGESD---PSLPPNFLHI
        + VL+ A ER++V  QYCD P+GL V+R EN++LIGE D     LPP+ + +
Subjt:  STVLDSAFERIVVENQYCDNPIGLLVVRAENIILIGESD---PSLPPNFLHI

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTTCGCCAATTATCTCCCAAGGCATCTTCTATCTTGGCGATTATCTTGACCGACCAAATTCTTGCTTTTCTTTCCCTCCTCCTCCTCCTCCTCCTCCTTCTTCTTC
TTCTAATTTCCCATGCTACAGGCAAATTACTGGGAGTACTGTTCTTGATAGTGCTTTTGAAAGAATTGTTGTTGAGAATCAGTATTGTGATAACCCCATTGGTCTTTTGG
TTGTTAGAGCCGAGAATATTATTTTAATTGGGGAGTCGGACCCCAGCTTGCCCCCCAACTTCCTCCACATATGA
mRNA sequenceShow/hide mRNA sequence
ATGGTTTCGCCAATTATCTCCCAAGGCATCTTCTATCTTGGCGATTATCTTGACCGACCAAATTCTTGCTTTTCTTTCCCTCCTCCTCCTCCTCCTCCTCCTTCTTCTTC
TTCTAATTTCCCATGCTACAGGCAAATTACTGGGAGTACTGTTCTTGATAGTGCTTTTGAAAGAATTGTTGTTGAGAATCAGTATTGTGATAACCCCATTGGTCTTTTGG
TTGTTAGAGCCGAGAATATTATTTTAATTGGGGAGTCGGACCCCAGCTTGCCCCCCAACTTCCTCCACATATGA
Protein sequenceShow/hide protein sequence
MVSPIISQGIFYLGDYLDRPNSCFSFPPPPPPPPSSSSNFPCYRQITGSTVLDSAFERIVVENQYCDNPIGLLVVRAENIILIGESDPSLPPNFLHI