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HG10002472 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10002472
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Descriptionarabinogalactan peptide 22-like
Genome locationChr11:7136153..7139448
RNA-Seq ExpressionHG10002472
SyntenyHG10002472
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR009424 - Arabinogalactan protein 16/20/22/41


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6577157.1 Arabinogalactan protein 20, partial [Cucurbita argyrosperma subsp. sororia]3.0e-2592.96Show/hide
Query:  MAVSRASFGFLAAAALVFAIFLPVAQPHSLAPAPAPTSDGTSIDQGIAYVLMVVALALTYLIHNADLSNSF
        MAVSR SFGF+AAAAL+FAIFLPVAQP SLAPAPAPTSDGTSIDQGIAYVLM+VALALTYLIHNADLSNSF
Subjt:  MAVSRASFGFLAAAALVFAIFLPVAQPHSLAPAPAPTSDGTSIDQGIAYVLMVVALALTYLIHNADLSNSF

XP_022136454.1 arabinogalactan peptide 22-like [Momordica charantia]4.0e-2591.55Show/hide
Query:  MAVSRASFGFLAAAALVFAIFLPVAQPHSLAPAPAPTSDGTSIDQGIAYVLMVVALALTYLIHNADLSNSF
        MAVSRASFGF+AAAAL+FAIFLPVA PHSL PAPAP+SDGTSIDQGIAYVLM+VALALTYLIHNADLSNSF
Subjt:  MAVSRASFGFLAAAALVFAIFLPVAQPHSLAPAPAPTSDGTSIDQGIAYVLMVVALALTYLIHNADLSNSF

XP_022931316.1 arabinogalactan peptide 22-like [Cucurbita moschata]2.3e-2592.96Show/hide
Query:  MAVSRASFGFLAAAALVFAIFLPVAQPHSLAPAPAPTSDGTSIDQGIAYVLMVVALALTYLIHNADLSNSF
        MAVSR SFGF+AAAAL+FAIFLPVAQP SLAPAPAPTSDGTSIDQGIAYVLM+VALALTYLIHNADLSNSF
Subjt:  MAVSRASFGFLAAAALVFAIFLPVAQPHSLAPAPAPTSDGTSIDQGIAYVLMVVALALTYLIHNADLSNSF

XP_022985432.1 arabinogalactan peptide 20 [Cucurbita maxima]8.8e-2591.55Show/hide
Query:  MAVSRASFGFLAAAALVFAIFLPVAQPHSLAPAPAPTSDGTSIDQGIAYVLMVVALALTYLIHNADLSNSF
        MAVSR SFGF+AAAAL+FAIFLPVAQP SLAPAPAPTSDGTSIDQGIAYVLM+VALALTYLIHNADLS+SF
Subjt:  MAVSRASFGFLAAAALVFAIFLPVAQPHSLAPAPAPTSDGTSIDQGIAYVLMVVALALTYLIHNADLSNSF

XP_038882280.1 arabinogalactan protein 22-like [Benincasa hispida]4.7e-2694.37Show/hide
Query:  MAVSRASFGFLAAAALVFAIFLPVAQPHSLAPAPAPTSDGTSIDQGIAYVLMVVALALTYLIHNADLSNSF
        MAVS ASFGFLAAAAL+FAIFLPVAQPHSLAPAPAPTSDGTSIDQGIAYVLM+VALALTYLIHNADLSN+F
Subjt:  MAVSRASFGFLAAAALVFAIFLPVAQPHSLAPAPAPTSDGTSIDQGIAYVLMVVALALTYLIHNADLSNSF

TrEMBL top hitse value%identityAlignment
A0A0A0KZS8 Uncharacterized protein6.8e-2391.04Show/hide
Query:  MAVSRASFGFLAAAALVFAIFLPVAQPHSLAPAPAPTSDGTSIDQGIAYVLMVVALALTYLIHNADL
        MAVSR+SFG LAA AL+FAIFLPVA PHSLAPAPAPTSDGTSIDQGIAYVLM+VALALTYLIHNADL
Subjt:  MAVSRASFGFLAAAALVFAIFLPVAQPHSLAPAPAPTSDGTSIDQGIAYVLMVVALALTYLIHNADL

A0A6J1C4C2 arabinogalactan peptide 22-like1.9e-2591.55Show/hide
Query:  MAVSRASFGFLAAAALVFAIFLPVAQPHSLAPAPAPTSDGTSIDQGIAYVLMVVALALTYLIHNADLSNSF
        MAVSRASFGF+AAAAL+FAIFLPVA PHSL PAPAP+SDGTSIDQGIAYVLM+VALALTYLIHNADLSNSF
Subjt:  MAVSRASFGFLAAAALVFAIFLPVAQPHSLAPAPAPTSDGTSIDQGIAYVLMVVALALTYLIHNADLSNSF

A0A6J1ETC6 arabinogalactan peptide 22-like1.1e-2592.96Show/hide
Query:  MAVSRASFGFLAAAALVFAIFLPVAQPHSLAPAPAPTSDGTSIDQGIAYVLMVVALALTYLIHNADLSNSF
        MAVSR SFGF+AAAAL+FAIFLPVAQP SLAPAPAPTSDGTSIDQGIAYVLM+VALALTYLIHNADLSNSF
Subjt:  MAVSRASFGFLAAAALVFAIFLPVAQPHSLAPAPAPTSDGTSIDQGIAYVLMVVALALTYLIHNADLSNSF

A0A6J1FMT5 arabinogalactan peptide 22-like1.2e-2288.57Show/hide
Query:  MAVSRASFGFLAAAALVFAIFLPVAQPHSLAPAPAPTSDGTSIDQGIAYVLMVVALALTYLIHNADLSNS
        MAVSRASFGF+AAAALVF IFLPVAQP SLAPAPAPTSDGTSIDQGIAY+LM VALALTYLIH+ADL +S
Subjt:  MAVSRASFGFLAAAALVFAIFLPVAQPHSLAPAPAPTSDGTSIDQGIAYVLMVVALALTYLIHNADLSNS

A0A6J1J4V7 arabinogalactan peptide 204.3e-2591.55Show/hide
Query:  MAVSRASFGFLAAAALVFAIFLPVAQPHSLAPAPAPTSDGTSIDQGIAYVLMVVALALTYLIHNADLSNSF
        MAVSR SFGF+AAAAL+FAIFLPVAQP SLAPAPAPTSDGTSIDQGIAYVLM+VALALTYLIHNADLS+SF
Subjt:  MAVSRASFGFLAAAALVFAIFLPVAQPHSLAPAPAPTSDGTSIDQGIAYVLMVVALALTYLIHNADLSNSF

SwissProt top hitse value%identityAlignment
O82337 Arabinogalactan protein 161.9e-1466.18Show/hide
Query:  SRASFGFLAAAALVFAIFLPVAQPHSLAPAPAPTSDGTSIDQGIAYVLMVVALALTYLIHNADLSNSF
        SR S    A  + VFA+ L +A   SLAPAPAPTSDGTSIDQGIAY+LMVVAL LTYLIH  D S+S+
Subjt:  SRASFGFLAAAALVFAIFLPVAQPHSLAPAPAPTSDGTSIDQGIAYVLMVVALALTYLIHNADLSNSF

Q8L9T8 Arabinogalactan protein 412.5e-1466.67Show/hide
Query:  MAVSRASFGFLAAAALVFAIFLPVAQPHSLAPAPAPTSDGTSIDQGIAYVLMVVALALTYLIH
        M+ SR  FG     +++FAI LP+A   S APAPAPTSDGT+IDQGIAYVLM+VAL LTYLIH
Subjt:  MAVSRASFGFLAAAALVFAIFLPVAQPHSLAPAPAPTSDGTSIDQGIAYVLMVVALALTYLIH

Q9FK16 Arabinogalactan protein 222.1e-1365.08Show/hide
Query:  MAVSRASFGFLAAAALVFAIFLPVAQPHSLAPAPAPTSDGTSIDQGIAYVLMVVALALTYLIH
        MA  +     LA   ++  I LP+AQ HS +PAPAPTSDGTSIDQGIAYVLM+VALALTY IH
Subjt:  MAVSRASFGFLAAAALVFAIFLPVAQPHSLAPAPAPTSDGTSIDQGIAYVLMVVALALTYLIH

Q9M373 Arabinogalactan protein 206.6e-1567.16Show/hide
Query:  SRASFGFLAAAALVFAIFLPVAQPHSLAPAPAPTSDGTSIDQGIAYVLMVVALALTYLIHNADLSNS
        SR S   +A  A VFA+  P A   SLAPAP+PTSDGTSIDQGIAY+LMVVAL LTYLIH  D S+S
Subjt:  SRASFGFLAAAALVFAIFLPVAQPHSLAPAPAPTSDGTSIDQGIAYVLMVVALALTYLIHNADLSNS

Arabidopsis top hitse value%identityAlignment
AT2G46330.1 arabinogalactan protein 161.4e-1566.18Show/hide
Query:  SRASFGFLAAAALVFAIFLPVAQPHSLAPAPAPTSDGTSIDQGIAYVLMVVALALTYLIHNADLSNSF
        SR S    A  + VFA+ L +A   SLAPAPAPTSDGTSIDQGIAY+LMVVAL LTYLIH  D S+S+
Subjt:  SRASFGFLAAAALVFAIFLPVAQPHSLAPAPAPTSDGTSIDQGIAYVLMVVALALTYLIHNADLSNSF

AT3G61640.1 arabinogalactan protein 204.7e-1667.16Show/hide
Query:  SRASFGFLAAAALVFAIFLPVAQPHSLAPAPAPTSDGTSIDQGIAYVLMVVALALTYLIHNADLSNS
        SR S   +A  A VFA+  P A   SLAPAP+PTSDGTSIDQGIAY+LMVVAL LTYLIH  D S+S
Subjt:  SRASFGFLAAAALVFAIFLPVAQPHSLAPAPAPTSDGTSIDQGIAYVLMVVALALTYLIHNADLSNS

AT5G24105.1 arabinogalactan protein 411.8e-1566.67Show/hide
Query:  MAVSRASFGFLAAAALVFAIFLPVAQPHSLAPAPAPTSDGTSIDQGIAYVLMVVALALTYLIH
        M+ SR  FG     +++FAI LP+A   S APAPAPTSDGT+IDQGIAYVLM+VAL LTYLIH
Subjt:  MAVSRASFGFLAAAALVFAIFLPVAQPHSLAPAPAPTSDGTSIDQGIAYVLMVVALALTYLIH

AT5G53250.1 arabinogalactan protein 221.5e-1465.08Show/hide
Query:  MAVSRASFGFLAAAALVFAIFLPVAQPHSLAPAPAPTSDGTSIDQGIAYVLMVVALALTYLIH
        MA  +     LA   ++  I LP+AQ HS +PAPAPTSDGTSIDQGIAYVLM+VALALTY IH
Subjt:  MAVSRASFGFLAAAALVFAIFLPVAQPHSLAPAPAPTSDGTSIDQGIAYVLMVVALALTYLIH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACGGCATGTGCCGAAGCAGCAGTGGCCAGGAAACATGCTCATGGGCCCCATTTTCCCATAACGGCCGAGAGAAAGGGAGATTCCTTTCTCTCTTTCTCTCTCTCTC
TGCGACCCTCTTGAAGCCATTGCAAGAAGAAGTCCCTGAAAGCTTCTTCATCTCAGAGACCCATCGCAGAGAGAGATCCACCCTCGCTTCTACATTTCTTTCCATTATTC
GCCTTAATAAAGCAGAGGAGAAATTACCCACCACGATTCTGACTCCAATGGCGGTTTCTAGGGCCTCTTTTGGATTTTTGGCTGCCGCCGCGCTCGTCTTTGCCATCTTC
TTGCCGGTTGCTCAGCCTCATTCCTTGGCTCCGGCACCCGCTCCCACCAGCGACGGGACATCCATAGACCAAGGGATAGCTTATGTGTTAATGGTGGTGGCATTGGCACT
CACATATCTCATCCACAATGCTGACTTATCCAACAGCTTCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGACGGCATGTGCCGAAGCAGCAGTGGCCAGGAAACATGCTCATGGGCCCCATTTTCCCATAACGGCCGAGAGAAAGGGAGATTCCTTTCTCTCTTTCTCTCTCTCTC
TGCGACCCTCTTGAAGCCATTGCAAGAAGAAGTCCCTGAAAGCTTCTTCATCTCAGAGACCCATCGCAGAGAGAGATCCACCCTCGCTTCTACATTTCTTTCCATTATTC
GCCTTAATAAAGCAGAGGAGAAATTACCCACCACGATTCTGACTCCAATGGCGGTTTCTAGGGCCTCTTTTGGATTTTTGGCTGCCGCCGCGCTCGTCTTTGCCATCTTC
TTGCCGGTTGCTCAGCCTCATTCCTTGGCTCCGGCACCCGCTCCCACCAGCGACGGGACATCCATAGACCAAGGGATAGCTTATGTGTTAATGGTGGTGGCATTGGCACT
CACATATCTCATCCACAATGCTGACTTATCCAACAGCTTCTAA
Protein sequenceShow/hide protein sequence
MDGMCRSSSGQETCSWAPFSHNGREKGRFLSLFLSLSATLLKPLQEEVPESFFISETHRRERSTLASTFLSIIRLNKAEEKLPTTILTPMAVSRASFGFLAAAALVFAIF
LPVAQPHSLAPAPAPTSDGTSIDQGIAYVLMVVALALTYLIHNADLSNSF