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HG10002517 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10002517
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionF-box/kelch-repeat protein
Genome locationChr11:7779889..7780221
RNA-Seq ExpressionHG10002517
SyntenyHG10002517
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GAV70675.1 F-box domain-containing protein, partial [Cephalotus follicularis]1.9e-3164.71Show/hide
Query:  MEFSEISIMPSGLLQSLVDGDEEDGFGRLKCVGLGDVIYVFNEENQRKYPVCVCEMNGENGKCRWKRVPPLPFRLNKFHNIITFASTVSLQNILGREDEE
        MEFSEI+IMP  LL SLVD +E+D F  LKCVGLG++IYVFNE+  +KYP CVCE++GE GKC W RVP LP  +NKFH +I+F S VSL NIL RE+EE
Subjt:  MEFSEISIMPSGLLQSLVDGDEEDGFGRLKCVGLGDVIYVFNEENQRKYPVCVCEMNGENGKCRWKRVPPLPFRLNKFHNIITFASTVSLQNILGREDEE

Query:  DE
         +
Subjt:  DE

KAE7997969.1 hypothetical protein FH972_002555 [Carpinus fangiana]5.1e-3265.05Show/hide
Query:  MEFSEISIMPSGLLQSLVDGDEEDGFGRLKCVGLGDVIYVFNEENQRKYPVCVCEMNGENGKCRWKRVPPLPFRLNKFHNIITFASTVSLQNIL-GREDE
        MEFSEI+IMP  LL SL D DE+D F  LKCVGLGD+IYVFNEE  + YP CVCE++ E+GKC+W+R+PPLP  +N+FH +I+F STVSL NIL GRE+ 
Subjt:  MEFSEISIMPSGLLQSLVDGDEEDGFGRLKCVGLGDVIYVFNEENQRKYPVCVCEMNGENGKCRWKRVPPLPFRLNKFHNIITFASTVSLQNIL-GREDE

Query:  EDE
         DE
Subjt:  EDE

PON51965.1 F-box domain containing protein [Parasponia andersonii]8.7e-3264.71Show/hide
Query:  MEFSEISIMPSGLLQSLVDGDEEDGFGRLKCVGLGDVIYVFNEENQRKYPVCVCEMNGENGKCRWKRVPPLPFRLNKFHNIITFASTVSLQNILGREDEE
        MEFSEI+IMP  LL SL D DE+D F  LKCVGLG++IYVFNEE  +KYP CVCE+  E+G+C W+RVP LP  +NKFH +I+F STVSL NIL  E+E+
Subjt:  MEFSEISIMPSGLLQSLVDGDEEDGFGRLKCVGLGDVIYVFNEENQRKYPVCVCEMNGENGKCRWKRVPPLPFRLNKFHNIITFASTVSLQNILGREDEE

Query:  DE
        DE
Subjt:  DE

PON65318.1 F-box domain containing protein [Trema orientale]3.0e-3267.65Show/hide
Query:  MEFSEISIMPSGLLQSLVDGDEEDGFGRLKCVGLGDVIYVFNEENQRKYPVCVCEMNGENGKCRWKRVPPLPFRLNKFHNIITFASTVSLQNILGREDEE
        MEFSEI+IMP  LL SL D DE+D F  LKCVGLG++IYVFNEE  +KYP CVCE+ GE+GKC W+RVP LP  +NKFH +I+F STVSL NIL R +EE
Subjt:  MEFSEISIMPSGLLQSLVDGDEEDGFGRLKCVGLGDVIYVFNEENQRKYPVCVCEMNGENGKCRWKRVPPLPFRLNKFHNIITFASTVSLQNILGREDEE

Query:  DE
        DE
Subjt:  DE

XP_004290225.1 PREDICTED: F-box/kelch-repeat protein At3g24760 [Fragaria vesca subsp. vesca]1.5e-3164.36Show/hide
Query:  MEFSEISIMPSGLLQSLVDGDEEDGFGRLKCVGLGDVIYVFNEENQRKYPVCVCEMNGENGKCRWKRVPPLPFRLNKFHNIITFASTVSLQNILGREDEE
        ME+SEI+IMP  LL SL +GDEED F  LKCVGLG+++YVFNEE  +KYP CVCE++GE GKC W+RVP LP  +NKFH +I+F STVSL +IL  E+E 
Subjt:  MEFSEISIMPSGLLQSLVDGDEEDGFGRLKCVGLGDVIYVFNEENQRKYPVCVCEMNGENGKCRWKRVPPLPFRLNKFHNIITFASTVSLQNILGREDEE

Query:  D
        D
Subjt:  D

TrEMBL top hitse value%identityAlignment
A0A1Q3BRT0 F-box domain-containing protein (Fragment)9.4e-3264.71Show/hide
Query:  MEFSEISIMPSGLLQSLVDGDEEDGFGRLKCVGLGDVIYVFNEENQRKYPVCVCEMNGENGKCRWKRVPPLPFRLNKFHNIITFASTVSLQNILGREDEE
        MEFSEI+IMP  LL SLVD +E+D F  LKCVGLG++IYVFNE+  +KYP CVCE++GE GKC W RVP LP  +NKFH +I+F S VSL NIL RE+EE
Subjt:  MEFSEISIMPSGLLQSLVDGDEEDGFGRLKCVGLGDVIYVFNEENQRKYPVCVCEMNGENGKCRWKRVPPLPFRLNKFHNIITFASTVSLQNILGREDEE

Query:  DE
         +
Subjt:  DE

A0A2P5BT69 F-box domain containing protein4.2e-3264.71Show/hide
Query:  MEFSEISIMPSGLLQSLVDGDEEDGFGRLKCVGLGDVIYVFNEENQRKYPVCVCEMNGENGKCRWKRVPPLPFRLNKFHNIITFASTVSLQNILGREDEE
        MEFSEI+IMP  LL SL D DE+D F  LKCVGLG++IYVFNEE  +KYP CVCE+  E+G+C W+RVP LP  +NKFH +I+F STVSL NIL  E+E+
Subjt:  MEFSEISIMPSGLLQSLVDGDEEDGFGRLKCVGLGDVIYVFNEENQRKYPVCVCEMNGENGKCRWKRVPPLPFRLNKFHNIITFASTVSLQNILGREDEE

Query:  DE
        DE
Subjt:  DE

A0A2P5CW93 F-box domain containing protein1.5e-3267.65Show/hide
Query:  MEFSEISIMPSGLLQSLVDGDEEDGFGRLKCVGLGDVIYVFNEENQRKYPVCVCEMNGENGKCRWKRVPPLPFRLNKFHNIITFASTVSLQNILGREDEE
        MEFSEI+IMP  LL SL D DE+D F  LKCVGLG++IYVFNEE  +KYP CVCE+ GE+GKC W+RVP LP  +NKFH +I+F STVSL NIL R +EE
Subjt:  MEFSEISIMPSGLLQSLVDGDEEDGFGRLKCVGLGDVIYVFNEENQRKYPVCVCEMNGENGKCRWKRVPPLPFRLNKFHNIITFASTVSLQNILGREDEE

Query:  DE
        DE
Subjt:  DE

A0A5N6QH38 F-box domain-containing protein2.5e-3265.05Show/hide
Query:  MEFSEISIMPSGLLQSLVDGDEEDGFGRLKCVGLGDVIYVFNEENQRKYPVCVCEMNGENGKCRWKRVPPLPFRLNKFHNIITFASTVSLQNIL-GREDE
        MEFSEI+IMP  LL SL D DE+D F  LKCVGLGD+IYVFNEE  + YP CVCE++ E+GKC+W+R+PPLP  +N+FH +I+F STVSL NIL GRE+ 
Subjt:  MEFSEISIMPSGLLQSLVDGDEEDGFGRLKCVGLGDVIYVFNEENQRKYPVCVCEMNGENGKCRWKRVPPLPFRLNKFHNIITFASTVSLQNIL-GREDE

Query:  EDE
         DE
Subjt:  EDE

A0A6P6GH76 F-box/kelch-repeat protein At3g24760 isoform X41.2e-3166.67Show/hide
Query:  MEFSEISIMPSGLLQSLVDGDEEDGFGRLKCVGLGDVIYVFNEENQRKYPVCVCEMNGENGKCRWKRVPPLPFRLNKFHNIITFASTVSLQNILGREDE
        MEFSEI+IMP  LL SL D DE+D F  LKCVGLG++IYVFNEE  RKYP C+CE++ E+GKC W RVP LP  +NKFH +I+F STVSLQNIL  E+E
Subjt:  MEFSEISIMPSGLLQSLVDGDEEDGFGRLKCVGLGDVIYVFNEENQRKYPVCVCEMNGENGKCRWKRVPPLPFRLNKFHNIITFASTVSLQNILGREDE

SwissProt top hitse value%identityAlignment
Q3EB08 F-box/kelch-repeat protein At3g247604.4e-2653Show/hide
Query:  MEFSEISIMPSGLLQSLVDGDEEDG-FGRLKCVGLGDVIYVFNEENQRKYPVCVCEM-NGENGKCRWKRVPPLPFRLNKFHNIITFASTVSLQNILGRED
        MEFSEI++MP  LL  LVD D+ED  F  LKC G G+++YVFN++  +K+P CVCE+  GENG C W+RVP LP  +NKFH +++F STVS+ ++   E+
Subjt:  MEFSEISIMPSGLLQSLVDGDEEDG-FGRLKCVGLGDVIYVFNEENQRKYPVCVCEM-NGENGKCRWKRVPPLPFRLNKFHNIITFASTVSLQNILGRED

Arabidopsis top hitse value%identityAlignment
AT3G24760.1 Galactose oxidase/kelch repeat superfamily protein3.1e-2753Show/hide
Query:  MEFSEISIMPSGLLQSLVDGDEEDG-FGRLKCVGLGDVIYVFNEENQRKYPVCVCEM-NGENGKCRWKRVPPLPFRLNKFHNIITFASTVSLQNILGRED
        MEFSEI++MP  LL  LVD D+ED  F  LKC G G+++YVFN++  +K+P CVCE+  GENG C W+RVP LP  +NKFH +++F STVS+ ++   E+
Subjt:  MEFSEISIMPSGLLQSLVDGDEEDG-FGRLKCVGLGDVIYVFNEENQRKYPVCVCEM-NGENGKCRWKRVPPLPFRLNKFHNIITFASTVSLQNILGRED


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAATTCAGCGAGATTTCAATAATGCCGAGCGGTCTGCTCCAGAGCTTGGTGGACGGCGATGAGGAGGATGGATTTGGGAGGTTGAAATGTGTTGGATTAGGGGATGT
GATTTACGTTTTCAATGAGGAGAATCAGAGGAAATATCCTGTTTGTGTTTGTGAAATGAACGGTGAGAATGGAAAGTGTAGGTGGAAAAGAGTGCCTCCATTGCCGTTTC
GTCTGAACAAGTTCCATAACATCATTACCTTCGCTTCTACTGTGTCTCTGCAGAACATTCTTGGCAGAGAAGATGAAGAAGATGAACATTATTCCTCACTCTCTCATTTT
TGA
mRNA sequenceShow/hide mRNA sequence
ATGGAATTCAGCGAGATTTCAATAATGCCGAGCGGTCTGCTCCAGAGCTTGGTGGACGGCGATGAGGAGGATGGATTTGGGAGGTTGAAATGTGTTGGATTAGGGGATGT
GATTTACGTTTTCAATGAGGAGAATCAGAGGAAATATCCTGTTTGTGTTTGTGAAATGAACGGTGAGAATGGAAAGTGTAGGTGGAAAAGAGTGCCTCCATTGCCGTTTC
GTCTGAACAAGTTCCATAACATCATTACCTTCGCTTCTACTGTGTCTCTGCAGAACATTCTTGGCAGAGAAGATGAAGAAGATGAACATTATTCCTCACTCTCTCATTTT
TGA
Protein sequenceShow/hide protein sequence
MEFSEISIMPSGLLQSLVDGDEEDGFGRLKCVGLGDVIYVFNEENQRKYPVCVCEMNGENGKCRWKRVPPLPFRLNKFHNIITFASTVSLQNILGREDEEDEHYSSLSHF