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HG10002641 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10002641
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionRNase H domain-containing protein
Genome locationChr11:9301633..9302070
RNA-Seq ExpressionHG10002641
SyntenyHG10002641
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
BAS77245.1 Os02g0175302 [Oryza sativa Japonica Group]2.8e-0931.85Show/hide
Query:  MEVEHGAAWSPDHRSSGLGWVLRNHLGRVRLVGLKFIKRCNDVKVLEALAICEGHLSIISHNIRPIVVESKCLEVVNLLSGCSKDLSEVSFFIHEAKLYA
        M++    ++ PD    GLG VLRN LG V      +I+RC      E +A  EG L  +   + PI++E+ C E++NLL       SE+ F + E     
Subjt:  MEVEHGAAWSPDHRSSGLGWVLRNHLGRVRLVGLKFIKRCNDVKVLEALAICEGHLSIISHNIRPIVVESKCLEVVNLLSGCSKDLSEVSFFIHEAKLYA

Query:  QELGDVCFAHVRCWNNVLAHSFASKALGEQFLHFF
             V  A V    N ++H  A+K   E+  HF+
Subjt:  QELGDVCFAHVRCWNNVLAHSFASKALGEQFLHFF

EEE56417.1 hypothetical protein OsJ_05582 [Oryza sativa Japonica Group]2.8e-0931.85Show/hide
Query:  MEVEHGAAWSPDHRSSGLGWVLRNHLGRVRLVGLKFIKRCNDVKVLEALAICEGHLSIISHNIRPIVVESKCLEVVNLLSGCSKDLSEVSFFIHEAKLYA
        M++    ++ PD    GLG VLRN LG V      +I+RC      E +A  EG L  +   + PI++E+ C E++NLL       SE+ F + E     
Subjt:  MEVEHGAAWSPDHRSSGLGWVLRNHLGRVRLVGLKFIKRCNDVKVLEALAICEGHLSIISHNIRPIVVESKCLEVVNLLSGCSKDLSEVSFFIHEAKLYA

Query:  QELGDVCFAHVRCWNNVLAHSFASKALGEQFLHFF
             V  A V    N ++H  A+K   E+  HF+
Subjt:  QELGDVCFAHVRCWNNVLAHSFASKALGEQFLHFF

XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]1.9e-1032.23Show/hide
Query:  AAWSPDHRSSGLGWVLRNHLGRVRLVGLKFIKRCNDVKVLEALAICEGHLSIISHNIRPIVVESKCLEVVNLLSGCSKDLSEVSFFIHEAKLYAQELGDV
        AAW  D  + G+GW+LR+  G V     + I+   ++  LE +AICEG  +I   + RPI +ES  LE ++LL    +D +E+ + + E     +++  V
Subjt:  AAWSPDHRSSGLGWVLRNHLGRVRLVGLKFIKRCNDVKVLEALAICEGHLSIISHNIRPIVVESKCLEVVNLLSGCSKDLSEVSFFIHEAKLYAQELGDV

Query:  CFAHVRCWNNVLAHSFASKAL
           H+    N +AH  A +A+
Subjt:  CFAHVRCWNNVLAHSFASKAL

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]5.6e-1033.88Show/hide
Query:  AAWSPDHRSSGLGWVLRNHLGRVRLVGLKFIKRCNDVKVLEALAICEGHLSIISHNI-RPIVVESKCLEVVNLLSGCSKDLSEVSFFIHEAKLYAQELGD
        A+WS      G+GW++R+  G + L G +F++ CN+VK+LEA AI EG  ++ +  + RP+ +E+   EV +LL+   +DL++  + + E          
Subjt:  AAWSPDHRSSGLGWVLRNHLGRVRLVGLKFIKRCNDVKVLEALAICEGHLSIISHNI-RPIVVESKCLEVVNLLSGCSKDLSEVSFFIHEAKLYAQELGD

Query:  VCFAHVRCWNNVLAHSFASKA
        + FA V    N  AHS A +A
Subjt:  VCFAHVRCWNNVLAHSFASKA

XP_038886170.1 uncharacterized protein LOC120076417 [Benincasa hispida]1.5e-1850.43Show/hide
Query:  AAWSPDHRSSGLGWVLRNHLGRVRLVGLKFIKRCNDVKVLEALAICEGHLSIISHNIRPIVVESKCL-EVVNLLSGCSKDLSEVSFFIHEAKLYAQELGD
        A+W+    + GLGWV  +HL RV + GLKF+ RC  V +LEA+AIC G   + S +I  I+VES CL EV+NLL+    DLSEVSF   EAK     LG 
Subjt:  AAWSPDHRSSGLGWVLRNHLGRVRLVGLKFIKRCNDVKVLEALAICEGHLSIISHNIRPIVVESKCL-EVVNLLSGCSKDLSEVSFFIHEAKLYAQELGD

Query:  VCFAHVRCWNNVLAH
        + F+HVR + NVLA+
Subjt:  VCFAHVRCWNNVLAH

TrEMBL top hitse value%identityAlignment
A0A0P0VFG5 Os02g0175302 protein1.3e-0931.85Show/hide
Query:  MEVEHGAAWSPDHRSSGLGWVLRNHLGRVRLVGLKFIKRCNDVKVLEALAICEGHLSIISHNIRPIVVESKCLEVVNLLSGCSKDLSEVSFFIHEAKLYA
        M++    ++ PD    GLG VLRN LG V      +I+RC      E +A  EG L  +   + PI++E+ C E++NLL       SE+ F + E     
Subjt:  MEVEHGAAWSPDHRSSGLGWVLRNHLGRVRLVGLKFIKRCNDVKVLEALAICEGHLSIISHNIRPIVVESKCLEVVNLLSGCSKDLSEVSFFIHEAKLYA

Query:  QELGDVCFAHVRCWNNVLAHSFASKALGEQFLHFF
             V  A V    N ++H  A+K   E+  HF+
Subjt:  QELGDVCFAHVRCWNNVLAHSFASKALGEQFLHFF

A0A6J1CP26 uncharacterized protein LOC1110134129.3e-1132.23Show/hide
Query:  AAWSPDHRSSGLGWVLRNHLGRVRLVGLKFIKRCNDVKVLEALAICEGHLSIISHNIRPIVVESKCLEVVNLLSGCSKDLSEVSFFIHEAKLYAQELGDV
        AAW  D  + G+GW+LR+  G V     + I+   ++  LE +AICEG  +I   + RPI +ES  LE ++LL    +D +E+ + + E     +++  V
Subjt:  AAWSPDHRSSGLGWVLRNHLGRVRLVGLKFIKRCNDVKVLEALAICEGHLSIISHNIRPIVVESKCLEVVNLLSGCSKDLSEVSFFIHEAKLYAQELGDV

Query:  CFAHVRCWNNVLAHSFASKAL
           H+    N +AH  A +A+
Subjt:  CFAHVRCWNNVLAHSFASKAL

A0A6J1DNV9 uncharacterized protein LOC1110224032.7e-1033.88Show/hide
Query:  AAWSPDHRSSGLGWVLRNHLGRVRLVGLKFIKRCNDVKVLEALAICEGHLSIISHNI-RPIVVESKCLEVVNLLSGCSKDLSEVSFFIHEAKLYAQELGD
        A+WS      G+GW++R+  G + L G +F++ CN+VK+LEA AI EG  ++ +  + RP+ +E+   EV +LL+   +DL++  + + E          
Subjt:  AAWSPDHRSSGLGWVLRNHLGRVRLVGLKFIKRCNDVKVLEALAICEGHLSIISHNI-RPIVVESKCLEVVNLLSGCSKDLSEVSFFIHEAKLYAQELGD

Query:  VCFAHVRCWNNVLAHSFASKA
        + FA V    N  AHS A +A
Subjt:  VCFAHVRCWNNVLAHSFASKA

B8AHI8 Uncharacterized protein1.3e-0931.85Show/hide
Query:  MEVEHGAAWSPDHRSSGLGWVLRNHLGRVRLVGLKFIKRCNDVKVLEALAICEGHLSIISHNIRPIVVESKCLEVVNLLSGCSKDLSEVSFFIHEAKLYA
        M++    ++ P     G+G VLR   GRV      FI RCN     E +A  +G    +   + PI VES CLE++ LL+   K LS   F + E +   
Subjt:  MEVEHGAAWSPDHRSSGLGWVLRNHLGRVRLVGLKFIKRCNDVKVLEALAICEGHLSIISHNIRPIVVESKCLEVVNLLSGCSKDLSEVSFFIHEAKLYA

Query:  QELGDVCFAHVRCWNNVLAHSFASKALGEQFLHFF
            +V FA V    N ++H  A+K   E  + F+
Subjt:  QELGDVCFAHVRCWNNVLAHSFASKALGEQFLHFF

B9F3B9 RNase H domain-containing protein1.3e-0931.85Show/hide
Query:  MEVEHGAAWSPDHRSSGLGWVLRNHLGRVRLVGLKFIKRCNDVKVLEALAICEGHLSIISHNIRPIVVESKCLEVVNLLSGCSKDLSEVSFFIHEAKLYA
        M++    ++ PD    GLG VLRN LG V      +I+RC      E +A  EG L  +   + PI++E+ C E++NLL       SE+ F + E     
Subjt:  MEVEHGAAWSPDHRSSGLGWVLRNHLGRVRLVGLKFIKRCNDVKVLEALAICEGHLSIISHNIRPIVVESKCLEVVNLLSGCSKDLSEVSFFIHEAKLYA

Query:  QELGDVCFAHVRCWNNVLAHSFASKALGEQFLHFF
             V  A V    N ++H  A+K   E+  HF+
Subjt:  QELGDVCFAHVRCWNNVLAHSFASKALGEQFLHFF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G29090.1 Ribonuclease H-like superfamily protein5.7e-0524.22Show/hide
Query:  AAWSPDHRSSGLGWVLRNHLGRVRLVGLKFIKRCNDVKVLEALAICEGHLSIISHNIRPIVVESKCLEVVNLLSGCSKDLSEVSFFIHEAKLYAQELGDV
        A W+ D+   G+GWVLRN  G V+ +G + + +   V   E  A+    LS+       ++ ES    ++ +L+   +    +   I + +    +  +V
Subjt:  AAWSPDHRSSGLGWVLRNHLGRVRLVGLKFIKRCNDVKVLEALAICEGHLSIISHNIRPIVVESKCLEVVNLLSGCSKDLSEVSFFIHEAKLYAQELGDV

Query:  CFAHVRCWNNVLAHSFASKALGEQFLHF
         F  +    N LA   A ++L   FL++
Subjt:  CFAHVRCWNNVLAHSFASKALGEQFLHF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGTTGAACATGGAGCTGCTTGGAGTCCTGATCATCGTTCTAGTGGCCTTGGTTGGGTGCTTCGGAACCACTTAGGTAGAGTTCGTCTTGTTGGTCTCAAGTTTAT
CAAAAGATGCAATGATGTAAAGGTCCTTGAAGCTCTGGCTATCTGTGAAGGCCATCTAAGCATTATTTCTCACAATATCCGACCAATTGTTGTGGAATCAAAGTGTTTGG
AGGTTGTTAACCTCTTGTCCGGATGCTCTAAGGATCTTTCAGAAGTTTCCTTCTTCATCCACGAGGCTAAGTTGTATGCTCAAGAGTTAGGCGATGTTTGTTTTGCCCAT
GTTCGTTGCTGGAATAATGTTTTAGCCCACTCTTTTGCCTCAAAGGCGTTGGGAGAGCAATTTCTTCATTTCTTCTTTCTCCCTACCTTGAGTGGTTTGGGTCTCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAAGTTGAACATGGAGCTGCTTGGAGTCCTGATCATCGTTCTAGTGGCCTTGGTTGGGTGCTTCGGAACCACTTAGGTAGAGTTCGTCTTGTTGGTCTCAAGTTTAT
CAAAAGATGCAATGATGTAAAGGTCCTTGAAGCTCTGGCTATCTGTGAAGGCCATCTAAGCATTATTTCTCACAATATCCGACCAATTGTTGTGGAATCAAAGTGTTTGG
AGGTTGTTAACCTCTTGTCCGGATGCTCTAAGGATCTTTCAGAAGTTTCCTTCTTCATCCACGAGGCTAAGTTGTATGCTCAAGAGTTAGGCGATGTTTGTTTTGCCCAT
GTTCGTTGCTGGAATAATGTTTTAGCCCACTCTTTTGCCTCAAAGGCGTTGGGAGAGCAATTTCTTCATTTCTTCTTTCTCCCTACCTTGAGTGGTTTGGGTCTCTAG
Protein sequenceShow/hide protein sequence
MEVEHGAAWSPDHRSSGLGWVLRNHLGRVRLVGLKFIKRCNDVKVLEALAICEGHLSIISHNIRPIVVESKCLEVVNLLSGCSKDLSEVSFFIHEAKLYAQELGDVCFAH
VRCWNNVLAHSFASKALGEQFLHFFFLPTLSGLGL