; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10002660 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10002660
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionCCHC-type domain-containing protein
Genome locationChr11:9516544..9517742
RNA-Seq ExpressionHG10002660
SyntenyHG10002660
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR025836 - Zinc knuckle CX2CX4HX4C
IPR040256 - Uncharacterized protein At4g02000-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
OMO61345.1 reverse transcriptase [Corchorus capsularis]1.1e-2732.1Show/hide
Query:  TDELMEAWKNFDLTTEEDTSPIGIIPKLVGEISGELDFCVIGKLLSSRIITAGAIRRAFANAWRMNLGFSVENIGKNLFLFKF-----------------
        T+ L + W+NF+L TEE+   + + P+LV E   E + C+IGKLLS R +    +R      W++  G  V  IG+NLF+F+F                 
Subjt:  TDELMEAWKNFDLTTEEDTSPIGIIPKLVGEISGELDFCVIGKLLSSRIITAGAIRRAFANAWRMNLGFSVENIGKNLFLFKF-----------------

Query:  --------------CK---KLDNC-----------GFLRQLMAIKLGDAIGEFLEVDCDQNDFCWGESLRIKVLIDINKPLRRGLKIQHFLHNKTGWVDI
                      C    KLD C           GF+ + +   +G++ G   E+D   +   WG+ LR +  +++ KPLRRG+ +      K   +  
Subjt:  --------------CK---KLDNC-----------GFLRQLMAIKLGDAIGEFLEVDCDQNDFCWGESLRIKVLIDINKPLRRGLKIQHFLHNKTGWVDI

Query:  RYERLPDFCYVCGCIGHVAKDCETIADLVSPILKKSYQYGPWL
        RYE+LPDFCYVCGC+ HV  +CE    +     K   +YGPWL
Subjt:  RYERLPDFCYVCGCIGHVAKDCETIADLVSPILKKSYQYGPWL

OMP03234.1 hypothetical protein COLO4_10561 [Corchorus olitorius]1.9e-2731.67Show/hide
Query:  LMEAWKNFDLTTEEDTSPIGIIPKLVGEISGELDFCVIGKLLSSRIITAGAIRRAFANAWRMNLGFSVENIGKNLFLFKFCK------------------
        L   W+NF+LT EE T  + +   +V E   E   C+IGKLLS R +    +R      W+++ G  V  IG+ L++F+F                    
Subjt:  LMEAWKNFDLTTEEDTSPIGIIPKLVGEISGELDFCVIGKLLSSRIITAGAIRRAFANAWRMNLGFSVENIGKNLFLFKFCK------------------

Query:  ----------------KLDNC-----------GFLRQLMAIKLGDAIGEFLEVDCDQNDFCWGESLRIKVLIDINKPLRRGLKIQHFLHNKTGWVDIRYE
                        KL+ C           GF+ + +   +GD+ GE +E+D   +   WG+ LRI+  +++NKPLRRG+ +      K   V  RYE
Subjt:  ----------------KLDNC-----------GFLRQLMAIKLGDAIGEFLEVDCDQNDFCWGESLRIKVLIDINKPLRRGLKIQHFLHNKTGWVDIRYE

Query:  RLPDFCYVCGCIGHVAKDCETIADLVSPILKKSYQYGPWL
        +LPDFCYVCGC+ H   +CE    +     K   +YGPWL
Subjt:  RLPDFCYVCGCIGHVAKDCETIADLVSPILKKSYQYGPWL

XP_022132681.1 uncharacterized protein LOC111005481 [Momordica charantia]2.5e-3235.29Show/hide
Query:  METDELMEAWKNFDLTTEEDTSPIGIIPKLVGEISGELDFCVIGKLLSSRIITAGAIRRAFANAWRMNL-GFSVENIGKNLFLFKFCKKLDNCGFLR---
        M    L+E WKNF LT+EED   + I    +      L+  +I KLLS R I+   ++     AW+++   FSV+ IG N+FLF F +  D    LR   
Subjt:  METDELMEAWKNFDLTTEEDTSPIGIIPKLVGEISGELDFCVIGKLLSSRIITAGAIRRAFANAWRMNL-GFSVENIGKNLFLFKFCKKLDNCGFLR---

Query:  ------------------------------------------QLMAIKLGDAIGEFLEVDCDQNDFCWGESLRIKVLIDINKPLRRGLKIQHFLHNKTG-
                                                  + MA +LG+AIG F +V+ + N+FCWG  LR++V  D+ KPL RG+K+   L    G 
Subjt:  ------------------------------------------QLMAIKLGDAIGEFLEVDCDQNDFCWGESLRIKVLIDINKPLRRGLKIQHFLHNKTG-

Query:  -WVDIRYERLPDFCYVCGCIGHVAKDCETIADLVSPILKKSYQYGPWLCFQGSPN
         W+ I+YERLPDF Y CG + H+ KDC   +D     + K+ QYGPWL FQG  N
Subjt:  -WVDIRYERLPDFCYVCGCIGHVAKDCETIADLVSPILKKSYQYGPWLCFQGSPN

XP_022156185.1 uncharacterized protein LOC111023135 [Momordica charantia]9.6e-4034.85Show/hide
Query:  METDELMEAWKNFDLTTEEDTSPIGIIPKLVGEISGELDFCVIGKLLSSRIITAGAIRRAFANAWRMNLGFSVENIGKNLFLFKFCKKLD----------
        M+ + L+  W+ F LT+EED   + +    V      L + ++GKLL+ RII+A  + R    AW++    +VE+IGKNLFLF FC++ D          
Subjt:  METDELMEAWKNFDLTTEEDTSPIGIIPKLVGEISGELDFCVIGKLLSSRIITAGAIRRAFANAWRMNLGFSVENIGKNLFLFKFCKKLD----------

Query:  -----------------------------------NCGFLRQLMAIKLGDAIGEFLEVDCDQNDFCWGESLRIKVLIDINKPLRRGLKIQHFLHNKTGWV
                                              +L + MAI+LG+AIG F++VDC++  F WG SLRI+VLIDI KPLRRG+KI         W+
Subjt:  -----------------------------------NCGFLRQLMAIKLGDAIGEFLEVDCDQNDFCWGESLRIKVLIDINKPLRRGLKIQHFLHNKTGWV

Query:  DIRYERLPDFCYVCGCIGHVAKDCETIADLVSPILKKSYQYGPWLCFQGSPNIRKRNSPDPKSPAKKVSPSDKIPVEEVMPNPQDKVEKGRGTPEINEKI
         I+YERLPDFCY CG IGH + DC+          + + +YGPWL F GS           K+ A+K     K P  E          K RG  E  +++
Subjt:  DIRYERLPDFCYVCGCIGHVAKDCETIADLVSPILKKSYQYGPWLCFQGSPNIRKRNSPDPKSPAKKVSPSDKIPVEEVMPNPQDKVEKGRGTPEINEKI

Query:  FEFQAQD
         E   QD
Subjt:  FEFQAQD

XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]6.9e-3032.45Show/hide
Query:  METDELMEAWKNFDLTTEEDTSPIGIIPKLVGEISGELDFCVIGKLLSSRIITAGAIRRAFANAWRM-NLGFSVENIGKNLFLFKFCKKLDN--------
        M T +L+E WKNF LT+EE+ + I +           L+  ++GKL   R IT   ++     AW++ N  F V+++G NLFLF F + LD         
Subjt:  METDELMEAWKNFDLTTEEDTSPIGIIPKLVGEISGELDFCVIGKLLSSRIITAGAIRRAFANAWRM-NLGFSVENIGKNLFLFKFCKKLDN--------

Query:  -------------------------------------CGFLRQLMAIKLGDAIGEFLEVDCDQNDFCWGESLRIKVLIDINKPLRRGLKIQHFLHNKTGW
                                              G + + MAI+LG+A+G F E DCD  +  WG +LR++V++DI+KPLRRG+K+         W
Subjt:  -------------------------------------CGFLRQLMAIKLGDAIGEFLEVDCDQNDFCWGESLRIKVLIDINKPLRRGLKIQHFLHNKTGW

Query:  VDIRYERLPDFCYVCGCIGHVAKDCETIADLVSPILKKSYQYGPWLCFQGSPNIRKRNSPDPKSP
        + I+YERLPDFCY CG                    +K +QYG WL +QG+    K   P  K P
Subjt:  VDIRYERLPDFCYVCGCIGHVAKDCETIADLVSPILKKSYQYGPWLCFQGSPNIRKRNSPDPKSP

TrEMBL top hitse value%identityAlignment
A0A1R3GTB5 Reverse transcriptase5.3e-2832.1Show/hide
Query:  TDELMEAWKNFDLTTEEDTSPIGIIPKLVGEISGELDFCVIGKLLSSRIITAGAIRRAFANAWRMNLGFSVENIGKNLFLFKF-----------------
        T+ L + W+NF+L TEE+   + + P+LV E   E + C+IGKLLS R +    +R      W++  G  V  IG+NLF+F+F                 
Subjt:  TDELMEAWKNFDLTTEEDTSPIGIIPKLVGEISGELDFCVIGKLLSSRIITAGAIRRAFANAWRMNLGFSVENIGKNLFLFKF-----------------

Query:  --------------CK---KLDNC-----------GFLRQLMAIKLGDAIGEFLEVDCDQNDFCWGESLRIKVLIDINKPLRRGLKIQHFLHNKTGWVDI
                      C    KLD C           GF+ + +   +G++ G   E+D   +   WG+ LR +  +++ KPLRRG+ +      K   +  
Subjt:  --------------CK---KLDNC-----------GFLRQLMAIKLGDAIGEFLEVDCDQNDFCWGESLRIKVLIDINKPLRRGLKIQHFLHNKTGWVDI

Query:  RYERLPDFCYVCGCIGHVAKDCETIADLVSPILKKSYQYGPWL
        RYE+LPDFCYVCGC+ HV  +CE    +     K   +YGPWL
Subjt:  RYERLPDFCYVCGCIGHVAKDCETIADLVSPILKKSYQYGPWL

A0A1R3K847 Uncharacterized protein9.1e-2831.67Show/hide
Query:  LMEAWKNFDLTTEEDTSPIGIIPKLVGEISGELDFCVIGKLLSSRIITAGAIRRAFANAWRMNLGFSVENIGKNLFLFKFCK------------------
        L   W+NF+LT EE T  + +   +V E   E   C+IGKLLS R +    +R      W+++ G  V  IG+ L++F+F                    
Subjt:  LMEAWKNFDLTTEEDTSPIGIIPKLVGEISGELDFCVIGKLLSSRIITAGAIRRAFANAWRMNLGFSVENIGKNLFLFKFCK------------------

Query:  ----------------KLDNC-----------GFLRQLMAIKLGDAIGEFLEVDCDQNDFCWGESLRIKVLIDINKPLRRGLKIQHFLHNKTGWVDIRYE
                        KL+ C           GF+ + +   +GD+ GE +E+D   +   WG+ LRI+  +++NKPLRRG+ +      K   V  RYE
Subjt:  ----------------KLDNC-----------GFLRQLMAIKLGDAIGEFLEVDCDQNDFCWGESLRIKVLIDINKPLRRGLKIQHFLHNKTGWVDIRYE

Query:  RLPDFCYVCGCIGHVAKDCETIADLVSPILKKSYQYGPWL
        +LPDFCYVCGC+ H   +CE    +     K   +YGPWL
Subjt:  RLPDFCYVCGCIGHVAKDCETIADLVSPILKKSYQYGPWL

A0A6J1BSZ1 uncharacterized protein LOC1110054811.2e-3235.29Show/hide
Query:  METDELMEAWKNFDLTTEEDTSPIGIIPKLVGEISGELDFCVIGKLLSSRIITAGAIRRAFANAWRMNL-GFSVENIGKNLFLFKFCKKLDNCGFLR---
        M    L+E WKNF LT+EED   + I    +      L+  +I KLLS R I+   ++     AW+++   FSV+ IG N+FLF F +  D    LR   
Subjt:  METDELMEAWKNFDLTTEEDTSPIGIIPKLVGEISGELDFCVIGKLLSSRIITAGAIRRAFANAWRMNL-GFSVENIGKNLFLFKFCKKLDNCGFLR---

Query:  ------------------------------------------QLMAIKLGDAIGEFLEVDCDQNDFCWGESLRIKVLIDINKPLRRGLKIQHFLHNKTG-
                                                  + MA +LG+AIG F +V+ + N+FCWG  LR++V  D+ KPL RG+K+   L    G 
Subjt:  ------------------------------------------QLMAIKLGDAIGEFLEVDCDQNDFCWGESLRIKVLIDINKPLRRGLKIQHFLHNKTG-

Query:  -WVDIRYERLPDFCYVCGCIGHVAKDCETIADLVSPILKKSYQYGPWLCFQGSPN
         W+ I+YERLPDF Y CG + H+ KDC   +D     + K+ QYGPWL FQG  N
Subjt:  -WVDIRYERLPDFCYVCGCIGHVAKDCETIADLVSPILKKSYQYGPWLCFQGSPN

A0A6J1DU55 uncharacterized protein LOC1110231354.6e-4034.85Show/hide
Query:  METDELMEAWKNFDLTTEEDTSPIGIIPKLVGEISGELDFCVIGKLLSSRIITAGAIRRAFANAWRMNLGFSVENIGKNLFLFKFCKKLD----------
        M+ + L+  W+ F LT+EED   + +    V      L + ++GKLL+ RII+A  + R    AW++    +VE+IGKNLFLF FC++ D          
Subjt:  METDELMEAWKNFDLTTEEDTSPIGIIPKLVGEISGELDFCVIGKLLSSRIITAGAIRRAFANAWRMNLGFSVENIGKNLFLFKFCKKLD----------

Query:  -----------------------------------NCGFLRQLMAIKLGDAIGEFLEVDCDQNDFCWGESLRIKVLIDINKPLRRGLKIQHFLHNKTGWV
                                              +L + MAI+LG+AIG F++VDC++  F WG SLRI+VLIDI KPLRRG+KI         W+
Subjt:  -----------------------------------NCGFLRQLMAIKLGDAIGEFLEVDCDQNDFCWGESLRIKVLIDINKPLRRGLKIQHFLHNKTGWV

Query:  DIRYERLPDFCYVCGCIGHVAKDCETIADLVSPILKKSYQYGPWLCFQGSPNIRKRNSPDPKSPAKKVSPSDKIPVEEVMPNPQDKVEKGRGTPEINEKI
         I+YERLPDFCY CG IGH + DC+          + + +YGPWL F GS           K+ A+K     K P  E          K RG  E  +++
Subjt:  DIRYERLPDFCYVCGCIGHVAKDCETIADLVSPILKKSYQYGPWLCFQGSPNIRKRNSPDPKSPAKKVSPSDKIPVEEVMPNPQDKVEKGRGTPEINEKI

Query:  FEFQAQD
         E   QD
Subjt:  FEFQAQD

A0A6J1DX30 uncharacterized protein LOC1110248743.3e-3032.45Show/hide
Query:  METDELMEAWKNFDLTTEEDTSPIGIIPKLVGEISGELDFCVIGKLLSSRIITAGAIRRAFANAWRM-NLGFSVENIGKNLFLFKFCKKLDN--------
        M T +L+E WKNF LT+EE+ + I +           L+  ++GKL   R IT   ++     AW++ N  F V+++G NLFLF F + LD         
Subjt:  METDELMEAWKNFDLTTEEDTSPIGIIPKLVGEISGELDFCVIGKLLSSRIITAGAIRRAFANAWRM-NLGFSVENIGKNLFLFKFCKKLDN--------

Query:  -------------------------------------CGFLRQLMAIKLGDAIGEFLEVDCDQNDFCWGESLRIKVLIDINKPLRRGLKIQHFLHNKTGW
                                              G + + MAI+LG+A+G F E DCD  +  WG +LR++V++DI+KPLRRG+K+         W
Subjt:  -------------------------------------CGFLRQLMAIKLGDAIGEFLEVDCDQNDFCWGESLRIKVLIDINKPLRRGLKIQHFLHNKTGW

Query:  VDIRYERLPDFCYVCGCIGHVAKDCETIADLVSPILKKSYQYGPWLCFQGSPNIRKRNSPDPKSP
        + I+YERLPDFCY CG                    +K +QYG WL +QG+    K   P  K P
Subjt:  VDIRYERLPDFCYVCGCIGHVAKDCETIADLVSPILKKSYQYGPWLCFQGSPNIRKRNSPDPKSP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAACTGATGAGCTTATGGAGGCATGGAAGAATTTTGATTTGACGACGGAGGAAGATACTTCTCCGATTGGAATTATTCCAAAATTAGTTGGTGAGATTAGTGGAGA
ACTAGATTTCTGCGTAATTGGTAAACTTTTGTCTTCAAGAATCATCACGGCGGGGGCGATAAGGCGTGCCTTTGCAAATGCGTGGAGGATGAATCTTGGGTTCAGTGTGG
AAAACATTGGCAAAAATCTTTTTCTTTTTAAGTTCTGTAAAAAGCTAGATAATTGTGGGTTCTTAAGGCAGTTGATGGCCATAAAACTTGGGGATGCTATTGGCGAGTTC
TTGGAGGTTGACTGTGATCAAAATGATTTCTGTTGGGGAGAATCTTTGCGTATTAAGGTTCTTATAGATATAAATAAACCTCTGCGAAGAGGTTTAAAAATTCAACATTT
TCTCCATAACAAGACTGGGTGGGTGGATATTAGATATGAACGTCTTCCAGACTTTTGTTACGTTTGTGGATGTATTGGACATGTTGCGAAAGATTGTGAGACAATTGCTG
ATTTGGTTTCTCCCATCTTAAAGAAATCCTACCAATATGGACCTTGGTTATGTTTTCAAGGTAGCCCCAATATCAGGAAAAGAAATTCTCCAGATCCTAAGAGCCCTGCA
AAGAAAGTTTCTCCGTCTGATAAGATCCCGGTGGAAGAAGTAATGCCAAACCCACAGGATAAAGTGGAAAAAGGTAGGGGAACTCCTGAGATTAATGAAAAGATCTTTGA
ATTTCAAGCCCAAGATCTTGCAAAGAATTCTTGTTTGGGGTACAGGAAAGCTGAGCCAGTTTTGTCTGCAGTATCCTCTTTTTCATCACCAGTTCTTCATGTGGGGCTGG
ACAAAGAGCTGTTATTTCCGTGTGCTAGTTCAGATCCTTGGAACAAAAATTTTTCGTCTGATGTTGGAAGATGTCAGTCTTTAGAAAGTGAAGGGATGAGTTCTCAAGGT
CATACTACTAAAGGTTGGAAAAGGAAAGCAAGATTAGATTCGGTTTCTTGTCAAAGAAGGAACTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAAACTGATGAGCTTATGGAGGCATGGAAGAATTTTGATTTGACGACGGAGGAAGATACTTCTCCGATTGGAATTATTCCAAAATTAGTTGGTGAGATTAGTGGAGA
ACTAGATTTCTGCGTAATTGGTAAACTTTTGTCTTCAAGAATCATCACGGCGGGGGCGATAAGGCGTGCCTTTGCAAATGCGTGGAGGATGAATCTTGGGTTCAGTGTGG
AAAACATTGGCAAAAATCTTTTTCTTTTTAAGTTCTGTAAAAAGCTAGATAATTGTGGGTTCTTAAGGCAGTTGATGGCCATAAAACTTGGGGATGCTATTGGCGAGTTC
TTGGAGGTTGACTGTGATCAAAATGATTTCTGTTGGGGAGAATCTTTGCGTATTAAGGTTCTTATAGATATAAATAAACCTCTGCGAAGAGGTTTAAAAATTCAACATTT
TCTCCATAACAAGACTGGGTGGGTGGATATTAGATATGAACGTCTTCCAGACTTTTGTTACGTTTGTGGATGTATTGGACATGTTGCGAAAGATTGTGAGACAATTGCTG
ATTTGGTTTCTCCCATCTTAAAGAAATCCTACCAATATGGACCTTGGTTATGTTTTCAAGGTAGCCCCAATATCAGGAAAAGAAATTCTCCAGATCCTAAGAGCCCTGCA
AAGAAAGTTTCTCCGTCTGATAAGATCCCGGTGGAAGAAGTAATGCCAAACCCACAGGATAAAGTGGAAAAAGGTAGGGGAACTCCTGAGATTAATGAAAAGATCTTTGA
ATTTCAAGCCCAAGATCTTGCAAAGAATTCTTGTTTGGGGTACAGGAAAGCTGAGCCAGTTTTGTCTGCAGTATCCTCTTTTTCATCACCAGTTCTTCATGTGGGGCTGG
ACAAAGAGCTGTTATTTCCGTGTGCTAGTTCAGATCCTTGGAACAAAAATTTTTCGTCTGATGTTGGAAGATGTCAGTCTTTAGAAAGTGAAGGGATGAGTTCTCAAGGT
CATACTACTAAAGGTTGGAAAAGGAAAGCAAGATTAGATTCGGTTTCTTGTCAAAGAAGGAACTGA
Protein sequenceShow/hide protein sequence
METDELMEAWKNFDLTTEEDTSPIGIIPKLVGEISGELDFCVIGKLLSSRIITAGAIRRAFANAWRMNLGFSVENIGKNLFLFKFCKKLDNCGFLRQLMAIKLGDAIGEF
LEVDCDQNDFCWGESLRIKVLIDINKPLRRGLKIQHFLHNKTGWVDIRYERLPDFCYVCGCIGHVAKDCETIADLVSPILKKSYQYGPWLCFQGSPNIRKRNSPDPKSPA
KKVSPSDKIPVEEVMPNPQDKVEKGRGTPEINEKIFEFQAQDLAKNSCLGYRKAEPVLSAVSSFSSPVLHVGLDKELLFPCASSDPWNKNFSSDVGRCQSLESEGMSSQG
HTTKGWKRKARLDSVSCQRRN