CuGenDBv2

Gene ID	HG10002665
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	BEST Arabidopsis thaliana protein match is: eukaryotic translation initiation factor 3A .
Genome location	Chr11:9566663..9570847
RNA-Seq Expression	HG10002665
Synteny	HG10002665
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004146523.1 uncharacterized protein LOC101210623 [Cucumis sativus]

2.5e-58

88.39

Show/hide

Query:  MEQSRADSS-TSIETEGQIPGTSQNSTTCSVTVIEDCTKTQS-----EIFKAIEVVEKDSLAIAESFTSLFASLRLVLSEVTSNSIDHMHCFNDAAGRLQ
        MEQS ADSS TSIETE QIP TS NSTT S  VIEDCTKTQS     +I KAIEVVEKDSLA+AESFTSLFASLR VLSEVTSNSIDHMHCFNDAAGRLQ
Subjt:  MEQSRADSS-TSIETEGQIPGTSQNSTTCSVTVIEDCTKTQS-----EIFKAIEVVEKDSLAIAESFTSLFASLRLVLSEVTSNSIDHMHCFNDAAGRLQ

Query:  ESVLDAATKGNRYINSSLRLNQEMKGMDSLAAQLKVLRKNVDELDLAVNKLLNFP
        ESVLDAATKGNRYINSSLRLNQEMKGMD+LAAQLKVLRKNVDELDLAVNKLLNFP
Subjt:  ESVLDAATKGNRYINSSLRLNQEMKGMDSLAAQLKVLRKNVDELDLAVNKLLNFP

XP_008452025.1 PREDICTED: uncharacterized protein LOC103493156 [Cucumis melo]

2.8e-57

87.1

Show/hide

Query:  MEQSRADSS-TSIETEGQIPGTSQNSTTCSVTVIEDCTKTQS-----EIFKAIEVVEKDSLAIAESFTSLFASLRLVLSEVTSNSIDHMHCFNDAAGRLQ
        MEQS ADSS TSIETE QIP TS NSTT S   +EDCTKTQS     +I +AIEVVEKDSLAIAESFTSLFASLR VLSEVTSNSIDHMHCFNDAAGRLQ
Subjt:  MEQSRADSS-TSIETEGQIPGTSQNSTTCSVTVIEDCTKTQS-----EIFKAIEVVEKDSLAIAESFTSLFASLRLVLSEVTSNSIDHMHCFNDAAGRLQ

Query:  ESVLDAATKGNRYINSSLRLNQEMKGMDSLAAQLKVLRKNVDELDLAVNKLLNFP
        ESVLDAATKGNRYINSSLRLNQEMKGMD+LAAQLKVLRKNVDELDLAVNKLLNFP
Subjt:  ESVLDAATKGNRYINSSLRLNQEMKGMDSLAAQLKVLRKNVDELDLAVNKLLNFP

XP_022931514.1 uncharacterized protein LOC111437668 [Cucurbita moschata]

5.8e-55

80.89

Show/hide

Query:  MEQSRADSSTSIETEGQIPGTSQNST---TCSVTVIEDCTKTQS-----EIFKAIEVVEKDSLAIAESFTSLFASLRLVLSEVTSNSIDHMHCFNDAAGR
        MEQS +DSS+SIE   QIP TS NS    T + +V+EDCT+ +S     EIFKAI+VVEKDSLAIAESFTSLFASLR  LSEVTSNSIDHMHCFNDAAGR
Subjt:  MEQSRADSSTSIETEGQIPGTSQNST---TCSVTVIEDCTKTQS-----EIFKAIEVVEKDSLAIAESFTSLFASLRLVLSEVTSNSIDHMHCFNDAAGR

Query:  LQESVLDAATKGNRYINSSLRLNQEMKGMDSLAAQLKVLRKNVDELDLAVNKLLNFP
        LQESVLDAATKGNRYINSSLRLNQEMKGMD+LAAQLK+LRKNVDELDLAVNKLLNFP
Subjt:  LQESVLDAATKGNRYINSSLRLNQEMKGMDSLAAQLKVLRKNVDELDLAVNKLLNFP

XP_023553161.1 uncharacterized protein LOC111810650 [Cucurbita pepo subsp. pepo]

2.6e-55

81.53

Show/hide

Query:  MEQSRADSSTSIETEGQIPGTSQNST---TCSVTVIEDCTKTQS-----EIFKAIEVVEKDSLAIAESFTSLFASLRLVLSEVTSNSIDHMHCFNDAAGR
        MEQS +DSSTSIE   QIP TS NS    T + +V+EDCT+ +S     EIFKAI+VVEKDSLAIAESFTSLFASLR  LSEVTSNSIDHMHCFNDAAGR
Subjt:  MEQSRADSSTSIETEGQIPGTSQNST---TCSVTVIEDCTKTQS-----EIFKAIEVVEKDSLAIAESFTSLFASLRLVLSEVTSNSIDHMHCFNDAAGR

Query:  LQESVLDAATKGNRYINSSLRLNQEMKGMDSLAAQLKVLRKNVDELDLAVNKLLNFP
        LQESVLDAATKGNRYINSSLRLNQEMKGMD+LAAQLK+LRKNVDELDLAVNKLLNFP
Subjt:  LQESVLDAATKGNRYINSSLRLNQEMKGMDSLAAQLKVLRKNVDELDLAVNKLLNFP

XP_038878050.1 uncharacterized protein LOC120070236 [Benincasa hispida]

2.0e-63

93.96

Show/hide

Query:  MEQSRADSSTSIETEGQIPGTSQNSTTCSVTVIEDCTKTQSEIFKAIEVVEKDSLAIAESFTSLFASLRLVLSEVTSNSIDHMHCFNDAAGRLQESVLDA
        MEQSRADSSTSIE   QI GTS NS TCS  VIEDCTKTQSEIFKAIEVVEKDSLAIAESFTSLFASLRLVLSEVTSNSIDHMHCFNDAAGRLQESVLDA
Subjt:  MEQSRADSSTSIETEGQIPGTSQNSTTCSVTVIEDCTKTQSEIFKAIEVVEKDSLAIAESFTSLFASLRLVLSEVTSNSIDHMHCFNDAAGRLQESVLDA

Query:  ATKGNRYINSSLRLNQEMKGMDSLAAQLKVLRKNVDELDLAVNKLLNFP
        ATKGNRYINSSLRLNQEMKGMD+LAAQLKVLRKNVDELDLAVNKLLNFP
Subjt:  ATKGNRYINSSLRLNQEMKGMDSLAAQLKVLRKNVDELDLAVNKLLNFP

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KWT2 Uncharacterized protein

1.2e-58

88.39

Show/hide

Query:  MEQSRADSS-TSIETEGQIPGTSQNSTTCSVTVIEDCTKTQS-----EIFKAIEVVEKDSLAIAESFTSLFASLRLVLSEVTSNSIDHMHCFNDAAGRLQ
        MEQS ADSS TSIETE QIP TS NSTT S  VIEDCTKTQS     +I KAIEVVEKDSLA+AESFTSLFASLR VLSEVTSNSIDHMHCFNDAAGRLQ
Subjt:  MEQSRADSS-TSIETEGQIPGTSQNSTTCSVTVIEDCTKTQS-----EIFKAIEVVEKDSLAIAESFTSLFASLRLVLSEVTSNSIDHMHCFNDAAGRLQ

Query:  ESVLDAATKGNRYINSSLRLNQEMKGMDSLAAQLKVLRKNVDELDLAVNKLLNFP
        ESVLDAATKGNRYINSSLRLNQEMKGMD+LAAQLKVLRKNVDELDLAVNKLLNFP
Subjt:  ESVLDAATKGNRYINSSLRLNQEMKGMDSLAAQLKVLRKNVDELDLAVNKLLNFP

A0A1S3BTP0 uncharacterized protein LOC103493156

1.4e-57

87.1

Show/hide

Query:  MEQSRADSS-TSIETEGQIPGTSQNSTTCSVTVIEDCTKTQS-----EIFKAIEVVEKDSLAIAESFTSLFASLRLVLSEVTSNSIDHMHCFNDAAGRLQ
        MEQS ADSS TSIETE QIP TS NSTT S   +EDCTKTQS     +I +AIEVVEKDSLAIAESFTSLFASLR VLSEVTSNSIDHMHCFNDAAGRLQ
Subjt:  MEQSRADSS-TSIETEGQIPGTSQNSTTCSVTVIEDCTKTQS-----EIFKAIEVVEKDSLAIAESFTSLFASLRLVLSEVTSNSIDHMHCFNDAAGRLQ

Query:  ESVLDAATKGNRYINSSLRLNQEMKGMDSLAAQLKVLRKNVDELDLAVNKLLNFP
        ESVLDAATKGNRYINSSLRLNQEMKGMD+LAAQLKVLRKNVDELDLAVNKLLNFP
Subjt:  ESVLDAATKGNRYINSSLRLNQEMKGMDSLAAQLKVLRKNVDELDLAVNKLLNFP

A0A6J1C7Z8 uncharacterized protein LOC111008257 isoform X2

8.0e-50

76.73

Show/hide

Query:  MEQSRADSSTSIETEGQIPGTSQNST-----TCSVTVIEDCTKT-----QSEIFKAIEVVEKDSLAIAESFTSLFASLRLVLSEVTSNSIDHMHCFNDAA
        M+Q+RAD ST I++  QIPGTS NST     TCS  V+ED TK+     Q+EIFKAIEVVEKDSLAIAESFTSLFASLR  LSE + NSIDHMHCF+DAA
Subjt:  MEQSRADSSTSIETEGQIPGTSQNST-----TCSVTVIEDCTKT-----QSEIFKAIEVVEKDSLAIAESFTSLFASLRLVLSEVTSNSIDHMHCFNDAA

Query:  GRLQESVLDAATKGNRYINSSLRLNQEMKGMDSLAAQLKVLRKNVDELDLAVNKLLNFP
        G LQESVLDAATKGNRYINSSLRLNQEMKG+D+LAAQLKVLRKNVD LD AVNKLL+FP
Subjt:  GRLQESVLDAATKGNRYINSSLRLNQEMKGMDSLAAQLKVLRKNVDELDLAVNKLLNFP

A0A6J1EUG1 uncharacterized protein LOC111437668

2.8e-55

80.89

Show/hide

Query:  MEQSRADSSTSIETEGQIPGTSQNST---TCSVTVIEDCTKTQS-----EIFKAIEVVEKDSLAIAESFTSLFASLRLVLSEVTSNSIDHMHCFNDAAGR
        MEQS +DSS+SIE   QIP TS NS    T + +V+EDCT+ +S     EIFKAI+VVEKDSLAIAESFTSLFASLR  LSEVTSNSIDHMHCFNDAAGR
Subjt:  MEQSRADSSTSIETEGQIPGTSQNST---TCSVTVIEDCTKTQS-----EIFKAIEVVEKDSLAIAESFTSLFASLRLVLSEVTSNSIDHMHCFNDAAGR

Query:  LQESVLDAATKGNRYINSSLRLNQEMKGMDSLAAQLKVLRKNVDELDLAVNKLLNFP
        LQESVLDAATKGNRYINSSLRLNQEMKGMD+LAAQLK+LRKNVDELDLAVNKLLNFP
Subjt:  LQESVLDAATKGNRYINSSLRLNQEMKGMDSLAAQLKVLRKNVDELDLAVNKLLNFP

A0A6J1J2E9 uncharacterized protein LOC111482798

6.3e-55

80.25

Show/hide

Query:  MEQSRADSSTSIETEGQIPGTSQNST---TCSVTVIEDCTKTQS-----EIFKAIEVVEKDSLAIAESFTSLFASLRLVLSEVTSNSIDHMHCFNDAAGR
        MEQS +DSS+SIE   QIP TS NS    T + +V+EDCT+ +S     EIFKAI+VVEK+SLAIAESFTSLFASLR  LSEVTSNSIDHMHCFNDAAGR
Subjt:  MEQSRADSSTSIETEGQIPGTSQNST---TCSVTVIEDCTKTQS-----EIFKAIEVVEKDSLAIAESFTSLFASLRLVLSEVTSNSIDHMHCFNDAAGR

Query:  LQESVLDAATKGNRYINSSLRLNQEMKGMDSLAAQLKVLRKNVDELDLAVNKLLNFP
        LQESVLDAATKGNRYINSSLRLNQEMKGMD+LAAQLK+LRKNVDELDLAVNKLLNFP
Subjt:  LQESVLDAATKGNRYINSSLRLNQEMKGMDSLAAQLKVLRKNVDELDLAVNKLLNFP

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT4G23330.1 BEST Arabidopsis thaliana protein match is: eukaryotic translation initiation factor 3A (TAIR:AT4G11420.1)

8.2e-23

56.88

Show/hide

Query:  ADSSTSIETEGQIPGTSQNSTTCSVTVIEDCTKTQSEIFKAIEVVEKDSLAIAESFTSLFASLRLVLSEVTSNSIDHMHCFNDAAGRLQESVLDAATKGN
        ADS+  I  E    G S+ S+             Q EI K +  VEKDS AIAESF+SLF SLR  LSE T +S+DHM CF +AAGRLQE+ LDAATKGN
Subjt:  ADSSTSIETEGQIPGTSQNSTTCSVTVIEDCTKTQSEIFKAIEVVEKDSLAIAESFTSLFASLRLVLSEVTSNSIDHMHCFNDAAGRLQESVLDAATKGN

Query:  RYINSSLRL
        RYINS LRL
Subjt:  RYINSSLRL

AT4G23330.2 unknown protein

8.5e-36

59.72

Show/hide

Query:  ADSSTSIETEGQIPGTSQNSTTCSVTVIEDCTKTQSEIFKAIEVVEKDSLAIAESFTSLFASLRLVLSEVTSNSIDHMHCFNDAAGRLQESVLDAATKGN
        ADS+  I  E    G S+ S+             Q EI K +  VEKDS AIAESF+SLF SLR  LSE T +S+DHM CF +AAGRLQE+ LDAATKGN
Subjt:  ADSSTSIETEGQIPGTSQNSTTCSVTVIEDCTKTQSEIFKAIEVVEKDSLAIAESFTSLFASLRLVLSEVTSNSIDHMHCFNDAAGRLQESVLDAATKGN

Query:  RYINSSLRLNQEMKGMDSLAAQLKVLRKNVDELDLAVNKLLNFP
        RYINS LRLN+E+KG+++LAA+LK LRKNVD LD AVNKLL  P
Subjt:  RYINSSLRLNQEMKGMDSLAAQLKVLRKNVDELDLAVNKLLNFP

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGAGCAATCTCGAGCGGATTCTTCGACGAGCATCGAAACTGAAGGTCAGATTCCGGGGACATCCCAAAATTCGACCACTTGTTCTGTGACTGTCATTGAAGATTGCAC
CAAAACCCAATCCGAGATTTTCAAAGCCATTGAAGTCGTTGAGAAGGATTCTCTCGCCATTGCTGAGAGCTTCACCTCTCTCTTTGCTTCCCTGCGTTTGGTTCTCTCCG
AGGTCACCAGCAACTCTATTGATCATATGCATTGCTTCAACGATGCTGCAGGGCGCCTTCAAGAATCTGTGCTTGATGCGGCAACGAAGGGCAATCGATACATTAATTCT
TCCTTGAGATTGAATCAGGAAATGAAAGGCATGGACAGTCTAGCTGCTCAGCTAAAGGTTTTGAGGAAGAATGTGGATGAACTAGACTTGGCCGTGAACAAGCTCCTAAA
TTTTCCATGA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MEQSRADSSTSIETEGQIPGTSQNSTTCSVTVIEDCTKTQSEIFKAIEVVEKDSLAIAESFTSLFASLRLVLSEVTSNSIDHMHCFNDAAGRLQESVLDAATKGNRYINS
SLRLNQEMKGMDSLAAQLKVLRKNVDELDLAVNKLLNFP

HG10002665 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome