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HG10002671 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10002671
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Descriptionnuclear transcription factor Y subunit C-1-like
Genome locationChr11:9621027..9621389
RNA-Seq ExpressionHG10002671
SyntenyHG10002671
Gene Ontology termsGO:0045944 - positive regulation of transcription by RNA polymerase II (biological process)
GO:0005634 - nucleus (cellular component)
GO:0001228 - DNA-binding transcription activator activity, RNA polymerase II-specific (molecular function)
GO:0046982 - protein heterodimerization activity (molecular function)
InterPro domainsIPR003958 - Transcription factor CBF/NF-Y/archaeal histone domain
IPR009072 - Histone-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6577185.1 hypothetical protein SDJN03_24759, partial [Cucurbita argyrosperma subsp. sororia]1.2e-5089.26Show/hide
Query:  MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTRRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNE-
        MRQAGAYSGV YWKTGPHSLPLARIKKIMKKSGE+VKMIS EAPIVFSKACELF+EELT+RSWMIAMQSKKRMLHKEDVASAILATD+FDFLIGLIF+E 
Subjt:  MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTRRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNE-

Query:  -TAATASAAGNLAESETMSIP
         TAA+ASAA  L ESETMSIP
Subjt:  -TAATASAAGNLAESETMSIP

XP_004146566.1 nuclear transcription factor Y subunit C-3 [Cucumis sativus]1.4e-5192.37Show/hide
Query:  MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTRRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNET
        MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELT+RSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNET
Subjt:  MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTRRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNET

Query:  AATASAAGNLAESETMSI
         AT +A G+L ESET+S+
Subjt:  AATASAAGNLAESETMSI

XP_008452022.1 PREDICTED: nuclear transcription factor Y subunit C-1-like [Cucumis melo]7.0e-5191.53Show/hide
Query:  MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTRRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNET
        MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELT+RSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNET
Subjt:  MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTRRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNET

Query:  AATASAAGNLAESETMSI
        AAT   AG++ ESE +S+
Subjt:  AATASAAGNLAESETMSI

XP_023552994.1 nuclear transcription factor Y subunit C-4-like [Cucurbita pepo subsp. pepo]3.2e-5190.83Show/hide
Query:  MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTRRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNET
        MRQAGAYSGV YWKTGPHSLPLARIKKIMKKSGE+VKMIS EAPIVFSKACELFIEELT+RSWMIAMQSKKRMLHKEDVASAILATD+FDFLIGLIF+ET
Subjt:  MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTRRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNET

Query:  AA-TASAAGNLAESETMSIP
            ASAAG+LAESETMSIP
Subjt:  AA-TASAAGNLAESETMSIP

XP_038877432.1 nuclear transcription factor Y subunit C-1-like [Benincasa hispida]5.7e-5392.62Show/hide
Query:  MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTRRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNET
        MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELT+RSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNET
Subjt:  MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTRRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNET

Query:  A---ATASAAGNLAESETMSIP
        A   A A+A G+LAESE MSIP
Subjt:  A---ATASAAGNLAESETMSIP

TrEMBL top hitse value%identityAlignment
A0A0A0KZN6 CBFD_NFYB_HMF domain-containing protein6.9e-5292.37Show/hide
Query:  MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTRRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNET
        MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELT+RSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNET
Subjt:  MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTRRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNET

Query:  AATASAAGNLAESETMSI
         AT +A G+L ESET+S+
Subjt:  AATASAAGNLAESETMSI

A0A1S3BSA0 nuclear transcription factor Y subunit C-1-like3.4e-5191.53Show/hide
Query:  MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTRRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNET
        MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELT+RSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNET
Subjt:  MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTRRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNET

Query:  AATASAAGNLAESETMSI
        AAT   AG++ ESE +S+
Subjt:  AATASAAGNLAESETMSI

A0A5A7TSI3 Nuclear transcription factor Y subunit C-1-like3.4e-5191.53Show/hide
Query:  MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTRRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNET
        MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELT+RSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNET
Subjt:  MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTRRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNET

Query:  AATASAAGNLAESETMSI
        AAT   AG++ ESE +S+
Subjt:  AATASAAGNLAESETMSI

A0A6J1EZM2 nuclear transcription factor Y subunit C-4-like5.8e-5189.26Show/hide
Query:  MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTRRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNE-
        MRQAGAYSGV YWKTGPHSLPLARIKKIMKKSGE+VKMIS EAPIVFSKACELF+EELT+RSWMIAMQSKKRMLHKEDVASAILATD+FDFLIGLIF+E 
Subjt:  MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTRRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNE-

Query:  -TAATASAAGNLAESETMSIP
         TAA+ASAA  L ESETMSIP
Subjt:  -TAATASAAGNLAESETMSIP

A0A6J1J883 nuclear transcription factor Y subunit C-4-like9.9e-5187.8Show/hide
Query:  MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTRRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNET
        MRQAGAYSGV YWKTGPHSLPLARIKKIMKKSGE+VKMIS EAPIVFSKACELFIEELT+RSWMIAM SKKRMLHKEDVASAILATD+FDFLIGLIF+ET
Subjt:  MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTRRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNET

Query:  ----AATASAAGNLAESETMSIP
            +A+ASAAG+L ESETMSIP
Subjt:  ----AATASAAGNLAESETMSIP

SwissProt top hitse value%identityAlignment
A6BLW4 Nuclear transcription factor Y subunit C-23.5e-2161.9Show/hide
Query:  HSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTRRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNETA
        H LPLARIKKIM K+ E+V+MIS EAP++F+KACELFI ELT RSW+ A ++K+R L + DVA+AI  TDVFDFL+ ++  E A
Subjt:  HSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTRRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNETA

Q655V5 Nuclear transcription factor Y subunit C-41.0e-2060.76Show/hide
Query:  HSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTRRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLI
        HSLPLARIKKIM K+ E+V+MIS EAP++F+KACE+FI ELT RSWM   ++K+R L K D+A+AI  TD++DFL+ ++
Subjt:  HSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTRRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLI

Q9FMV5 Nuclear transcription factor Y subunit C-44.2e-2251.38Show/hide
Query:  HSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTRRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLI------FNETAATASAAGNLA
        H LPLARIKKIM K+ E+V+MIS EAPI+F+KACELFI ELT RSW+ A ++K+R L K D+A+AI  TD+FDFL+ ++        E AA+A   G + 
Subjt:  HSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTRRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLI------FNETAATASAAGNLA

Query:  ESETMSIPF
              +P+
Subjt:  ESETMSIPF

Q9SMP0 Nuclear transcription factor Y subunit C-16.0e-2163.29Show/hide
Query:  HSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTRRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLI
        H LPLARIKKIM K+ E+V+MIS EAPI+F+KACELFI ELT RSW+ A ++K+R L K D+A+AI  TD+FDFL+ ++
Subjt:  HSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTRRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLI

Q9XE33 Nuclear transcription factor Y subunit C-67.9e-2154.26Show/hide
Query:  HSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTRRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNETAATASAAGNLA
        H+LPLARIKKIM K+ E+V+MI+ EAP+VF++ACE+FI ELT R W  A ++K+R L K D+A+AI  T+VFDFL+ ++  + A  A AA  +A
Subjt:  HSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTRRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNETAATASAAGNLA

Arabidopsis top hitse value%identityAlignment
AT1G54830.1 nuclear factor Y, subunit C31.2e-2153.06Show/hide
Query:  HSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTRRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNETAATASAAGNLAESET
        HSLPLARIKKIM K+ E+V+MIS EAP+VF++ACE+FI ELT RSW    ++K+R L K D+A+A+  TD+FDFL+ ++  E        G  AE+ T
Subjt:  HSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTRRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNETAATASAAGNLAESET

AT1G54830.2 nuclear factor Y, subunit C31.2e-2153.06Show/hide
Query:  HSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTRRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNETAATASAAGNLAESET
        HSLPLARIKKIM K+ E+V+MIS EAP+VF++ACE+FI ELT RSW    ++K+R L K D+A+A+  TD+FDFL+ ++  E        G  AE+ T
Subjt:  HSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTRRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNETAATASAAGNLAESET

AT3G48590.1 nuclear factor Y, subunit C14.3e-2263.29Show/hide
Query:  HSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTRRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLI
        H LPLARIKKIM K+ E+V+MIS EAPI+F+KACELFI ELT RSW+ A ++K+R L K D+A+AI  TD+FDFL+ ++
Subjt:  HSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTRRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLI

AT5G63470.1 nuclear factor Y, subunit C43.0e-2351.38Show/hide
Query:  HSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTRRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLI------FNETAATASAAGNLA
        H LPLARIKKIM K+ E+V+MIS EAPI+F+KACELFI ELT RSW+ A ++K+R L K D+A+AI  TD+FDFL+ ++        E AA+A   G + 
Subjt:  HSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTRRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLI------FNETAATASAAGNLA

Query:  ESETMSIPF
              +P+
Subjt:  ESETMSIPF

AT5G63470.2 nuclear factor Y, subunit C43.0e-2351.38Show/hide
Query:  HSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTRRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLI------FNETAATASAAGNLA
        H LPLARIKKIM K+ E+V+MIS EAPI+F+KACELFI ELT RSW+ A ++K+R L K D+A+AI  TD+FDFL+ ++        E AA+A   G + 
Subjt:  HSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTRRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLI------FNETAATASAAGNLA

Query:  ESETMSIPF
              +P+
Subjt:  ESETMSIPF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGCAAGCGGGAGCATATTCCGGCGTGATGTACTGGAAGACAGGGCCGCACTCACTGCCTTTGGCGAGGATAAAGAAGATCATGAAGAAATCCGGAGAGGAGGTGAA
GATGATCTCCGGCGAGGCTCCGATCGTTTTCTCGAAGGCGTGTGAACTGTTCATCGAAGAATTGACGAGGAGATCGTGGATGATTGCGATGCAGAGCAAGAAGAGGATGC
TTCACAAAGAGGATGTGGCTTCCGCCATTTTGGCCACTGATGTTTTCGATTTTCTGATCGGATTGATCTTCAATGAAACCGCCGCCACCGCCTCCGCCGCCGGAAACCTT
GCTGAAAGTGAAACTATGTCGATACCTTTCTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGGCAAGCGGGAGCATATTCCGGCGTGATGTACTGGAAGACAGGGCCGCACTCACTGCCTTTGGCGAGGATAAAGAAGATCATGAAGAAATCCGGAGAGGAGGTGAA
GATGATCTCCGGCGAGGCTCCGATCGTTTTCTCGAAGGCGTGTGAACTGTTCATCGAAGAATTGACGAGGAGATCGTGGATGATTGCGATGCAGAGCAAGAAGAGGATGC
TTCACAAAGAGGATGTGGCTTCCGCCATTTTGGCCACTGATGTTTTCGATTTTCTGATCGGATTGATCTTCAATGAAACCGCCGCCACCGCCTCCGCCGCCGGAAACCTT
GCTGAAAGTGAAACTATGTCGATACCTTTCTGA
Protein sequenceShow/hide protein sequence
MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTRRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNETAATASAAGNL
AESETMSIPF