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HG10002707 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10002707
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationChr11:10314092..10314403
RNA-Seq ExpressionHG10002707
SyntenyHG10002707
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
WP_217833202.1 hypothetical protein, partial [Synechococcus sp. PCC 7002]2.9e-1352.7Show/hide
Query:  AANSCIRCGEPHGFKMCLYNPQSVCFIKNNSYSKTYNPRWGNHPKFLWGGTQQQIVEQTGGQPTQSNRNTPLSF
        A+ SC++CGE H + MC YNPQSVC+++NN Y+KTYNP W NH  F WG  QQ    QT G   Q  R  P  F
Subjt:  AANSCIRCGEPHGFKMCLYNPQSVCFIKNNSYSKTYNPRWGNHPKFLWGGTQQQIVEQTGGQPTQSNRNTPLSF

XP_038874978.1 putative uncharacterized protein DDB_G0279653 [Benincasa hispida]1.4e-1041.05Show/hide
Query:  VNQAANSCIRCGEPHGFKMCLYNPQSVCFIKNNSYSKTYNPRWGNHPKFLWGGTQQQIVEQTGGQPTQSNRNTPLSFLVMQERNNINQRIVDHNK
        V  AA +C++ G  H  +MC  NPQSV  I+NN YS TYNP W NHP F WGG   Q  +         NR  P SF    +  N + ++  HN+
Subjt:  VNQAANSCIRCGEPHGFKMCLYNPQSVCFIKNNSYSKTYNPRWGNHPKFLWGGTQQQIVEQTGGQPTQSNRNTPLSFLVMQERNNINQRIVDHNK

XP_038880527.1 uncharacterized protein LOC120072192 [Benincasa hispida]3.0e-1056.36Show/hide
Query:  QAANSCIRCGEPHGFKMCLYNPQSVCFIKNNSYSKTYNPRWGNHPKFLWGGTQQQ
        Q   +C+ CG+ H +  C  NPQSVCFIKNN +S TYNP W NHP F W G  QQ
Subjt:  QAANSCIRCGEPHGFKMCLYNPQSVCFIKNNSYSKTYNPRWGNHPKFLWGGTQQQ

XP_038882276.1 uncharacterized protein LOC120073506 [Benincasa hispida]2.6e-0957.69Show/hide
Query:  SCIRCGEPHGFKMCLYNPQSVCFIKNNSYSKTYNPRWGNHPKFLW-GGTQQQ
        +C+ CG+ H +  CL N QSVCFIKNN +S TYNP W NHP F W  G QQ+
Subjt:  SCIRCGEPHGFKMCLYNPQSVCFIKNNSYSKTYNPRWGNHPKFLW-GGTQQQ

XP_038902511.1 uncharacterized protein LOC120089170 [Benincasa hispida]1.2e-0943.16Show/hide
Query:  AANSCIRCGEPHGFKMCLYNPQSVCFIKNNSYSKTYNPRWGNHPKFLWGGTQQQIVEQTGGQPTQSNRNTPLSFLVMQERNNINQRIVDHNKSRE
        A  SC +CGE H  +MC  NPQ+V  I+NN Y+ TYNP W NHP F WGG   Q   Q   Q    NR  P  F        +NQ    H++SR+
Subjt:  AANSCIRCGEPHGFKMCLYNPQSVCFIKNNSYSKTYNPRWGNHPKFLWGGTQQQIVEQTGGQPTQSNRNTPLSFLVMQERNNINQRIVDHNKSRE

TrEMBL top hitse value%identityAlignment
A0A1S3ZQT8 uncharacterized protein LOC1077894313.1e-0853.7Show/hide
Query:  CIRCGEPHGFKMCLYNPQSVCFIKN------NSYSKTYNPRWGNHPKFLWGGTQ
        C  CGE H   +C  NPQSVCF+ N      N Y  TYNP W NHP F WGG Q
Subjt:  CIRCGEPHGFKMCLYNPQSVCFIKN------NSYSKTYNPRWGNHPKFLWGGTQ

A0A1S4BDS7 uncharacterized protein LOC1078072252.6e-0747.54Show/hide
Query:  VNQAANSCIRCGEPHGFKMCLYNPQSVCFIKN------NSYSKTYNPRWGNHPKFLWGGTQ
        V Q    C  CGE H   +C  NP+SV F+ N      N Y  TYNP W NHP F WGG Q
Subjt:  VNQAANSCIRCGEPHGFKMCLYNPQSVCFIKN------NSYSKTYNPRWGNHPKFLWGGTQ

A0A1U7XDR2 uncharacterized protein LOC1042377042.0e-0732.38Show/hide
Query:  VNQAANSCIRCGEPHGFKMCLYNPQSVCFI---------KNNSYSKTYNPRWGNHPKFLWGGTQQQIVEQTGGQPTQSNRNTPLSFLVMQERNNI-NQRI
        V Q +  C  CGE H   +C  NP+S+ ++         ++  Y  TYNP W NHP F WGG Q    +    QP Q  +    S + M ++  I NQ++
Subjt:  VNQAANSCIRCGEPHGFKMCLYNPQSVCFI---------KNNSYSKTYNPRWGNHPKFLWGGTQQQIVEQTGGQPTQSNRNTPLSFLVMQERNNI-NQRI

Query:  VDHNK
        +  N+
Subjt:  VDHNK

A0A6J1EEI2 uncharacterized protein LOC1114333941.2e-0746.88Show/hide
Query:  MVNQ-AANSCIRCGEPHGFKMCLYNPQSVCFI---------KNNSYSKTYNPRWGNHPKFLWGG
        ++NQ AA SC+ CGE H F  C  NP S+ ++         KNN +S TYNP W NHP F W G
Subjt:  MVNQ-AANSCIRCGEPHGFKMCLYNPQSVCFI---------KNNSYSKTYNPRWGNHPKFLWGG

U5CZQ0 Uncharacterized protein5.2e-0839.29Show/hide
Query:  VNQAANSCIRCGEPHGFKMCLYNPQSVCFI-------KNNSYSKTYNPRWGNHPKFLWGGTQQQIVEQTGGQPTQSNRNTPLSF
        + +A  SC+ CG+ H F+ C  NP SVC++        NN YS +YNP W +HP F WGG   Q    +G Q  Q  ++ P  F
Subjt:  VNQAANSCIRCGEPHGFKMCLYNPQSVCFI-------KNNSYSKTYNPRWGNHPKFLWGGTQQQIVEQTGGQPTQSNRNTPLSF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGAATCAGGCTGCTAATAGTTGCATTAGATGCGGCGAACCGCATGGATTCAAAATGTGCCTCTATAACCCTCAGTCCGTTTGCTTCATAAAGAACAACTCCTACTC
TAAAACATACAACCCTAGATGGGGAAACCATCCAAAATTCTTATGGGGTGGTACTCAACAACAGATTGTAGAACAAACAGGAGGTCAACCAACGCAAAGCAATCGAAACA
CTCCACTAAGTTTTCTGGTAATGCAGGAACGCAACAACATCAATCAACGCATAGTAGACCACAACAAGAGCCGGGAACGAGCAGTAACTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTGAATCAGGCTGCTAATAGTTGCATTAGATGCGGCGAACCGCATGGATTCAAAATGTGCCTCTATAACCCTCAGTCCGTTTGCTTCATAAAGAACAACTCCTACTC
TAAAACATACAACCCTAGATGGGGAAACCATCCAAAATTCTTATGGGGTGGTACTCAACAACAGATTGTAGAACAAACAGGAGGTCAACCAACGCAAAGCAATCGAAACA
CTCCACTAAGTTTTCTGGTAATGCAGGAACGCAACAACATCAATCAACGCATAGTAGACCACAACAAGAGCCGGGAACGAGCAGTAACTTAG
Protein sequenceShow/hide protein sequence
MVNQAANSCIRCGEPHGFKMCLYNPQSVCFIKNNSYSKTYNPRWGNHPKFLWGGTQQQIVEQTGGQPTQSNRNTPLSFLVMQERNNINQRIVDHNKSRERAVT