; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10002727 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10002727
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionDNA ligase
Genome locationChr11:10860810..10861217
RNA-Seq ExpressionHG10002727
SyntenyHG10002727
Gene Ontology termsGO:0006260 - DNA replication (biological process)
GO:0006266 - DNA ligation (biological process)
GO:0006281 - DNA repair (biological process)
GO:0006310 - DNA recombination (biological process)
GO:0071897 - DNA biosynthetic process (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003910 - DNA ligase (ATP) activity (molecular function)
GO:0005524 - ATP binding (molecular function)
InterPro domainsIPR012309 - DNA ligase, ATP-dependent, C-terminal
IPR012340 - Nucleic acid-binding, OB-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0064112.1 DNA ligase 1 isoform X2 [Cucumis melo var. makuwa]2.4e-4793.07Show/hide
Query:  MKEFFSEDKIVCKKPAYYQTAEVPDMWFVPQVVWEIRGADLTVSPVHQAAVGLVHPSRGISIRFPRFIRLVPDRNPEECSTATDIAEMFNSQTRKMDVAS
        MKEFFS DKI+CKKP YY+TAEVPDMWF+PQVVWEIRGADLTVSPVHQAAVGLVHP RGISIRFPRFIR VPDRNPEECSTATDIAEMFNSQTRKMDVAS
Subjt:  MKEFFSEDKIVCKKPAYYQTAEVPDMWFVPQVVWEIRGADLTVSPVHQAAVGLVHPSRGISIRFPRFIRLVPDRNPEECSTATDIAEMFNSQTRKMDVAS

Query:  G
        G
Subjt:  G

XP_008444061.1 PREDICTED: DNA ligase 1 isoform X1 [Cucumis melo]6.3e-4891.26Show/hide
Query:  VQMKEFFSEDKIVCKKPAYYQTAEVPDMWFVPQVVWEIRGADLTVSPVHQAAVGLVHPSRGISIRFPRFIRLVPDRNPEECSTATDIAEMFNSQTRKMDV
        ++MKEFFS DKI+CKKP YY+TAEVPDMWF+PQVVWEIRGADLTVSPVHQAAVGLVHP RGISIRFPRFIR VPDRNPEECSTATDIAEMFNSQTRKMDV
Subjt:  VQMKEFFSEDKIVCKKPAYYQTAEVPDMWFVPQVVWEIRGADLTVSPVHQAAVGLVHPSRGISIRFPRFIRLVPDRNPEECSTATDIAEMFNSQTRKMDV

Query:  ASG
        ASG
Subjt:  ASG

XP_008444062.1 PREDICTED: DNA ligase 1 isoform X2 [Cucumis melo]6.3e-4891.26Show/hide
Query:  VQMKEFFSEDKIVCKKPAYYQTAEVPDMWFVPQVVWEIRGADLTVSPVHQAAVGLVHPSRGISIRFPRFIRLVPDRNPEECSTATDIAEMFNSQTRKMDV
        ++MKEFFS DKI+CKKP YY+TAEVPDMWF+PQVVWEIRGADLTVSPVHQAAVGLVHP RGISIRFPRFIR VPDRNPEECSTATDIAEMFNSQTRKMDV
Subjt:  VQMKEFFSEDKIVCKKPAYYQTAEVPDMWFVPQVVWEIRGADLTVSPVHQAAVGLVHPSRGISIRFPRFIRLVPDRNPEECSTATDIAEMFNSQTRKMDV

Query:  ASG
        ASG
Subjt:  ASG

XP_022158502.1 DNA ligase 6-like isoform X2 [Momordica charantia]1.4e-4486.67Show/hide
Query:  VQMKEFFSEDKIVCKKPAYYQTAEVPDMWFVPQVVWEIRGADLTVSPVHQAAVGLVHPSRGISIRFPRFIRLVPDRNPEECSTATDIAEMFNSQTRKMD-
        ++MKEFFS DKI+CKKP YY+TAE PDMWF+P+VVWEIRGADLTVSPVHQAAVGLVHPSRGISIRFPRFIR V DRNPEECSTATDI  MFNSQTRKMD 
Subjt:  VQMKEFFSEDKIVCKKPAYYQTAEVPDMWFVPQVVWEIRGADLTVSPVHQAAVGLVHPSRGISIRFPRFIRLVPDRNPEECSTATDIAEMFNSQTRKMD-

Query:  VASGD
        VASGD
Subjt:  VASGD

XP_038878216.1 DNA ligase 6-like isoform X1 [Benincasa hispida]2.8e-4891.35Show/hide
Query:  VQMKEFFSEDKIVCKKPAYYQTAEVPDMWFVPQVVWEIRGADLTVSPVHQAAVGLVHPSRGISIRFPRFIRLVPDRNPEECSTATDIAEMFNSQTRKMDV
        ++MKEFFS D I+CKKPAYYQTAEVPDMWF+PQ VWEIRGADLTVSPVHQAAVGLVHPSRGISIRFPRFIR VPDRNPEECSTA DIAEMFNSQTRKMDV
Subjt:  VQMKEFFSEDKIVCKKPAYYQTAEVPDMWFVPQVVWEIRGADLTVSPVHQAAVGLVHPSRGISIRFPRFIRLVPDRNPEECSTATDIAEMFNSQTRKMDV

Query:  ASGD
        ASGD
Subjt:  ASGD

TrEMBL top hitse value%identityAlignment
A0A1S3B9K2 DNA ligase3.0e-4891.26Show/hide
Query:  VQMKEFFSEDKIVCKKPAYYQTAEVPDMWFVPQVVWEIRGADLTVSPVHQAAVGLVHPSRGISIRFPRFIRLVPDRNPEECSTATDIAEMFNSQTRKMDV
        ++MKEFFS DKI+CKKP YY+TAEVPDMWF+PQVVWEIRGADLTVSPVHQAAVGLVHP RGISIRFPRFIR VPDRNPEECSTATDIAEMFNSQTRKMDV
Subjt:  VQMKEFFSEDKIVCKKPAYYQTAEVPDMWFVPQVVWEIRGADLTVSPVHQAAVGLVHPSRGISIRFPRFIRLVPDRNPEECSTATDIAEMFNSQTRKMDV

Query:  ASG
        ASG
Subjt:  ASG

A0A1S3BA94 DNA ligase3.0e-4891.26Show/hide
Query:  VQMKEFFSEDKIVCKKPAYYQTAEVPDMWFVPQVVWEIRGADLTVSPVHQAAVGLVHPSRGISIRFPRFIRLVPDRNPEECSTATDIAEMFNSQTRKMDV
        ++MKEFFS DKI+CKKP YY+TAEVPDMWF+PQVVWEIRGADLTVSPVHQAAVGLVHP RGISIRFPRFIR VPDRNPEECSTATDIAEMFNSQTRKMDV
Subjt:  VQMKEFFSEDKIVCKKPAYYQTAEVPDMWFVPQVVWEIRGADLTVSPVHQAAVGLVHPSRGISIRFPRFIRLVPDRNPEECSTATDIAEMFNSQTRKMDV

Query:  ASG
        ASG
Subjt:  ASG

A0A5D3DXM0 DNA ligase 1 isoform X21.2e-4793.07Show/hide
Query:  MKEFFSEDKIVCKKPAYYQTAEVPDMWFVPQVVWEIRGADLTVSPVHQAAVGLVHPSRGISIRFPRFIRLVPDRNPEECSTATDIAEMFNSQTRKMDVAS
        MKEFFS DKI+CKKP YY+TAEVPDMWF+PQVVWEIRGADLTVSPVHQAAVGLVHP RGISIRFPRFIR VPDRNPEECSTATDIAEMFNSQTRKMDVAS
Subjt:  MKEFFSEDKIVCKKPAYYQTAEVPDMWFVPQVVWEIRGADLTVSPVHQAAVGLVHPSRGISIRFPRFIRLVPDRNPEECSTATDIAEMFNSQTRKMDVAS

Query:  G
        G
Subjt:  G

A0A6J1DXE4 DNA ligase7.0e-4586.67Show/hide
Query:  VQMKEFFSEDKIVCKKPAYYQTAEVPDMWFVPQVVWEIRGADLTVSPVHQAAVGLVHPSRGISIRFPRFIRLVPDRNPEECSTATDIAEMFNSQTRKMD-
        ++MKEFFS DKI+CKKP YY+TAE PDMWF+P+VVWEIRGADLTVSPVHQAAVGLVHPSRGISIRFPRFIR V DRNPEECSTATDI  MFNSQTRKMD 
Subjt:  VQMKEFFSEDKIVCKKPAYYQTAEVPDMWFVPQVVWEIRGADLTVSPVHQAAVGLVHPSRGISIRFPRFIRLVPDRNPEECSTATDIAEMFNSQTRKMD-

Query:  VASGD
        VASGD
Subjt:  VASGD

A0A6J1E130 DNA ligase7.0e-4586.67Show/hide
Query:  VQMKEFFSEDKIVCKKPAYYQTAEVPDMWFVPQVVWEIRGADLTVSPVHQAAVGLVHPSRGISIRFPRFIRLVPDRNPEECSTATDIAEMFNSQTRKMD-
        ++MKEFFS DKI+CKKP YY+TAE PDMWF+P+VVWEIRGADLTVSPVHQAAVGLVHPSRGISIRFPRFIR V DRNPEECSTATDI  MFNSQTRKMD 
Subjt:  VQMKEFFSEDKIVCKKPAYYQTAEVPDMWFVPQVVWEIRGADLTVSPVHQAAVGLVHPSRGISIRFPRFIRLVPDRNPEECSTATDIAEMFNSQTRKMD-

Query:  VASGD
        VASGD
Subjt:  VASGD

SwissProt top hitse value%identityAlignment
F4HPZ9 DNA ligase 65.3e-4275.49Show/hide
Query:  VQMKEFFSEDKIVCKKPAYYQTAEVPDMWFVPQVVWEIRGADLTVSPVHQAAVGLVHPSRGISIRFPRFIRLVPDRNPEECSTATDIAEMFNSQTRKMDV
        ++MKEF+SEDKI+ KKP YY+T E PDMWF  +VVWEIRGAD TVSPVH A++GLVHPSRGIS+RFPRFI  V DRNPEECSTATDIAEMF++QTRKM++
Subjt:  VQMKEFFSEDKIVCKKPAYYQTAEVPDMWFVPQVVWEIRGADLTVSPVHQAAVGLVHPSRGISIRFPRFIRLVPDRNPEECSTATDIAEMFNSQTRKMDV

Query:  AS
         S
Subjt:  AS

P51892 DNA ligase 12.4e-1841.84Show/hide
Query:  FSEDKIVCKKPAYYQ--TAEVPDMWFVPQVVWEIRGADLTVSPVHQAAVGLVHPSRGISIRFPRFIRLVPDRNPEECSTATDIAEMFNSQTRKMDVAS
        F +D ++    +YY+  +A  PD WF P  VWE++ ADL++SPVH+AA+GLV   +GIS+RFPRF+R+  D+ PEE + +  +A+++  Q +  + +S
Subjt:  FSEDKIVCKKPAYYQ--TAEVPDMWFVPQVVWEIRGADLTVSPVHQAAVGLVHPSRGISIRFPRFIRLVPDRNPEECSTATDIAEMFNSQTRKMDVAS

Q42572 DNA ligase 11.8e-1844.19Show/hide
Query:  KIVCKKPAYYQTAEV--PDMWFVPQVVWEIRGADLTVSPVHQAAVGLVHPSRGISIRFPRFIRLVPDRNPEECSTATDIAEMFNSQ
        +++     YY+  +   PD+WF P  VWE++ ADLT+SPVH+AA G+V P +GIS+RFPR +R+  D+ PEE +++  IA+++ +Q
Subjt:  KIVCKKPAYYQTAEV--PDMWFVPQVVWEIRGADLTVSPVHQAAVGLVHPSRGISIRFPRFIRLVPDRNPEECSTATDIAEMFNSQ

Q869E1 DNA ligase 11.2e-1745.24Show/hide
Query:  PDMWFVPQVVWEIRGADLTVSPVHQAAVGLVHPSRGISIRFPRFIRLVPDRNPEECSTATDIAEMF-----NSQTRKMDVASGD
        PD+WF P  VWE+  ADL++SPVH AA G++ P++GI++RFPRFIR+ PD++PE+ +++  + +M+     NSQ+ K++    D
Subjt:  PDMWFVPQVVWEIRGADLTVSPVHQAAVGLVHPSRGISIRFPRFIRLVPDRNPEECSTATDIAEMF-----NSQTRKMDVASGD

Q9W1H4 DNA ligase 12.0e-1746.15Show/hide
Query:  EFFSEDKIVCKKPAY-YQTAEVPDMWFVPQVVWEIRGADLTVSPVHQAAVGLVHPSRGISIRFPRFIRLVPDRNPEECSTATDIAEMFNSQ
        EF  +      K  Y Y  +  PD WF P  VWE++ ADL++SP+H+AA+G+V   RGIS+RFPRFIR+  D+N E  + A  +A M+ SQ
Subjt:  EFFSEDKIVCKKPAY-YQTAEVPDMWFVPQVVWEIRGADLTVSPVHQAAVGLVHPSRGISIRFPRFIRLVPDRNPEECSTATDIAEMFNSQ

Arabidopsis top hitse value%identityAlignment
AT1G08130.1 DNA ligase 11.3e-1944.19Show/hide
Query:  KIVCKKPAYYQTAEV--PDMWFVPQVVWEIRGADLTVSPVHQAAVGLVHPSRGISIRFPRFIRLVPDRNPEECSTATDIAEMFNSQ
        +++     YY+  +   PD+WF P  VWE++ ADLT+SPVH+AA G+V P +GIS+RFPR +R+  D+ PEE +++  IA+++ +Q
Subjt:  KIVCKKPAYYQTAEV--PDMWFVPQVVWEIRGADLTVSPVHQAAVGLVHPSRGISIRFPRFIRLVPDRNPEECSTATDIAEMFNSQ

AT1G49250.1 ATP-dependent DNA ligase1.6e-2048.84Show/hide
Query:  KIVCKKPAYYQTAE--VPDMWFVPQVVWEIRGADLTVSPVHQAAVGLVHPSRGISIRFPRFIRLVPDRNPEECSTATDIAEMFNSQ
        K++     YYQ      PD+W  P  VWE++ ADLTVSPV++ A+G+V P +GIS+RFPR +R+  D+NPEE +T+  IAEM+ +Q
Subjt:  KIVCKKPAYYQTAE--VPDMWFVPQVVWEIRGADLTVSPVHQAAVGLVHPSRGISIRFPRFIRLVPDRNPEECSTATDIAEMFNSQ

AT1G66730.1 DNA LIGASE 63.8e-4375.49Show/hide
Query:  VQMKEFFSEDKIVCKKPAYYQTAEVPDMWFVPQVVWEIRGADLTVSPVHQAAVGLVHPSRGISIRFPRFIRLVPDRNPEECSTATDIAEMFNSQTRKMDV
        ++MKEF+SEDKI+ KKP YY+T E PDMWF  +VVWEIRGAD TVSPVH A++GLVHPSRGIS+RFPRFI  V DRNPEECSTATDIAEMF++QTRKM++
Subjt:  VQMKEFFSEDKIVCKKPAYYQTAEVPDMWFVPQVVWEIRGADLTVSPVHQAAVGLVHPSRGISIRFPRFIRLVPDRNPEECSTATDIAEMFNSQTRKMDV

Query:  AS
         S
Subjt:  AS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATGATTGCCAGCATATTTCTGTTTACACGCTGCTTGCTTTTGATGGGTGCTGCTTGCTTTTGATAGTGGTATGCTTCTTTTTATTGAAAGTGCAGATGAAAGAATT
CTTTTCTGAGGATAAAATTGTGTGTAAAAAGCCAGCTTACTATCAAACTGCCGAGGTTCCTGATATGTGGTTCGTGCCACAAGTTGTTTGGGAAATTAGAGGTGCAGACT
TAACAGTGTCACCAGTTCACCAGGCTGCTGTAGGTTTAGTTCATCCTTCTCGTGGCATCTCAATCAGGTTTCCGAGATTTATTCGTTTGGTTCCTGATAGAAATCCAGAA
GAATGTAGCACGGCTACAGATATAGCGGAAATGTTTAATTCTCAGACAAGGAAAATGGATGTTGCATCAGGAGATTGA
mRNA sequenceShow/hide mRNA sequence
ATGAATGATTGCCAGCATATTTCTGTTTACACGCTGCTTGCTTTTGATGGGTGCTGCTTGCTTTTGATAGTGGTATGCTTCTTTTTATTGAAAGTGCAGATGAAAGAATT
CTTTTCTGAGGATAAAATTGTGTGTAAAAAGCCAGCTTACTATCAAACTGCCGAGGTTCCTGATATGTGGTTCGTGCCACAAGTTGTTTGGGAAATTAGAGGTGCAGACT
TAACAGTGTCACCAGTTCACCAGGCTGCTGTAGGTTTAGTTCATCCTTCTCGTGGCATCTCAATCAGGTTTCCGAGATTTATTCGTTTGGTTCCTGATAGAAATCCAGAA
GAATGTAGCACGGCTACAGATATAGCGGAAATGTTTAATTCTCAGACAAGGAAAATGGATGTTGCATCAGGAGATTGA
Protein sequenceShow/hide protein sequence
MNDCQHISVYTLLAFDGCCLLLIVVCFFLLKVQMKEFFSEDKIVCKKPAYYQTAEVPDMWFVPQVVWEIRGADLTVSPVHQAAVGLVHPSRGISIRFPRFIRLVPDRNPE
ECSTATDIAEMFNSQTRKMDVASGD