; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10002728 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10002728
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionDNA ligase
Genome locationChr11:10863391..10876985
RNA-Seq ExpressionHG10002728
SyntenyHG10002728
Gene Ontology termsGO:0006260 - DNA replication (biological process)
GO:0006266 - DNA ligation (biological process)
GO:0006281 - DNA repair (biological process)
GO:0006310 - DNA recombination (biological process)
GO:0071897 - DNA biosynthetic process (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003910 - DNA ligase (ATP) activity (molecular function)
GO:0005524 - ATP binding (molecular function)
InterPro domainsIPR012310 - DNA ligase, ATP-dependent, central


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0064109.1 DNA ligase 1 isoform X3 [Cucumis melo var. makuwa]2.1e-5281.1Show/hide
Query:  ELLFKFPPLSKLYDLKDFFGDGRLGYFEYAKEITIEKDDACLNCESTLIKLNCFLGDAFQSSCEGIMVKSLDADAGYFPSKRSDAWLKVKRDYLEGLNDS
        E L   P   +   LKD FGDGRLGYFEYAKEI+IEKDDACLNCESTLIKLNCFLGDAF SSCEGIMVKSLD DAGYFPSKR+D WLKVKRDYLEGLNDS
Subjt:  ELLFKFPPLSKLYDLKDFFGDGRLGYFEYAKEITIEKDDACLNCESTLIKLNCFLGDAFQSSCEGIMVKSLDADAGYFPSKRSDAWLKVKRDYLEGLNDS

Query:  LDLVPIGAWHGNGRKVGWHILDPILTA
        LDLVPIGAWHGNGRK GW    P L A
Subjt:  LDLVPIGAWHGNGRKVGWHILDPILTA

TYK28629.1 DNA ligase 1 isoform X3 [Cucumis melo var. makuwa]2.1e-5273.1Show/hide
Query:  PLAPDISDDLKQESQFGFELLFKFPPLSKLYDLKDFFGDGRLGYFEYAKEITIEKDDACLNCESTLIKLNCFLGDAFQSSCEGIMVKSLDADAGYFPSKR
        PL   ++D L +        L   P   +   LKD FGDGRLGYFEYAKEI+IEKDDACLNCESTLIKLNCFLGDAF SSCEGIMVKSLD DAGYFPSKR
Subjt:  PLAPDISDDLKQESQFGFELLFKFPPLSKLYDLKDFFGDGRLGYFEYAKEITIEKDDACLNCESTLIKLNCFLGDAFQSSCEGIMVKSLDADAGYFPSKR

Query:  SDAWLKVKRDYLEGLNDSLDLVPIGAWHGNGRKVGWHILDPILTA
        +D WLKVKRDYLEGLNDSLDLVPIGAWHGNGRK GW    P L A
Subjt:  SDAWLKVKRDYLEGLNDSLDLVPIGAWHGNGRKVGWHILDPILTA

XP_008444061.1 PREDICTED: DNA ligase 1 isoform X1 [Cucumis melo]2.1e-5281.1Show/hide
Query:  ELLFKFPPLSKLYDLKDFFGDGRLGYFEYAKEITIEKDDACLNCESTLIKLNCFLGDAFQSSCEGIMVKSLDADAGYFPSKRSDAWLKVKRDYLEGLNDS
        E L   P   +   LKD FGDGRLGYFEYAKEI+IEKDDACLNCESTLIKLNCFLGDAF SSCEGIMVKSLD DAGYFPSKR+D WLKVKRDYLEGLNDS
Subjt:  ELLFKFPPLSKLYDLKDFFGDGRLGYFEYAKEITIEKDDACLNCESTLIKLNCFLGDAFQSSCEGIMVKSLDADAGYFPSKRSDAWLKVKRDYLEGLNDS

Query:  LDLVPIGAWHGNGRKVGWHILDPILTA
        LDLVPIGAWHGNGRK GW    P L A
Subjt:  LDLVPIGAWHGNGRKVGWHILDPILTA

XP_008444062.1 PREDICTED: DNA ligase 1 isoform X2 [Cucumis melo]2.1e-5281.1Show/hide
Query:  ELLFKFPPLSKLYDLKDFFGDGRLGYFEYAKEITIEKDDACLNCESTLIKLNCFLGDAFQSSCEGIMVKSLDADAGYFPSKRSDAWLKVKRDYLEGLNDS
        E L   P   +   LKD FGDGRLGYFEYAKEI+IEKDDACLNCESTLIKLNCFLGDAF SSCEGIMVKSLD DAGYFPSKR+D WLKVKRDYLEGLNDS
Subjt:  ELLFKFPPLSKLYDLKDFFGDGRLGYFEYAKEITIEKDDACLNCESTLIKLNCFLGDAFQSSCEGIMVKSLDADAGYFPSKRSDAWLKVKRDYLEGLNDS

Query:  LDLVPIGAWHGNGRKVGWHILDPILTA
        LDLVPIGAWHGNGRK GW    P L A
Subjt:  LDLVPIGAWHGNGRKVGWHILDPILTA

XP_008444063.1 PREDICTED: DNA ligase 1 isoform X3 [Cucumis melo]2.1e-5281.1Show/hide
Query:  ELLFKFPPLSKLYDLKDFFGDGRLGYFEYAKEITIEKDDACLNCESTLIKLNCFLGDAFQSSCEGIMVKSLDADAGYFPSKRSDAWLKVKRDYLEGLNDS
        E L   P   +   LKD FGDGRLGYFEYAKEI+IEKDDACLNCESTLIKLNCFLGDAF SSCEGIMVKSLD DAGYFPSKR+D WLKVKRDYLEGLNDS
Subjt:  ELLFKFPPLSKLYDLKDFFGDGRLGYFEYAKEITIEKDDACLNCESTLIKLNCFLGDAFQSSCEGIMVKSLDADAGYFPSKRSDAWLKVKRDYLEGLNDS

Query:  LDLVPIGAWHGNGRKVGWHILDPILTA
        LDLVPIGAWHGNGRK GW    P L A
Subjt:  LDLVPIGAWHGNGRKVGWHILDPILTA

TrEMBL top hitse value%identityAlignment
A0A1S3B9K2 DNA ligase1.0e-5281.1Show/hide
Query:  ELLFKFPPLSKLYDLKDFFGDGRLGYFEYAKEITIEKDDACLNCESTLIKLNCFLGDAFQSSCEGIMVKSLDADAGYFPSKRSDAWLKVKRDYLEGLNDS
        E L   P   +   LKD FGDGRLGYFEYAKEI+IEKDDACLNCESTLIKLNCFLGDAF SSCEGIMVKSLD DAGYFPSKR+D WLKVKRDYLEGLNDS
Subjt:  ELLFKFPPLSKLYDLKDFFGDGRLGYFEYAKEITIEKDDACLNCESTLIKLNCFLGDAFQSSCEGIMVKSLDADAGYFPSKRSDAWLKVKRDYLEGLNDS

Query:  LDLVPIGAWHGNGRKVGWHILDPILTA
        LDLVPIGAWHGNGRK GW    P L A
Subjt:  LDLVPIGAWHGNGRKVGWHILDPILTA

A0A1S3BA94 DNA ligase1.0e-5281.1Show/hide
Query:  ELLFKFPPLSKLYDLKDFFGDGRLGYFEYAKEITIEKDDACLNCESTLIKLNCFLGDAFQSSCEGIMVKSLDADAGYFPSKRSDAWLKVKRDYLEGLNDS
        E L   P   +   LKD FGDGRLGYFEYAKEI+IEKDDACLNCESTLIKLNCFLGDAF SSCEGIMVKSLD DAGYFPSKR+D WLKVKRDYLEGLNDS
Subjt:  ELLFKFPPLSKLYDLKDFFGDGRLGYFEYAKEITIEKDDACLNCESTLIKLNCFLGDAFQSSCEGIMVKSLDADAGYFPSKRSDAWLKVKRDYLEGLNDS

Query:  LDLVPIGAWHGNGRKVGWHILDPILTA
        LDLVPIGAWHGNGRK GW    P L A
Subjt:  LDLVPIGAWHGNGRKVGWHILDPILTA

A0A1S3BAB3 DNA ligase1.0e-5281.1Show/hide
Query:  ELLFKFPPLSKLYDLKDFFGDGRLGYFEYAKEITIEKDDACLNCESTLIKLNCFLGDAFQSSCEGIMVKSLDADAGYFPSKRSDAWLKVKRDYLEGLNDS
        E L   P   +   LKD FGDGRLGYFEYAKEI+IEKDDACLNCESTLIKLNCFLGDAF SSCEGIMVKSLD DAGYFPSKR+D WLKVKRDYLEGLNDS
Subjt:  ELLFKFPPLSKLYDLKDFFGDGRLGYFEYAKEITIEKDDACLNCESTLIKLNCFLGDAFQSSCEGIMVKSLDADAGYFPSKRSDAWLKVKRDYLEGLNDS

Query:  LDLVPIGAWHGNGRKVGWHILDPILTA
        LDLVPIGAWHGNGRK GW    P L A
Subjt:  LDLVPIGAWHGNGRKVGWHILDPILTA

A0A5A7VEZ9 DNA ligase1.0e-5281.1Show/hide
Query:  ELLFKFPPLSKLYDLKDFFGDGRLGYFEYAKEITIEKDDACLNCESTLIKLNCFLGDAFQSSCEGIMVKSLDADAGYFPSKRSDAWLKVKRDYLEGLNDS
        E L   P   +   LKD FGDGRLGYFEYAKEI+IEKDDACLNCESTLIKLNCFLGDAF SSCEGIMVKSLD DAGYFPSKR+D WLKVKRDYLEGLNDS
Subjt:  ELLFKFPPLSKLYDLKDFFGDGRLGYFEYAKEITIEKDDACLNCESTLIKLNCFLGDAFQSSCEGIMVKSLDADAGYFPSKRSDAWLKVKRDYLEGLNDS

Query:  LDLVPIGAWHGNGRKVGWHILDPILTA
        LDLVPIGAWHGNGRK GW    P L A
Subjt:  LDLVPIGAWHGNGRKVGWHILDPILTA

A0A5D3DZ11 DNA ligase 1 isoform X31.0e-5273.1Show/hide
Query:  PLAPDISDDLKQESQFGFELLFKFPPLSKLYDLKDFFGDGRLGYFEYAKEITIEKDDACLNCESTLIKLNCFLGDAFQSSCEGIMVKSLDADAGYFPSKR
        PL   ++D L +        L   P   +   LKD FGDGRLGYFEYAKEI+IEKDDACLNCESTLIKLNCFLGDAF SSCEGIMVKSLD DAGYFPSKR
Subjt:  PLAPDISDDLKQESQFGFELLFKFPPLSKLYDLKDFFGDGRLGYFEYAKEITIEKDDACLNCESTLIKLNCFLGDAFQSSCEGIMVKSLDADAGYFPSKR

Query:  SDAWLKVKRDYLEGLNDSLDLVPIGAWHGNGRKVGWHILDPILTA
        +D WLKVKRDYLEGLNDSLDLVPIGAWHGNGRK GW    P L A
Subjt:  SDAWLKVKRDYLEGLNDSLDLVPIGAWHGNGRKVGWHILDPILTA

SwissProt top hitse value%identityAlignment
F4HPZ9 DNA ligase 61.1e-3860.63Show/hide
Query:  ELLFKFPPLSKLYDLKDFFGDGRLGYFEYAKEITIEKDDACLNCESTLIKLNCFLGDAFQSSCEGIMVKSLDADAGYFPSKRSDAWLKVKRDYLEGLNDS
        E L   P   +   LK+ F + R GY EYAKEIT+  ++A LN   TL ++N FL +AFQSSCEGIMVKSLD +AGY P+KRSD+WLKVKRDY++GL D+
Subjt:  ELLFKFPPLSKLYDLKDFFGDGRLGYFEYAKEITIEKDDACLNCESTLIKLNCFLGDAFQSSCEGIMVKSLDADAGYFPSKRSDAWLKVKRDYLEGLNDS

Query:  LDLVPIGAWHGNGRKVGWHILDPILTA
        LDLVPIGAW+GNGRK GW+   P L A
Subjt:  LDLVPIGAWHGNGRKVGWHILDPILTA

P04819 DNA ligase 11.6e-1545.74Show/hide
Query:  GYFEYAKEITIEKDDACLNCESTLIKLNCFLGDAFQSSCEGIMVKSLDA-DAGYFPSKRSDAWLKVKRDYLEGLNDSLDLVPIGAWHGNGRKVG
        G F+YA +IT           + L +L  FL ++   SCEG+MVK L+  ++ Y PSKRS  WLK+K+DYLEG+ DSLDL  +GA++G G++ G
Subjt:  GYFEYAKEITIEKDDACLNCESTLIKLNCFLGDAFQSSCEGIMVKSLDA-DAGYFPSKRSDAWLKVKRDYLEGLNDSLDLVPIGAWHGNGRKVG

Q27474 DNA ligase 18.2e-1548.53Show/hide
Query:  KLNCFLGDAFQSSCEGIMVKSLDADAGYFPSKRSDAWLKVKRDYLEGLNDSLDLVPIGAWHGNGRKVG
        ++N F  +A Q+ CEG+M+K+LD +A Y  S+RS +WLK+K+DY++G+ D+LDLV +GA+ G G++ G
Subjt:  KLNCFLGDAFQSSCEGIMVKSLDADAGYFPSKRSDAWLKVKRDYLEGLNDSLDLVPIGAWHGNGRKVG

Q42572 DNA ligase 15.1e-1741.94Show/hide
Query:  GYFEYAKEITIEKDDACLNCESTLIKLNCFLGDAFQSSCEGIMVKSLDADAGYFPSKRSDAWLKVKRDYLEGLNDSLDLVPIGAWHGNGRKVG
        GYF++A  +T    D          ++  FL  +    CEG+++K+LD+DA Y P+KRS+ WLK+K+DY++ + DS+DLVPI A+HG G++ G
Subjt:  GYFEYAKEITIEKDDACLNCESTLIKLNCFLGDAFQSSCEGIMVKSLDADAGYFPSKRSDAWLKVKRDYLEGLNDSLDLVPIGAWHGNGRKVG

Q869E1 DNA ligase 11.1e-1644.09Show/hide
Query:  GYFEYAKEITIEKDDACLNCESTLIKLNCFLGDAFQSSCEGIMVKSLDADAGYFPSKRSDAWLKVKRDYLEGLNDSLDLVPIGAWHGNGRKVG
        G F +AK   I          S +  +  +L +A + +CEG+MVK+L   + Y PS+RS  WLK+K+DY++G+ DSLDLVPIGAW+G G++ G
Subjt:  GYFEYAKEITIEKDDACLNCESTLIKLNCFLGDAFQSSCEGIMVKSLDADAGYFPSKRSDAWLKVKRDYLEGLNDSLDLVPIGAWHGNGRKVG

Arabidopsis top hitse value%identityAlignment
AT1G08130.1 DNA ligase 13.6e-1841.94Show/hide
Query:  GYFEYAKEITIEKDDACLNCESTLIKLNCFLGDAFQSSCEGIMVKSLDADAGYFPSKRSDAWLKVKRDYLEGLNDSLDLVPIGAWHGNGRKVG
        GYF++A  +T    D          ++  FL  +    CEG+++K+LD+DA Y P+KRS+ WLK+K+DY++ + DS+DLVPI A+HG G++ G
Subjt:  GYFEYAKEITIEKDDACLNCESTLIKLNCFLGDAFQSSCEGIMVKSLDADAGYFPSKRSDAWLKVKRDYLEGLNDSLDLVPIGAWHGNGRKVG

AT1G49250.1 ATP-dependent DNA ligase3.1e-1741.05Show/hide
Query:  LGYFEYAKEITIEKDDACLNCESTLIKLNCFLGDAFQSSCEGIMVKSLDADAGYFPSKRSDAWLKVKRDYLEGLNDSLDLVPIGAWHGNGRKVGW
        LGYF++A  +T           + + +L  FL  +    CEG+M+KSL ++A Y P+KRS+ WLK+K+DY++ + DS+DLVPI  +HG G++ G+
Subjt:  LGYFEYAKEITIEKDDACLNCESTLIKLNCFLGDAFQSSCEGIMVKSLDADAGYFPSKRSDAWLKVKRDYLEGLNDSLDLVPIGAWHGNGRKVGW

AT1G66730.1 DNA LIGASE 67.5e-4060.63Show/hide
Query:  ELLFKFPPLSKLYDLKDFFGDGRLGYFEYAKEITIEKDDACLNCESTLIKLNCFLGDAFQSSCEGIMVKSLDADAGYFPSKRSDAWLKVKRDYLEGLNDS
        E L   P   +   LK+ F + R GY EYAKEIT+  ++A LN   TL ++N FL +AFQSSCEGIMVKSLD +AGY P+KRSD+WLKVKRDY++GL D+
Subjt:  ELLFKFPPLSKLYDLKDFFGDGRLGYFEYAKEITIEKDDACLNCESTLIKLNCFLGDAFQSSCEGIMVKSLDADAGYFPSKRSDAWLKVKRDYLEGLNDS

Query:  LDLVPIGAWHGNGRKVGWHILDPILTA
        LDLVPIGAW+GNGRK GW+   P L A
Subjt:  LDLVPIGAWHGNGRKVGWHILDPILTA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTTCAAATTCTTTGGAGGCGACGAGTTGTATTCGAAACACTTATTTTTGGACTAAGTGTGAGAGGAACATGTTTTCTATTGAGAATTCAAGTAATAATCAGAAGAT
TTTCCTTTCAATCTCTCATTTGCGTTGGCTTGAACTATCGTTGGTAGAGTTATTACAAGATCCGATTCATATGTTCTTTTCCAAAAAGGATCGGGATGACTCTGGATTCA
TTCGTTTGGCTAAATTCAATTCGTTTAATGAAAGATTTTTCAAATGTGCTATTTGGCTGCCTATTGGTGGTAGGAAAAATTTATGTGTTCCGGCTGGCTTCTTAAAGAAA
GGTTGGATGGTTTTCTGGGAAATGATCAGAGATTTTTTGGGCAAAGCAGAGTCTTGTTTGTTGTCTTCTCCTTGGTTTGGTGTTGGTGAACCTGAGTCTGGTAAGCCTTT
AGCTCCAGATATCTCAGATGATTTGAAGCAAGAAAGTCAGTTTGGTTTTGAGCTCCTTTTCAAGTTTCCTCCGCTTTCAAAGCTTTATGACTTGAAGGATTTTTTTGGTG
ATGGGAGGCTAGGATATTTTGAATATGCCAAAGAAATTACAATTGAAAAGGATGATGCCTGCTTAAACTGTGAATCCACTTTGATTAAATTAAATTGTTTCCTTGGAGAT
GCATTCCAATCATCGTGTGAAGGAATTATGGTCAAATCTTTAGACGCAGATGCTGGATATTTTCCCTCAAAGCGTAGTGATGCATGGTTAAAGGTAAAGCGGGATTATCT
TGAAGGATTGAATGACTCTCTTGATTTAGTCCCTATTGGTGCTTGGCATGGAAATGGAAGAAAAGTGGGATGGCATATTCTTGACCCAATTTTGACTGCTATTGAGCTTA
TTGATGACTTTGTTGTTAGCAAGGAGGAAGGGTGGGTGTTCAAGCTTGATTTTAAGAAGACCTATGACATGGTAGATTGGGATTTTCTTCTTGAGGTGCTTCACCGTAAA
GGGTTTGGAGCTCAATGGATTGGTTAA
mRNA sequenceShow/hide mRNA sequence
ATGTCTTCAAATTCTTTGGAGGCGACGAGTTGTATTCGAAACACTTATTTTTGGACTAAGTGTGAGAGGAACATGTTTTCTATTGAGAATTCAAGTAATAATCAGAAGAT
TTTCCTTTCAATCTCTCATTTGCGTTGGCTTGAACTATCGTTGGTAGAGTTATTACAAGATCCGATTCATATGTTCTTTTCCAAAAAGGATCGGGATGACTCTGGATTCA
TTCGTTTGGCTAAATTCAATTCGTTTAATGAAAGATTTTTCAAATGTGCTATTTGGCTGCCTATTGGTGGTAGGAAAAATTTATGTGTTCCGGCTGGCTTCTTAAAGAAA
GGTTGGATGGTTTTCTGGGAAATGATCAGAGATTTTTTGGGCAAAGCAGAGTCTTGTTTGTTGTCTTCTCCTTGGTTTGGTGTTGGTGAACCTGAGTCTGGTAAGCCTTT
AGCTCCAGATATCTCAGATGATTTGAAGCAAGAAAGTCAGTTTGGTTTTGAGCTCCTTTTCAAGTTTCCTCCGCTTTCAAAGCTTTATGACTTGAAGGATTTTTTTGGTG
ATGGGAGGCTAGGATATTTTGAATATGCCAAAGAAATTACAATTGAAAAGGATGATGCCTGCTTAAACTGTGAATCCACTTTGATTAAATTAAATTGTTTCCTTGGAGAT
GCATTCCAATCATCGTGTGAAGGAATTATGGTCAAATCTTTAGACGCAGATGCTGGATATTTTCCCTCAAAGCGTAGTGATGCATGGTTAAAGGTAAAGCGGGATTATCT
TGAAGGATTGAATGACTCTCTTGATTTAGTCCCTATTGGTGCTTGGCATGGAAATGGAAGAAAAGTGGGATGGCATATTCTTGACCCAATTTTGACTGCTATTGAGCTTA
TTGATGACTTTGTTGTTAGCAAGGAGGAAGGGTGGGTGTTCAAGCTTGATTTTAAGAAGACCTATGACATGGTAGATTGGGATTTTCTTCTTGAGGTGCTTCACCGTAAA
GGGTTTGGAGCTCAATGGATTGGTTAA
Protein sequenceShow/hide protein sequence
MSSNSLEATSCIRNTYFWTKCERNMFSIENSSNNQKIFLSISHLRWLELSLVELLQDPIHMFFSKKDRDDSGFIRLAKFNSFNERFFKCAIWLPIGGRKNLCVPAGFLKK
GWMVFWEMIRDFLGKAESCLLSSPWFGVGEPESGKPLAPDISDDLKQESQFGFELLFKFPPLSKLYDLKDFFGDGRLGYFEYAKEITIEKDDACLNCESTLIKLNCFLGD
AFQSSCEGIMVKSLDADAGYFPSKRSDAWLKVKRDYLEGLNDSLDLVPIGAWHGNGRKVGWHILDPILTAIELIDDFVVSKEEGWVFKLDFKKTYDMVDWDFLLEVLHRK
GFGAQWIG