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HG10002747 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10002747
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionCOBRA-like protein
Genome locationChr11:11325085..11325399
RNA-Seq ExpressionHG10002747
SyntenyHG10002747
Gene Ontology termsGO:0010215 - cellulose microfibril organization (biological process)
GO:0052324 - plant-type cell wall cellulose biosynthetic process (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0046658 - anchored component of plasma membrane (cellular component)
InterPro domainsIPR006918 - COBRA, plant


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7018201.1 Protein COBRA [Cucurbita argyrosperma subsp. argyrosperma]5.0e-4591.75Show/hide
Query:  DDTAILWGVKFYNDLLMQAGPLGNVQTELLFQKDPSAFTFDKGWAFPRRIYFNGDNCVMPPPEAYPYLPNTGSKQHVSMFTMLLLISLTLLSFHQSF
        +DTAILWGVKFYNDLLMQAGPLGNVQTELLFQKD S FTFDKGWAFPRRIYFNGDNCVMPPPEAYPYLPNTGSK  VSMFTMLLLISLT+LSFH  F
Subjt:  DDTAILWGVKFYNDLLMQAGPLGNVQTELLFQKDPSAFTFDKGWAFPRRIYFNGDNCVMPPPEAYPYLPNTGSKQHVSMFTMLLLISLTLLSFHQSF

XP_004137135.1 COBRA-like protein 1 [Cucumis sativus]1.1e-4490.82Show/hide
Query:  DDTAILWGVKFYNDLLMQAGPLGNVQTELLFQKDPSAFTFDKGWAFPRRIYFNGDNCVMPPPEAYPYLPNTGSKQHVSMFTMLLLISLTLLSFHQSFA
        +DTAILWGVKFYNDLLMQAGPLGNVQTELLF+KD S FTFDKGWAFPRRIYFNGDNCVMPPPEAYP+LPN GSKQ VS+FTMLLLISLTLLSFH SFA
Subjt:  DDTAILWGVKFYNDLLMQAGPLGNVQTELLFQKDPSAFTFDKGWAFPRRIYFNGDNCVMPPPEAYPYLPNTGSKQHVSMFTMLLLISLTLLSFHQSFA

XP_022955698.1 protein COBRA-like [Cucurbita moschata]1.9e-4490.72Show/hide
Query:  DDTAILWGVKFYNDLLMQAGPLGNVQTELLFQKDPSAFTFDKGWAFPRRIYFNGDNCVMPPPEAYPYLPNTGSKQHVSMFTMLLLISLTLLSFHQSF
        +DTAILWGVKFYNDLLMQAGPLGNVQTELLFQKD S FTFDKGWAFPRRIYFNGDNCVMPPPEAYPYLPNTGSK  VSMF MLLLISLT+LSFH  F
Subjt:  DDTAILWGVKFYNDLLMQAGPLGNVQTELLFQKDPSAFTFDKGWAFPRRIYFNGDNCVMPPPEAYPYLPNTGSKQHVSMFTMLLLISLTLLSFHQSF

XP_023526993.1 protein COBRA-like [Cucurbita pepo subsp. pepo]2.9e-4592.78Show/hide
Query:  DDTAILWGVKFYNDLLMQAGPLGNVQTELLFQKDPSAFTFDKGWAFPRRIYFNGDNCVMPPPEAYPYLPNTGSKQHVSMFTMLLLISLTLLSFHQSF
        +DTAILWGVKFYNDLLMQAGPLGNVQTELLFQKD S FTFDKGWAFPRRIYFNGDNCVMPPPEAYPYLPNTGSK  VSMFTMLLLISLTLLSFH  F
Subjt:  DDTAILWGVKFYNDLLMQAGPLGNVQTELLFQKDPSAFTFDKGWAFPRRIYFNGDNCVMPPPEAYPYLPNTGSKQHVSMFTMLLLISLTLLSFHQSF

XP_038905211.1 protein COBRA-like [Benincasa hispida]1.7e-4591.84Show/hide
Query:  DDTAILWGVKFYNDLLMQAGPLGNVQTELLFQKDPSAFTFDKGWAFPRRIYFNGDNCVMPPPEAYPYLPNTGSKQHVSMFTMLLLISLTLLSFHQSFA
        +DTAILWGVKFYNDLLMQAGPLGNVQTELLF+KD S FTFDKGWAFPRRIYFNGDNCVMPPPEAYPYLPNTGSKQ VS+FTMLLL SLTLLSFH SFA
Subjt:  DDTAILWGVKFYNDLLMQAGPLGNVQTELLFQKDPSAFTFDKGWAFPRRIYFNGDNCVMPPPEAYPYLPNTGSKQHVSMFTMLLLISLTLLSFHQSFA

TrEMBL top hitse value%identityAlignment
A0A0A0KW50 COBRA-like protein5.4e-4590.82Show/hide
Query:  DDTAILWGVKFYNDLLMQAGPLGNVQTELLFQKDPSAFTFDKGWAFPRRIYFNGDNCVMPPPEAYPYLPNTGSKQHVSMFTMLLLISLTLLSFHQSFA
        +DTAILWGVKFYNDLLMQAGPLGNVQTELLF+KD S FTFDKGWAFPRRIYFNGDNCVMPPPEAYP+LPN GSKQ VS+FTMLLLISLTLLSFH SFA
Subjt:  DDTAILWGVKFYNDLLMQAGPLGNVQTELLFQKDPSAFTFDKGWAFPRRIYFNGDNCVMPPPEAYPYLPNTGSKQHVSMFTMLLLISLTLLSFHQSFA

A0A5A7TQP7 COBRA-like protein2.0e-4489.8Show/hide
Query:  DDTAILWGVKFYNDLLMQAGPLGNVQTELLFQKDPSAFTFDKGWAFPRRIYFNGDNCVMPPPEAYPYLPNTGSKQHVSMFTMLLLISLTLLSFHQSFA
        +DTAILWGVKFYNDLLMQAGPLGNVQTELLF+KD S FTFDKGWAFPRRIYFNGDNCVMPPPEAYPYLPN GSK+ VS+FTMLLLISL LLSFH SFA
Subjt:  DDTAILWGVKFYNDLLMQAGPLGNVQTELLFQKDPSAFTFDKGWAFPRRIYFNGDNCVMPPPEAYPYLPNTGSKQHVSMFTMLLLISLTLLSFHQSFA

A0A6J1DLW8 COBRA-like protein7.8e-4484.31Show/hide
Query:  FPKTDDTAILWGVKFYNDLLMQAGPLGNVQTELLFQKDPSAFTFDKGWAFPRRIYFNGDNCVMPPPEAYPYLPNTGSKQHVSMFTMLLLISLTLLSFHQS
        + K +DTAILWGVKFYNDLLMQAGPLGNVQTELLF+KD S FTFDKGWAFPRRIYFNGDNCVMPPP+AYP+LPN GSK+ VS+FT LLL+SLTLLSFH S
Subjt:  FPKTDDTAILWGVKFYNDLLMQAGPLGNVQTELLFQKDPSAFTFDKGWAFPRRIYFNGDNCVMPPPEAYPYLPNTGSKQHVSMFTMLLLISLTLLSFHQS

Query:  FA
        FA
Subjt:  FA

A0A6J1GUP9 protein COBRA-like9.2e-4590.72Show/hide
Query:  DDTAILWGVKFYNDLLMQAGPLGNVQTELLFQKDPSAFTFDKGWAFPRRIYFNGDNCVMPPPEAYPYLPNTGSKQHVSMFTMLLLISLTLLSFHQSF
        +DTAILWGVKFYNDLLMQAGPLGNVQTELLFQKD S FTFDKGWAFPRRIYFNGDNCVMPPPEAYPYLPNTGSK  VSMF MLLLISLT+LSFH  F
Subjt:  DDTAILWGVKFYNDLLMQAGPLGNVQTELLFQKDPSAFTFDKGWAFPRRIYFNGDNCVMPPPEAYPYLPNTGSKQHVSMFTMLLLISLTLLSFHQSF

A0A6J1IWY0 COBRA-like protein9.2e-4593.62Show/hide
Query:  DDTAILWGVKFYNDLLMQAGPLGNVQTELLFQKDPSAFTFDKGWAFPRRIYFNGDNCVMPPPEAYPYLPNTGSKQHVSMFTMLLLISLTLLSFH
        +DTAILWGVKFYNDLLMQAGPLGNVQTELLFQKD S FTFDKGWAFPRRIYFNGDNCVMPPPEAYPYLPNTGSK  V+MFTMLLLISLTLLSFH
Subjt:  DDTAILWGVKFYNDLLMQAGPLGNVQTELLFQKDPSAFTFDKGWAFPRRIYFNGDNCVMPPPEAYPYLPNTGSKQHVSMFTMLLLISLTLLSFH

SwissProt top hitse value%identityAlignment
Q60E70 COBRA-like protein 32.3e-3265.31Show/hide
Query:  KTDDTAILWGVKFYNDLLMQAGPLGNVQTELLFQKDPSAFTFDKGWAFPRRIYFNGDNCVMPPPEAYPYLPNTG--SKQHVSMFTMLLLISL-TLLSF
        K +DTA+ WGVKFYNDLLMQAGPLGN Q+ELL +KD   FTFDKGWAFP R+YFNGDNCVMPPP+AYP+LPN    +KQ +++  ++  I L TLL++
Subjt:  KTDDTAILWGVKFYNDLLMQAGPLGNVQTELLFQKDPSAFTFDKGWAFPRRIYFNGDNCVMPPPEAYPYLPNTG--SKQHVSMFTMLLLISL-TLLSF

Q6Z4G8 COBRA-like protein 12.3e-3263.27Show/hide
Query:  DDTAILWGVKFYNDLLMQAGPLGNVQTELLFQKDPSAFTFDKGWAFPRRIYFNGDNCVMPPPEAYPYLPNTGSKQHVSMFTMLLLISLTLLSFHQSFA
        +DTA+LWG+K+YNDLLM AGP GNVQ+ELLF+KDP +FTF+KGWAFPRR+YFNGDNCVMPPP+AYP+LPN  ++   S+    + I  T L+F   +A
Subjt:  DDTAILWGVKFYNDLLMQAGPLGNVQTELLFQKDPSAFTFDKGWAFPRRIYFNGDNCVMPPPEAYPYLPNTGSKQHVSMFTMLLLISLTLLSFHQSFA

Q8L8Q7 COBRA-like protein 21.2e-3368.13Show/hide
Query:  DDTAILWGVKFYNDLLMQAGPLGNVQTELLFQKDPSAFTFDKGWAFPRRIYFNGDNCVMPPPEAYPYLPNTGSKQHVSMFTMLLLISLTLL
        +DTA+LWG+KFYND L QAGP+GNVQ+ELLFQK+P  FTF+KGWAFPRRIYFNGDNCVMPPP++YP+LPN       S F +LL+  L++L
Subjt:  DDTAILWGVKFYNDLLMQAGPLGNVQTELLFQKDPSAFTFDKGWAFPRRIYFNGDNCVMPPPEAYPYLPNTGSKQHVSMFTMLLLISLTLL

Q94KT8 Protein COBRA7.0e-3467.74Show/hide
Query:  DDTAILWGVKFYNDLLMQAGPLGNVQTELLFQKDPSAFTFDKGWAFPRRIYFNGDNCVMPPPEAYPYLPNTGSKQHVSMFTMLLLISLTLLSF
        +DTA+LWGVKFYND L +AGPLGNVQ+E+LF+KD S FTF+KGWAFPRRIYFNGDNCVMPPP++YP+LPN GS+   S    +LL  L    F
Subjt:  DDTAILWGVKFYNDLLMQAGPLGNVQTELLFQKDPSAFTFDKGWAFPRRIYFNGDNCVMPPPEAYPYLPNTGSKQHVSMFTMLLLISLTLLSF

Q9SRT7 COBRA-like protein 13.4e-3669.79Show/hide
Query:  FPKTDDTAILWGVKFYNDLLMQAGPLGNVQTELLFQKDPSAFTFDKGWAFPRRIYFNGDNCVMPPPEAYPYLPNTGSKQHV-SMFTMLLLISLTLL
        +   +DT ILWG+KFYNDLLMQAGP GNVQ+ELLFQK+ SAFTF+KGWAFPRRIYFNGDNCVMPPP++YP+LPNTGS + V S+F  + L+ +  L
Subjt:  FPKTDDTAILWGVKFYNDLLMQAGPLGNVQTELLFQKDPSAFTFDKGWAFPRRIYFNGDNCVMPPPEAYPYLPNTGSKQHV-SMFTMLLLISLTLL

Arabidopsis top hitse value%identityAlignment
AT1G09790.1 COBRA-like protein 6 precursor6.8e-2452.75Show/hide
Query:  DDTAILWGVKFYNDLLMQAGPLGNVQTELLFQKDPSAFTFDKGWAFPRRIYFNGDNCVMPPPEAYPYLPNTGSKQHVSMFTMLLLISLTLL
        +DT + WGV+FYND+L+Q G +GNVQTELL +KD   FTF +GWAFPRRI FNGD CVMP P+ +P LP +    H S  +  ++ S++++
Subjt:  DDTAILWGVKFYNDLLMQAGPLGNVQTELLFQKDPSAFTFDKGWAFPRRIYFNGDNCVMPPPEAYPYLPNTGSKQHVSMFTMLLLISLTLL

AT3G02210.1 COBRA-like protein 1 precursor2.4e-3769.79Show/hide
Query:  FPKTDDTAILWGVKFYNDLLMQAGPLGNVQTELLFQKDPSAFTFDKGWAFPRRIYFNGDNCVMPPPEAYPYLPNTGSKQHV-SMFTMLLLISLTLL
        +   +DT ILWG+KFYNDLLMQAGP GNVQ+ELLFQK+ SAFTF+KGWAFPRRIYFNGDNCVMPPP++YP+LPNTGS + V S+F  + L+ +  L
Subjt:  FPKTDDTAILWGVKFYNDLLMQAGPLGNVQTELLFQKDPSAFTFDKGWAFPRRIYFNGDNCVMPPPEAYPYLPNTGSKQHV-SMFTMLLLISLTLL

AT3G29810.1 COBRA-like protein 2 precursor8.5e-3568.13Show/hide
Query:  DDTAILWGVKFYNDLLMQAGPLGNVQTELLFQKDPSAFTFDKGWAFPRRIYFNGDNCVMPPPEAYPYLPNTGSKQHVSMFTMLLLISLTLL
        +DTA+LWG+KFYND L QAGP+GNVQ+ELLFQK+P  FTF+KGWAFPRRIYFNGDNCVMPPP++YP+LPN       S F +LL+  L++L
Subjt:  DDTAILWGVKFYNDLLMQAGPLGNVQTELLFQKDPSAFTFDKGWAFPRRIYFNGDNCVMPPPEAYPYLPNTGSKQHVSMFTMLLLISLTLL

AT5G15630.1 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family1.2e-2856.04Show/hide
Query:  DDTAILWGVKFYNDLLMQAGPLGNVQTELLFQKDPSAFTFDKGWAFPRRIYFNGDNCVMPPPEAYPYLPNTGSKQHVSM-FTMLLLISLTL
        +DT + +G KFYNDLLM+AGP GNVQ+E+L QKD   FTF +GWAFPR++YFNGD C++PPP++YP+LPN+      S   T+LLL+ +++
Subjt:  DDTAILWGVKFYNDLLMQAGPLGNVQTELLFQKDPSAFTFDKGWAFPRRIYFNGDNCVMPPPEAYPYLPNTGSKQHVSM-FTMLLLISLTL

AT5G60920.1 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family5.0e-3567.74Show/hide
Query:  DDTAILWGVKFYNDLLMQAGPLGNVQTELLFQKDPSAFTFDKGWAFPRRIYFNGDNCVMPPPEAYPYLPNTGSKQHVSMFTMLLLISLTLLSF
        +DTA+LWGVKFYND L +AGPLGNVQ+E+LF+KD S FTF+KGWAFPRRIYFNGDNCVMPPP++YP+LPN GS+   S    +LL  L    F
Subjt:  DDTAILWGVKFYNDLLMQAGPLGNVQTELLFQKDPSAFTFDKGWAFPRRIYFNGDNCVMPPPEAYPYLPNTGSKQHVSMFTMLLLISLTLLSF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGTTTTCCTAAAACAGATGATACTGCAATCCTGTGGGGAGTTAAGTTCTACAACGATTTGCTCATGCAAGCAGGTCCCCTTGGGAATGTGCAGACAGAGCTACTTTT
CCAGAAGGATCCATCGGCTTTCACATTTGACAAAGGCTGGGCTTTTCCTCGGAGGATCTATTTTAATGGCGACAATTGTGTTATGCCACCTCCAGAAGCCTATCCCTACT
TACCGAACACGGGTTCTAAGCAACATGTCTCAATGTTTACTATGCTATTGCTGATTTCCTTGACTCTCTTGTCCTTTCACCAATCGTTTGCATAA
mRNA sequenceShow/hide mRNA sequence
ATGTGTTTTCCTAAAACAGATGATACTGCAATCCTGTGGGGAGTTAAGTTCTACAACGATTTGCTCATGCAAGCAGGTCCCCTTGGGAATGTGCAGACAGAGCTACTTTT
CCAGAAGGATCCATCGGCTTTCACATTTGACAAAGGCTGGGCTTTTCCTCGGAGGATCTATTTTAATGGCGACAATTGTGTTATGCCACCTCCAGAAGCCTATCCCTACT
TACCGAACACGGGTTCTAAGCAACATGTCTCAATGTTTACTATGCTATTGCTGATTTCCTTGACTCTCTTGTCCTTTCACCAATCGTTTGCATAA
Protein sequenceShow/hide protein sequence
MCFPKTDDTAILWGVKFYNDLLMQAGPLGNVQTELLFQKDPSAFTFDKGWAFPRRIYFNGDNCVMPPPEAYPYLPNTGSKQHVSMFTMLLLISLTLLSFHQSFA