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HG10002779 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10002779
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionTransposon TX1 uncharacterized
Genome locationChr11:12221977..12222420
RNA-Seq ExpressionHG10002779
SyntenyHG10002779
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK02777.1 Transposon TX1 uncharacterized [Cucumis melo var. makuwa]4.6e-0437.84Show/hide
Query:  MSCCIRNTYFWIKCERNMFYIENSSNNQKIFLSITHLRWLELSLVELLQDPVHVFFSKKDRDDSGFIRLAKFKS
        +SC I + ++ I  E+  F+IE+    + I LS T L W   S+  L+++P   FFSK   DD+G  RL+KF++
Subjt:  MSCCIRNTYFWIKCERNMFYIENSSNNQKIFLSITHLRWLELSLVELLQDPVHVFFSKKDRDDSGFIRLAKFKS
XP_038884899.1 uncharacterized protein LOC120075514 [Benincasa hispida]5.1e-1140.38Show/hide
Query:  FWIKCERNMFYIENSSNNQKIFLSITHLRWLELSLVELLQDPVHVFFSKKDRDDSGFIRLAKFKSFNERFFECAIWPPTGRRKNLH-VPAGFLKKGWMVF
        F ++ E + F +++    Q I LS+T   WL  S   LL      FF  K++ D  F+RLAKF++    F E A+WP TG R+N+H +P G  K GW  F
Subjt:  FWIKCERNMFYIENSSNNQKIFLSITHLRWLELSLVELLQDPVHVFFSKKDRDDSGFIRLAKFKSFNERFFECAIWPPTGRRKNLH-VPAGFLKKGWMVF

Query:  WEMI
         EMI
Subjt:  WEMI
TrEMBL top hitse value%identityAlignment
A0A5D3BTI0 Transposon TX1 uncharacterized2.2e-0437.84Show/hide
Query:  MSCCIRNTYFWIKCERNMFYIENSSNNQKIFLSITHLRWLELSLVELLQDPVHVFFSKKDRDDSGFIRLAKFKS
        +SC I + ++ I  E+  F+IE+    + I LS T L W   S+  L+++P   FFSK   DD+G  RL+KF++
Subjt:  MSCCIRNTYFWIKCERNMFYIENSSNNQKIFLSITHLRWLELSLVELLQDPVHVFFSKKDRDDSGFIRLAKFKS
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTTCAAATTCTTTGGAGGCGATGAGTTGTTGTATTCGAAACACTTATTTTTGGATTAAGTGTGAGAGGAACATGTTTTATATTGAGAATTCGAGTAATAATCAGAA
GATTTTCCTTTCAATCACTCATTTGCGTTGGCTTGAACTATCTTTGGTAGAGTTATTACAAGATCCGGTTCATGTGTTCTTTTCCAAAAAAGATCGGGATGACTCTGGAT
TCATTCGTTTGGCTAAATTCAAATCGTTCAATGAAAGATTTTTCGAATGTGCTATTTGGCCGCCTACTGGTCGTAGGAAAAATTTACATGTTCCGGCTGGCTTCTTGAAG
AAAGGTTGGATGGTTTTTTGGGAAATGATTAGAGATTTTTGGACAAAGCAAAGTCTTGCTTGTTGTCTTCCCCTTGGTTTGGTGTTGGTGAGCTTGAATTTGGTGGGCCT
TTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCTTCAAATTCTTTGGAGGCGATGAGTTGTTGTATTCGAAACACTTATTTTTGGATTAAGTGTGAGAGGAACATGTTTTATATTGAGAATTCGAGTAATAATCAGAA
GATTTTCCTTTCAATCACTCATTTGCGTTGGCTTGAACTATCTTTGGTAGAGTTATTACAAGATCCGGTTCATGTGTTCTTTTCCAAAAAAGATCGGGATGACTCTGGAT
TCATTCGTTTGGCTAAATTCAAATCGTTCAATGAAAGATTTTTCGAATGTGCTATTTGGCCGCCTACTGGTCGTAGGAAAAATTTACATGTTCCGGCTGGCTTCTTGAAG
AAAGGTTGGATGGTTTTTTGGGAAATGATTAGAGATTTTTGGACAAAGCAAAGTCTTGCTTGTTGTCTTCCCCTTGGTTTGGTGTTGGTGAGCTTGAATTTGGTGGGCCT
TTAG
Protein sequenceShow/hide protein sequence
MSSNSLEAMSCCIRNTYFWIKCERNMFYIENSSNNQKIFLSITHLRWLELSLVELLQDPVHVFFSKKDRDDSGFIRLAKFKSFNERFFECAIWPPTGRRKNLHVPAGFLK
KGWMVFWEMIRDFWTKQSLACCLPLGLVLVSLNLVGL