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HG10002785 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10002785
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationChr11:12465268..12465651
RNA-Seq ExpressionHG10002785
SyntenyHG10002785
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AAM01179.2 Putative retroelement [Oryza sativa Japonica Group]6.1e-2140Show/hide
Query:  PNSLATSILKIIYFPNSSILDADMGSNRSVPWRSLIWGREVVKLGLRFRVGNRKAIRLFLDPWIPRALTFKPTLINHEFKDALVADFIDSDGQWMLNKLE
        P+SL   ILK IY+PN S++D   G N S  WR++ +G E++K G+ +R+GN K++RL+ DPWIPR+ + +P       +   V+D ID  G W  +K+ 
Subjt:  PNSLATSILKIIYFPNSSILDADMGSNRSVPWRSLIWGREVVKLGLRFRVGNRKAIRLFLDPWIPRALTFKPTLINHEFKDALVADFIDSDGQWMLNKLE

Query:  VVLLKEDVEAICRIPINKRLNDKWV
           L  D EAI  I ++ RL D ++
Subjt:  VVLLKEDVEAICRIPINKRLNDKWV

ABB46931.2 retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group]6.1e-2140Show/hide
Query:  PNSLATSILKIIYFPNSSILDADMGSNRSVPWRSLIWGREVVKLGLRFRVGNRKAIRLFLDPWIPRALTFKPTLINHEFKDALVADFIDSDGQWMLNKLE
        P+SL   ILK IY+PN S++D   G N S  WR++ +G E++K G+ +R+GN K++RL+ DPWIPR+ + +P       +   V+D ID  G W  +K+ 
Subjt:  PNSLATSILKIIYFPNSSILDADMGSNRSVPWRSLIWGREVVKLGLRFRVGNRKAIRLFLDPWIPRALTFKPTLINHEFKDALVADFIDSDGQWMLNKLE

Query:  VVLLKEDVEAICRIPINKRLNDKWV
           L  D EAI  I ++ RL D ++
Subjt:  VVLLKEDVEAICRIPINKRLNDKWV

EEC72938.1 hypothetical protein OsI_06800 [Oryza sativa Indica Group]2.6e-1938.4Show/hide
Query:  PNSLATSILKIIYFPNSSILDADMGSNRSVPWRSLIWGREVVKLGLRFRVGNRKAIRLFLDPWIPRALTFKPTLINHEFKDALVADFIDSDGQWMLNKLE
        P+SL   ILK  Y+PN S++D   G N S  WR++ +G E++K G+ +R+GN K++RL+ DPWIPR+ + +P       +   V+D ID    W  +K+ 
Subjt:  PNSLATSILKIIYFPNSSILDADMGSNRSVPWRSLIWGREVVKLGLRFRVGNRKAIRLFLDPWIPRALTFKPTLINHEFKDALVADFIDSDGQWMLNKLE

Query:  VVLLKEDVEAICRIPINKRLNDKWV
           L  D EAI  I ++ RL D ++
Subjt:  VVLLKEDVEAICRIPINKRLNDKWV

XP_006491472.1 uncharacterized protein LOC102626455 [Citrus sinensis]3.6e-2142.98Show/hide
Query:  PNSLATSILKIIYFPNSSILDADMGSNRSVPWRSLIWGREVVKLGLRFRVGNRKAIRLFLDPWIPRALTFKPTLINHEFKDALVADFIDSDGQWMLNKLE
        PNSL   ++K  Y+ NS+  +A +GSN S  WRS++WG +V+K G+R+R+G+ K + ++ D WIPR  TF+P        + +VAD IDS+ +W +++LE
Subjt:  PNSLATSILKIIYFPNSSILDADMGSNRSVPWRSLIWGREVVKLGLRFRVGNRKAIRLFLDPWIPRALTFKPTLINHEFKDALVADFIDSDGQWMLNKLE

Query:  VVLLKEDVEAICRI
           +KED+EAI +I
Subjt:  VVLLKEDVEAICRI

XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]2.3e-2040.16Show/hide
Query:  NPNSLATSILKIIYFPNSSILDADMGSNRSVPWRSLIWGREVVKLGLRFRVGNRKAIRLFLDPWIPRALTFKPTLINHEFKDALVADFIDSDGQWMLNKL
        +PN L + +LK  YF ++S+L A   S  S  W+  +WGR+++  GLR RVGN   I+ F DPW+PR  TFKP   N+   D  VA FI +DG W +  +
Subjt:  NPNSLATSILKIIYFPNSSILDADMGSNRSVPWRSLIWGREVVKLGLRFRVGNRKAIRLFLDPWIPRALTFKPTLINHEFKDALVADFIDSDGQWMLNKL

Query:  EVVLLKEDVEAICRIPINK-RLNDKWV
              ED + I  +PI+   L D W+
Subjt:  EVVLLKEDVEAICRIPINK-RLNDKWV

TrEMBL top hitse value%identityAlignment
A0A5E4F9F7 PREDICTED: reverse mRNAase6.2e-1945.3Show/hide
Query:  NPNSLATSILKIIYFPNSSILDADMGSNRSVPWRSLIWGREVVKLGLRFRVGNRKAIRLFLDPWIPRALTFKPTLINHEFKDALVADFIDSDGQWMLNKL
        +P+SL T ++K  YF  SS L A +GS+ S+ WR+L+WGR+V+  G   RVGN  +IRLF + WIP+  TFK  + N    DA VAD   S G W L  L
Subjt:  NPNSLATSILKIIYFPNSSILDADMGSNRSVPWRSLIWGREVVKLGLRFRVGNRKAIRLFLDPWIPRALTFKPTLINHEFKDALVADFIDSDGQWMLNKL

Query:  EVVLLKEDVEAICRIPI
        +    KED +AI  I +
Subjt:  EVVLLKEDVEAICRIPI

A0A6J1DX30 uncharacterized protein LOC1110248741.1e-2040.16Show/hide
Query:  NPNSLATSILKIIYFPNSSILDADMGSNRSVPWRSLIWGREVVKLGLRFRVGNRKAIRLFLDPWIPRALTFKPTLINHEFKDALVADFIDSDGQWMLNKL
        +PN L + +LK  YF ++S+L A   S  S  W+  +WGR+++  GLR RVGN   I+ F DPW+PR  TFKP   N+   D  VA FI +DG W +  +
Subjt:  NPNSLATSILKIIYFPNSSILDADMGSNRSVPWRSLIWGREVVKLGLRFRVGNRKAIRLFLDPWIPRALTFKPTLINHEFKDALVADFIDSDGQWMLNKL

Query:  EVVLLKEDVEAICRIPINK-RLNDKWV
              ED + I  +PI+   L D W+
Subjt:  EVVLLKEDVEAICRIPINK-RLNDKWV

B8AFP4 Reverse transcriptase domain-containing protein1.2e-1938.4Show/hide
Query:  PNSLATSILKIIYFPNSSILDADMGSNRSVPWRSLIWGREVVKLGLRFRVGNRKAIRLFLDPWIPRALTFKPTLINHEFKDALVADFIDSDGQWMLNKLE
        P+SL   ILK  Y+PN S++D   G N S  WR++ +G E++K G+ +R+GN K++RL+ DPWIPR+ + +P       +   V+D ID    W  +K+ 
Subjt:  PNSLATSILKIIYFPNSSILDADMGSNRSVPWRSLIWGREVVKLGLRFRVGNRKAIRLFLDPWIPRALTFKPTLINHEFKDALVADFIDSDGQWMLNKLE

Query:  VVLLKEDVEAICRIPINKRLNDKWV
           L  D EAI  I ++ RL D ++
Subjt:  VVLLKEDVEAICRIPINKRLNDKWV

Q33AJ4 Retrotransposon protein, putative, unclassified3.0e-2140Show/hide
Query:  PNSLATSILKIIYFPNSSILDADMGSNRSVPWRSLIWGREVVKLGLRFRVGNRKAIRLFLDPWIPRALTFKPTLINHEFKDALVADFIDSDGQWMLNKLE
        P+SL   ILK IY+PN S++D   G N S  WR++ +G E++K G+ +R+GN K++RL+ DPWIPR+ + +P       +   V+D ID  G W  +K+ 
Subjt:  PNSLATSILKIIYFPNSSILDADMGSNRSVPWRSLIWGREVVKLGLRFRVGNRKAIRLFLDPWIPRALTFKPTLINHEFKDALVADFIDSDGQWMLNKLE

Query:  VVLLKEDVEAICRIPINKRLNDKWV
           L  D EAI  I ++ RL D ++
Subjt:  VVLLKEDVEAICRIPINKRLNDKWV

Q8S5K1 Putative retroelement3.0e-2140Show/hide
Query:  PNSLATSILKIIYFPNSSILDADMGSNRSVPWRSLIWGREVVKLGLRFRVGNRKAIRLFLDPWIPRALTFKPTLINHEFKDALVADFIDSDGQWMLNKLE
        P+SL   ILK IY+PN S++D   G N S  WR++ +G E++K G+ +R+GN K++RL+ DPWIPR+ + +P       +   V+D ID  G W  +K+ 
Subjt:  PNSLATSILKIIYFPNSSILDADMGSNRSVPWRSLIWGREVVKLGLRFRVGNRKAIRLFLDPWIPRALTFKPTLINHEFKDALVADFIDSDGQWMLNKLE

Query:  VVLLKEDVEAICRIPINKRLNDKWV
           L  D EAI  I ++ RL D ++
Subjt:  VVLLKEDVEAICRIPINKRLNDKWV

SwissProt top hitse value%identityAlignment
P93295 Uncharacterized mitochondrial protein AtMg003103.1e-0737.5Show/hide
Query:  PNSLATSILKIIYFPNSSILDADMGSNRSVPWRSLIWGREVVKLGLRFRVGNRKAIRLFLDPWI
        P++L + +L+  YFP+SS+++  +G+  S  WRS+I GRE++  GL   +G+    +++LD WI
Subjt:  PNSLATSILKIIYFPNSSILDADMGSNRSVPWRSLIWGREVVKLGLRFRVGNRKAIRLFLDPWI

Arabidopsis top hitse value%identityAlignment
AT4G29090.1 Ribonuclease H-like superfamily protein2.0e-0625.37Show/hide
Query:  PNSLATSILKIIYFPNSSILDADMGSNRSVPWRSLIWGREVVKLGLRFRVGNRKAIRLFLDPWI---PRALTFKPTLINHEFKDAL-----VADFIDSDG
        P SL   + K  YF  S  L+A +GS  S  W+S+   +E+++ G R  VGN + I ++   W+   P +   +   +  +   ++     V+D ID  G
Subjt:  PNSLATSILKIIYFPNSSILDADMGSNRSVPWRSLIWGREVVKLGLRFRVGNRKAIRLFLDPWI---PRALTFKPTLINHEFKDAL-----VADFIDSDG

Query:  -QWMLNKLEVVLLKEDVEAICRI-PINKRLNDKW
         +W  + +E++  + + + I  + P  +R+ D +
Subjt:  -QWMLNKLEVVLLKEDVEAICRI-PINKRLNDKW

ATMG00310.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein2.2e-0837.5Show/hide
Query:  PNSLATSILKIIYFPNSSILDADMGSNRSVPWRSLIWGREVVKLGLRFRVGNRKAIRLFLDPWI
        P++L + +L+  YFP+SS+++  +G+  S  WRS+I GRE++  GL   +G+    +++LD WI
Subjt:  PNSLATSILKIIYFPNSSILDADMGSNRSVPWRSLIWGREVVKLGLRFRVGNRKAIRLFLDPWI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACCCAAATTCCTTAGCGACTTCTATTCTTAAGATCATTTACTTTCCAAATAGCTCAATTCTTGATGCTGATATGGGATCCAATCGTTCTGTTCCTTGGAGAAGCCT
TATTTGGGGCAGAGAGGTGGTTAAACTGGGGCTAAGGTTTCGGGTGGGTAATAGAAAAGCCATCAGATTATTCTTAGATCCTTGGATCCCAAGAGCACTTACCTTCAAAC
CTACCTTGATTAATCATGAGTTTAAAGATGCTCTTGTGGCAGATTTTATTGATTCTGATGGCCAATGGATGTTGAATAAGCTTGAAGTTGTCCTTCTTAAAGAGGATGTT
GAAGCCATTTGCCGGATTCCCATTAATAAAAGGTTAAATGATAAATGGGTATGA
mRNA sequenceShow/hide mRNA sequence
ATGAACCCAAATTCCTTAGCGACTTCTATTCTTAAGATCATTTACTTTCCAAATAGCTCAATTCTTGATGCTGATATGGGATCCAATCGTTCTGTTCCTTGGAGAAGCCT
TATTTGGGGCAGAGAGGTGGTTAAACTGGGGCTAAGGTTTCGGGTGGGTAATAGAAAAGCCATCAGATTATTCTTAGATCCTTGGATCCCAAGAGCACTTACCTTCAAAC
CTACCTTGATTAATCATGAGTTTAAAGATGCTCTTGTGGCAGATTTTATTGATTCTGATGGCCAATGGATGTTGAATAAGCTTGAAGTTGTCCTTCTTAAAGAGGATGTT
GAAGCCATTTGCCGGATTCCCATTAATAAAAGGTTAAATGATAAATGGGTATGA
Protein sequenceShow/hide protein sequence
MNPNSLATSILKIIYFPNSSILDADMGSNRSVPWRSLIWGREVVKLGLRFRVGNRKAIRLFLDPWIPRALTFKPTLINHEFKDALVADFIDSDGQWMLNKLEVVLLKEDV
EAICRIPINKRLNDKWV