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HG10002799 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10002799
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon RE1
Genome locationChr11:12850931..12862255
RNA-Seq ExpressionHG10002799
SyntenyHG10002799
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF2322319.1 hypothetical protein GH714_011220 [Hevea brasiliensis]6.1e-1243.24Show/hide
Query:  ILDEDQITQ---GLDPAYANFKVAILAKPPFPTFNQFLLALQSHEQIILAQKAENQVTIYHSQVFVANHERGRNQ-------NYRGKG------SNSRRG
        + D+D++ Q   GL P Y NF++A+L KPP+P+F+QFLLALQ HEQ + A+K E +  + H+Q +   H RGRN        N RGKG       NS+ G
Subjt:  ILDEDQITQ---GLDPAYANFKVAILAKPPFPTFNQFLLALQSHEQIILAQKAENQVTIYHSQVFVANHERGRNQ-------NYRGKG------SNSRRG

Query:  TQSPHHFKGYS
         QS  +   YS
Subjt:  TQSPHHFKGYS

RVW19921.1 Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]1.3e-0939.09Show/hide
Query:  QITQGLDPAYANFKVAILAKPPFPTFNQFLLALQSHEQIILAQKAENQVTIYHSQVFVANHERGRNQNYRGKGSNSRRGTQSPHHFKGYSINHQR---HS
        Q+ QGL   Y +F+VA+L+KPP+P++NQF+LALQ HEQ+I+ +  EN+ +I H Q +     RGRNQ   G+  +  RG      F   + + QR   HS
Subjt:  QITQGLDPAYANFKVAILAKPPFPTFNQFLLALQSHEQIILAQKAENQVTIYHSQVFVANHERGRNQNYRGKGSNSRRGTQSPHHFKGYSINHQR---HS

Query:  NGSNDNRTLH
        +  N   + +
Subjt:  NGSNDNRTLH

RVW82530.1 hypothetical protein CK203_046287 [Vitis vinifera]1.1e-1038.66Show/hide
Query:  QITQGLDPAYANFKVAILAKPPFPTFNQFLLALQSHEQIILAQKAENQVTIYHSQVFVANHERGRNQNYRGKGSNSRRGTQSPHHFKGYSINHQRHSNGS
        Q+ QGL   Y +F+VA+L+KPP+P++NQF+LALQ HEQ+I+ +  EN+ +I H Q +     RGRNQ   G+  +  RG      F   + + QRH+  S
Subjt:  QITQGLDPAYANFKVAILAKPPFPTFNQFLLALQSHEQIILAQKAENQVTIYHSQVFVANHERGRNQNYRGKGSNSRRGTQSPHHFKGYSINHQRHSNGS

Query:  NDNRTLHPMPNYTAAAQPQ
        +   T +P  ++     PQ
Subjt:  NDNRTLHPMPNYTAAAQPQ

RVX10186.1 Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]3.3e-1048.57Show/hide
Query:  QITQGLDPAYANFKVAILAKPPFPTFNQFLLALQSHEQIILAQKAENQVTIYHSQVFVANHERGRNQNYR
        Q+ QGL   Y +F+VA+L+KPP+P++NQF+LALQ HEQ+I+ +  EN+ +I H Q +     RGRN+  R
Subjt:  QITQGLDPAYANFKVAILAKPPFPTFNQFLLALQSHEQIILAQKAENQVTIYHSQVFVANHERGRNQNYR

RVX14187.1 Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]1.3e-0945.45Show/hide
Query:  QITQGLDPAYANFKVAILAKPPFPTFNQFLLALQSHEQIILAQKAENQVTIYHSQVFVANHERGRNQN----YRGKG
        Q+ QGL   Y +F+VA+L+KP +P++NQF+LALQ HEQ+I+ +  EN+ +I H Q +     RGRN+     +RG+G
Subjt:  QITQGLDPAYANFKVAILAKPPFPTFNQFLLALQSHEQIILAQKAENQVTIYHSQVFVANHERGRNQN----YRGKG

TrEMBL top hitse value%identityAlignment
A0A438C9J9 Retrovirus-related Pol polyprotein from transposon RE16.1e-1039.09Show/hide
Query:  QITQGLDPAYANFKVAILAKPPFPTFNQFLLALQSHEQIILAQKAENQVTIYHSQVFVANHERGRNQNYRGKGSNSRRGTQSPHHFKGYSINHQR---HS
        Q+ QGL   Y +F+VA+L+KPP+P++NQF+LALQ HEQ+I+ +  EN+ +I H Q +     RGRNQ   G+  +  RG      F   + + QR   HS
Subjt:  QITQGLDPAYANFKVAILAKPPFPTFNQFLLALQSHEQIILAQKAENQVTIYHSQVFVANHERGRNQNYRGKGSNSRRGTQSPHHFKGYSINHQR---HS

Query:  NGSNDNRTLH
        +  N   + +
Subjt:  NGSNDNRTLH

A0A438HDK5 Uncharacterized protein5.6e-1138.66Show/hide
Query:  QITQGLDPAYANFKVAILAKPPFPTFNQFLLALQSHEQIILAQKAENQVTIYHSQVFVANHERGRNQNYRGKGSNSRRGTQSPHHFKGYSINHQRHSNGS
        Q+ QGL   Y +F+VA+L+KPP+P++NQF+LALQ HEQ+I+ +  EN+ +I H Q +     RGRNQ   G+  +  RG      F   + + QRH+  S
Subjt:  QITQGLDPAYANFKVAILAKPPFPTFNQFLLALQSHEQIILAQKAENQVTIYHSQVFVANHERGRNQNYRGKGSNSRRGTQSPHHFKGYSINHQRHSNGS

Query:  NDNRTLHPMPNYTAAAQPQ
        +   T +P  ++     PQ
Subjt:  NDNRTLHPMPNYTAAAQPQ

A0A438JMJ0 Retrovirus-related Pol polyprotein from transposon RE11.6e-1048.57Show/hide
Query:  QITQGLDPAYANFKVAILAKPPFPTFNQFLLALQSHEQIILAQKAENQVTIYHSQVFVANHERGRNQNYR
        Q+ QGL   Y +F+VA+L+KPP+P++NQF+LALQ HEQ+I+ +  EN+ +I H Q +     RGRN+  R
Subjt:  QITQGLDPAYANFKVAILAKPPFPTFNQFLLALQSHEQIILAQKAENQVTIYHSQVFVANHERGRNQNYR

A0A438JZ09 Retrovirus-related Pol polyprotein from transposon RE16.1e-1045.45Show/hide
Query:  QITQGLDPAYANFKVAILAKPPFPTFNQFLLALQSHEQIILAQKAENQVTIYHSQVFVANHERGRNQN----YRGKG
        Q+ QGL   Y +F+VA+L+KP +P++NQF+LALQ HEQ+I+ +  EN+ +I H Q +     RGRN+     +RG+G
Subjt:  QITQGLDPAYANFKVAILAKPPFPTFNQFLLALQSHEQIILAQKAENQVTIYHSQVFVANHERGRNQN----YRGKG

A0A6A6ND15 Uncharacterized protein2.9e-1243.24Show/hide
Query:  ILDEDQITQ---GLDPAYANFKVAILAKPPFPTFNQFLLALQSHEQIILAQKAENQVTIYHSQVFVANHERGRNQ-------NYRGKG------SNSRRG
        + D+D++ Q   GL P Y NF++A+L KPP+P+F+QFLLALQ HEQ + A+K E +  + H+Q +   H RGRN        N RGKG       NS+ G
Subjt:  ILDEDQITQ---GLDPAYANFKVAILAKPPFPTFNQFLLALQSHEQIILAQKAENQVTIYHSQVFVANHERGRNQ-------NYRGKG------SNSRRG

Query:  TQSPHHFKGYS
         QS  +   YS
Subjt:  TQSPHHFKGYS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTGCCGAAGGTAGTCTTCACCAGAGGTGGTTGTTAGAATTTGGTTGTCAGAGGTGGTCAATGGAGCATGTTGTCGGAAAGTGGTCACCAAAGCATGTTGCCGATGA
CGATTGTCGCTCGGAGTTGGCCATTGGTGCTGGGCGGCAGGTGGAGTCATCAGAGAGCAATTGGCAAACCATTTTGGATGAAGACCAAATCACTCAAGGATTAGACCCAG
CCTATGCAAATTTCAAGGTAGCTATACTAGCCAAACCTCCATTTCCCACTTTTAATCAGTTTCTTCTTGCTCTTCAAAGCCATGAACAAATTATCTTAGCACAAAAGGCT
GAAAATCAAGTAACAATTTATCATAGTCAAGTCTTTGTGGCCAATCATGAGAGAGGAAGAAACCAAAATTATAGAGGAAAAGGGTCTAATTCTCGAAGAGGCACTCAATC
CCCACATCACTTTAAAGGCTACTCCATCAATCATCAAAGGCATTCAAATGGGTCAAATGATAATAGAACTCTCCATCCAATGCCTAACTACACTGCCGCCGCTCAGCCGC
AGTTGTCCAACGCCCAGCCATACCGCTGCCTCACGCAGTCGCCGTCTGTCTCGCCTATTCCACCGCTGTCGTTCTCCGACCGCCAGTCGAATGCCGCCGTCCATGTTCCA
CCAGCCTTAAAGGTTATTATTTTGTGGGTTAAGTCTTGCAAGAAAGCCAACAACATTCAACTTCAATTGCTTCGTTGTCTGTCCAACAATTGCAGGATATGA
mRNA sequenceShow/hide mRNA sequence
ATGATTGCCGAAGGTAGTCTTCACCAGAGGTGGTTGTTAGAATTTGGTTGTCAGAGGTGGTCAATGGAGCATGTTGTCGGAAAGTGGTCACCAAAGCATGTTGCCGATGA
CGATTGTCGCTCGGAGTTGGCCATTGGTGCTGGGCGGCAGGTGGAGTCATCAGAGAGCAATTGGCAAACCATTTTGGATGAAGACCAAATCACTCAAGGATTAGACCCAG
CCTATGCAAATTTCAAGGTAGCTATACTAGCCAAACCTCCATTTCCCACTTTTAATCAGTTTCTTCTTGCTCTTCAAAGCCATGAACAAATTATCTTAGCACAAAAGGCT
GAAAATCAAGTAACAATTTATCATAGTCAAGTCTTTGTGGCCAATCATGAGAGAGGAAGAAACCAAAATTATAGAGGAAAAGGGTCTAATTCTCGAAGAGGCACTCAATC
CCCACATCACTTTAAAGGCTACTCCATCAATCATCAAAGGCATTCAAATGGGTCAAATGATAATAGAACTCTCCATCCAATGCCTAACTACACTGCCGCCGCTCAGCCGC
AGTTGTCCAACGCCCAGCCATACCGCTGCCTCACGCAGTCGCCGTCTGTCTCGCCTATTCCACCGCTGTCGTTCTCCGACCGCCAGTCGAATGCCGCCGTCCATGTTCCA
CCAGCCTTAAAGGTTATTATTTTGTGGGTTAAGTCTTGCAAGAAAGCCAACAACATTCAACTTCAATTGCTTCGTTGTCTGTCCAACAATTGCAGGATATGA
Protein sequenceShow/hide protein sequence
MIAEGSLHQRWLLEFGCQRWSMEHVVGKWSPKHVADDDCRSELAIGAGRQVESSESNWQTILDEDQITQGLDPAYANFKVAILAKPPFPTFNQFLLALQSHEQIILAQKA
ENQVTIYHSQVFVANHERGRNQNYRGKGSNSRRGTQSPHHFKGYSINHQRHSNGSNDNRTLHPMPNYTAAAQPQLSNAQPYRCLTQSPSVSPIPPLSFSDRQSNAAVHVP
PALKVIILWVKSCKKANNIQLQLLRCLSNNCRI