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HG10002808 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10002808
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationChr11:13052631..13062812
RNA-Seq ExpressionHG10002808
SyntenyHG10002808
Gene Ontology termsNA
InterPro domainsIPR005162 - Retrotransposon gag domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022147761.1 uncharacterized protein LOC111016619 [Momordica charantia]5.8e-1656.32Show/hide
Query:  WFQKLKRRSISSFKKLARAFVTQFLGRDQRKLKM-HLLIVKQEQDESLREFVARFNSEALQVDGYNDGAALIAIASGLRDERLLQSF
        WFQ+LKR+SISSFK+LARAFVTQF G   R   + +LL +KQ+  ESL+++VARFN E LQV+G  D   L+   SG++DE+L+ SF
Subjt:  WFQKLKRRSISSFKKLARAFVTQFLGRDQRKLKM-HLLIVKQEQDESLREFVARFNSEALQVDGYNDGAALIAIASGLRDERLLQSF

XP_022150035.1 uncharacterized protein LOC111018307 [Momordica charantia]6.5e-1551.61Show/hide
Query:  WFQKLKRRSISSFKKLARAFVTQFL-GRDQRKLKMHLLIVKQEQDESLREFVARFNSEALQVDGYNDGAALIAIASGLRDERLLQSFVRGNPT
        WF++LKR SISSFK LA+AFVTQF+ GR + +   +LL +KQ   ESL ++VARFN E LQV+G  +  +L+A  S +RDE L  SF +  P+
Subjt:  WFQKLKRRSISSFKKLARAFVTQFL-GRDQRKLKMHLLIVKQEQDESLREFVARFNSEALQVDGYNDGAALIAIASGLRDERLLQSFVRGNPT

XP_022158344.1 uncharacterized protein LOC111024851 [Momordica charantia]2.1e-1855.1Show/hide
Query:  WFQKLKRRSISSFKKLARAFVTQFL-GRDQRKLKMHLLIVKQEQDESLREFVARFNSEALQVDGYNDGAALIAIASGLRDERLLQSFVRGNPTLMLDS
        WF++LKR SISSFK+LA AFVTQF+ GR + K   +LL +KQ+  ESL+E+VARFN E LQV+G  D  ALIA  SG++DERL+ SF +  P   +++
Subjt:  WFQKLKRRSISSFKKLARAFVTQFL-GRDQRKLKMHLLIVKQEQDESLREFVARFNSEALQVDGYNDGAALIAIASGLRDERLLQSFVRGNPTLMLDS

XP_022158830.1 uncharacterized protein LOC111025293 [Momordica charantia]1.5e-1656.52Show/hide
Query:  WFQKLKRRSISSFKKLARAFVTQFL-GRDQRKLKMHLLIVKQEQDESLREFVARFNSEALQVDGYNDGAALIAIASGLRDERLLQSFVRGNP
        WF++LKR SISSFK LARAFVTQF+ GR + +   +LL +KQ   ESLR++VARFN E LQV+G  D  +L+A  SG+RDE L  SF +  P
Subjt:  WFQKLKRRSISSFKKLARAFVTQFL-GRDQRKLKMHLLIVKQEQDESLREFVARFNSEALQVDGYNDGAALIAIASGLRDERLLQSFVRGNP

XP_022159109.1 uncharacterized protein LOC111025548 [Momordica charantia]1.7e-1552.69Show/hide
Query:  WFQKLKRRSISSFKKLARAFVTQFL-GRDQRKLKMHLLIVKQEQDESLREFVARFNSEALQVDGYNDGAALIAIASGLRDERLLQSFVRGNPT
        WF++LKR SISSFK LARAF+TQF+ GR + +   +LL +KQ   ESL ++VARFN E LQ++G  D  +L+A  SG+RDE L  SF +  P+
Subjt:  WFQKLKRRSISSFKKLARAFVTQFL-GRDQRKLKMHLLIVKQEQDESLREFVARFNSEALQVDGYNDGAALIAIASGLRDERLLQSFVRGNPT

TrEMBL top hitse value%identityAlignment
A0A6J1D3B7 uncharacterized protein LOC1110166192.8e-1656.32Show/hide
Query:  WFQKLKRRSISSFKKLARAFVTQFLGRDQRKLKM-HLLIVKQEQDESLREFVARFNSEALQVDGYNDGAALIAIASGLRDERLLQSF
        WFQ+LKR+SISSFK+LARAFVTQF G   R   + +LL +KQ+  ESL+++VARFN E LQV+G  D   L+   SG++DE+L+ SF
Subjt:  WFQKLKRRSISSFKKLARAFVTQFLGRDQRKLKM-HLLIVKQEQDESLREFVARFNSEALQVDGYNDGAALIAIASGLRDERLLQSF

A0A6J1D7D2 uncharacterized protein LOC1110183073.1e-1551.61Show/hide
Query:  WFQKLKRRSISSFKKLARAFVTQFL-GRDQRKLKMHLLIVKQEQDESLREFVARFNSEALQVDGYNDGAALIAIASGLRDERLLQSFVRGNPT
        WF++LKR SISSFK LA+AFVTQF+ GR + +   +LL +KQ   ESL ++VARFN E LQV+G  +  +L+A  S +RDE L  SF +  P+
Subjt:  WFQKLKRRSISSFKKLARAFVTQFL-GRDQRKLKMHLLIVKQEQDESLREFVARFNSEALQVDGYNDGAALIAIASGLRDERLLQSFVRGNPT

A0A6J1DWY0 uncharacterized protein LOC1110252937.4e-1756.52Show/hide
Query:  WFQKLKRRSISSFKKLARAFVTQFL-GRDQRKLKMHLLIVKQEQDESLREFVARFNSEALQVDGYNDGAALIAIASGLRDERLLQSFVRGNP
        WF++LKR SISSFK LARAFVTQF+ GR + +   +LL +KQ   ESLR++VARFN E LQV+G  D  +L+A  SG+RDE L  SF +  P
Subjt:  WFQKLKRRSISSFKKLARAFVTQFL-GRDQRKLKMHLLIVKQEQDESLREFVARFNSEALQVDGYNDGAALIAIASGLRDERLLQSFVRGNP

A0A6J1DZ49 uncharacterized protein LOC1110248511.0e-1855.1Show/hide
Query:  WFQKLKRRSISSFKKLARAFVTQFL-GRDQRKLKMHLLIVKQEQDESLREFVARFNSEALQVDGYNDGAALIAIASGLRDERLLQSFVRGNPTLMLDS
        WF++LKR SISSFK+LA AFVTQF+ GR + K   +LL +KQ+  ESL+E+VARFN E LQV+G  D  ALIA  SG++DERL+ SF +  P   +++
Subjt:  WFQKLKRRSISSFKKLARAFVTQFL-GRDQRKLKMHLLIVKQEQDESLREFVARFNSEALQVDGYNDGAALIAIASGLRDERLLQSFVRGNPTLMLDS

A0A6J1E1E7 uncharacterized protein LOC1110255488.2e-1652.69Show/hide
Query:  WFQKLKRRSISSFKKLARAFVTQFL-GRDQRKLKMHLLIVKQEQDESLREFVARFNSEALQVDGYNDGAALIAIASGLRDERLLQSFVRGNPT
        WF++LKR SISSFK LARAF+TQF+ GR + +   +LL +KQ   ESL ++VARFN E LQ++G  D  +L+A  SG+RDE L  SF +  P+
Subjt:  WFQKLKRRSISSFKKLARAFVTQFL-GRDQRKLKMHLLIVKQEQDESLREFVARFNSEALQVDGYNDGAALIAIASGLRDERLLQSFVRGNPT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTGGAGGGAGCATCCCCATTGAGTGATCGGTCTGCTAGTTCACGCAAATTCGAAGAAGTTATCACGGACGAGCCACATGCAGGCAAACTTGCACCTACTCATCGTCG
TATTTGGTTTGCGTCGTTGTCGGCTACCGCCCGTCCCTCTTTTGTCGTCGCTCCTTTGGGTTTTGCCGGAATCTTGGTTTTAGGGGAATGGTTTCAAAAATTGAAGAGAA
GATCAATTAGTTCATTCAAAAAACTCGCTCGGGCCTTTGTCACTCAATTCTTGGGTAGAGACCAACGCAAGCTAAAAATGCATTTGCTGATAGTTAAGCAAGAACAAGAT
GAAAGTTTACGTGAGTTTGTCGCACGTTTCAACAGTGAAGCCCTACAAGTCGACGGATACAATGATGGGGCAGCATTAATTGCCATAGCGTCTGGGTTACGAGATGAAAG
ACTCCTTCAATCATTCGTAAGAGGGAACCCAACACTTATGCTGGATTCATAA
mRNA sequenceShow/hide mRNA sequence
ATGCTGGAGGGAGCATCCCCATTGAGTGATCGGTCTGCTAGTTCACGCAAATTCGAAGAAGTTATCACGGACGAGCCACATGCAGGCAAACTTGCACCTACTCATCGTCG
TATTTGGTTTGCGTCGTTGTCGGCTACCGCCCGTCCCTCTTTTGTCGTCGCTCCTTTGGGTTTTGCCGGAATCTTGGTTTTAGGGGAATGGTTTCAAAAATTGAAGAGAA
GATCAATTAGTTCATTCAAAAAACTCGCTCGGGCCTTTGTCACTCAATTCTTGGGTAGAGACCAACGCAAGCTAAAAATGCATTTGCTGATAGTTAAGCAAGAACAAGAT
GAAAGTTTACGTGAGTTTGTCGCACGTTTCAACAGTGAAGCCCTACAAGTCGACGGATACAATGATGGGGCAGCATTAATTGCCATAGCGTCTGGGTTACGAGATGAAAG
ACTCCTTCAATCATTCGTAAGAGGGAACCCAACACTTATGCTGGATTCATAA
Protein sequenceShow/hide protein sequence
MLEGASPLSDRSASSRKFEEVITDEPHAGKLAPTHRRIWFASLSATARPSFVVAPLGFAGILVLGEWFQKLKRRSISSFKKLARAFVTQFLGRDQRKLKMHLLIVKQEQD
ESLREFVARFNSEALQVDGYNDGAALIAIASGLRDERLLQSFVRGNPTLMLDS