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HG10002906 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10002906
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionRING-type domain-containing protein
Genome locationChr11:15301848..15302276
RNA-Seq ExpressionHG10002906
SyntenyHG10002906
Gene Ontology termsNA
InterPro domainsIPR001841 - Zinc finger, RING-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0052944.1 E3 ubiquitin-protein ligase RNF13 [Cucumis melo var. makuwa]1.4e-5878.15Show/hide
Query:  MVFNKVFFFLIYNNFIGFRSKP-RFKQAAPPLPHSGHSSLRPITPDDCTVVALSNPEKAFEDETCCVCLSSMGNRDN------GVGTNVLPCLHEFHKVC
        MVFNKVFFF  YNNFIGFRS+P RFKQA  PLPH G+SSLRP+  DDCT++ALS+ EKA E ETCCVCLSSMGN D       G GT+VLPCLHEFHKVC
Subjt:  MVFNKVFFFLIYNNFIGFRSKP-RFKQAAPPLPHSGHSSLRPITPDDCTVVALSNPEKAFEDETCCVCLSSMGNRDN------GVGTNVLPCLHEFHKVC

Query:  VDRWFEECRRTCPICRYSME--GGERHEDGTNQILTDEMVIWFSSFHTSGF
        V+RWFEECRRTCPICRYSME  GG  HED TNQILTDEMVIWFSSFHTSGF
Subjt:  VDRWFEECRRTCPICRYSME--GGERHEDGTNQILTDEMVIWFSSFHTSGF

KAE8649999.1 hypothetical protein Csa_010276, partial [Cucumis sativus]1.1e-5879.86Show/hide
Query:  FFLIYNNFIGFRSKPRFKQAAPPLPHSGHSSLRPITPDDCTVVALSNPEKAFEDETCCVCLSSMGNR----DNGVGTNVLPCLHEFHKVCVDRWFEECRR
        FF  YNN IGFRS+PRFKQA  PLP SG+SSLRP+  DDCT++ALS+ EKA E ETCCVCLSSMGN     D GVGT+VLPCLHEFHKVCV+RWFEECRR
Subjt:  FFLIYNNFIGFRSKPRFKQAAPPLPHSGHSSLRPITPDDCTVVALSNPEKAFEDETCCVCLSSMGNR----DNGVGTNVLPCLHEFHKVCVDRWFEECRR

Query:  TCPICRYSMEGGERHEDGTNQILTDEMVIWFSSFHTSGF
        TCPICRYSMEGG  HED TNQILTDEMVIWFSSFHTSGF
Subjt:  TCPICRYSMEGGERHEDGTNQILTDEMVIWFSSFHTSGF

KAG6577791.1 Protein goliath, partial [Cucurbita argyrosperma subsp. sororia]1.3e-5675.86Show/hide
Query:  MVFNKVFFFLIYNNFIGFRSKPRFKQAAPPLPHSGHSSLRPITPDDCTVVALSNPEKAFEDETCCVCLSSMGN--RDNGVGTNVLPCLHEFHKVCVDRWF
        MVFNK+FFF  YNN IGFR+ P  KQA  PLP S  SSLRP+TPDDC V ALS+PEKA E ETCCVCLS MGN  +D G+GT+VLPC HEFHK+C+DRWF
Subjt:  MVFNKVFFFLIYNNFIGFRSKPRFKQAAPPLPHSGHSSLRPITPDDCTVVALSNPEKAFEDETCCVCLSSMGN--RDNGVGTNVLPCLHEFHKVCVDRWF

Query:  EECRRTCPICRYSME-GGERHEDGTNQILTDEMVIWFSSFHTSGF
        EECRRTCPICRYSME GG  HEDG+N++LTDEMVIWFSSFHTSGF
Subjt:  EECRRTCPICRYSME-GGERHEDGTNQILTDEMVIWFSSFHTSGF

KAG7015830.1 Protein goliath, partial [Cucurbita argyrosperma subsp. argyrosperma]2.3e-5675.86Show/hide
Query:  MVFNKVFFFLIYNNFIGFRSKPRFKQAAPPLPHSGHSSLRPITPDDCTVVALSNPEKAFEDETCCVCLSSMGN--RDNGVGTNVLPCLHEFHKVCVDRWF
        MVFNK+FFF  YNN IGFR+ P  KQA  PLP S  SSLRP TPDDC V ALS+PEKA E ETCCVCLS MGN  +D G+GT+VLPC HEFHK+C+DRWF
Subjt:  MVFNKVFFFLIYNNFIGFRSKPRFKQAAPPLPHSGHSSLRPITPDDCTVVALSNPEKAFEDETCCVCLSSMGN--RDNGVGTNVLPCLHEFHKVCVDRWF

Query:  EECRRTCPICRYSME-GGERHEDGTNQILTDEMVIWFSSFHTSGF
        EECRRTCPICRYSME GG  HEDG+N++LTDEMVIWFSSFHTSGF
Subjt:  EECRRTCPICRYSME-GGERHEDGTNQILTDEMVIWFSSFHTSGF

XP_038906276.1 E3 ubiquitin-protein ligase RNF167-like [Benincasa hispida]3.6e-6281.76Show/hide
Query:  MVFNKVFFFLIYNNFIGFRSKPRFKQAAPPLPHSGHSSLRPITPDDCTVVALSNPEKAFEDETCCVCLSSMGN----RDNGVG--TNVLPCLHEFHKVCV
        MVFNKVFFF  YNNF+GFRS+ R KQA  PLPH G+ SLRPITPDDC +V LS+PEKA E ETCCVCLSSMGN    RD GVG  T+VLPCLHEFHKVCV
Subjt:  MVFNKVFFFLIYNNFIGFRSKPRFKQAAPPLPHSGHSSLRPITPDDCTVVALSNPEKAFEDETCCVCLSSMGN----RDNGVG--TNVLPCLHEFHKVCV

Query:  DRWFEECRRTCPICRYSMEGGERHEDGTNQILTDEMVIWFSSFHTSGF
        DRWFEECRRTCPICRYSMEGG  HEDGTNQILTDEMVIWFSSFHTSGF
Subjt:  DRWFEECRRTCPICRYSMEGGERHEDGTNQILTDEMVIWFSSFHTSGF

TrEMBL top hitse value%identityAlignment
A0A0A0L4W7 RING-type domain-containing protein1.9e-6180.14Show/hide
Query:  MVFNKVFFFLIYNNFIGFRSKPRFKQAAPPLPHSGHSSLRPITPDDCTVVALSNPEKAFEDETCCVCLSSMGNR----DNGVGTNVLPCLHEFHKVCVDR
        M+FNKVFFF  YNN IGFRS+PRFKQA  PLP SG+SSLRP+  DDCT++ALS+ EKA E ETCCVCLSSMGN     D GVGT+VLPCLHEFHKVCV+R
Subjt:  MVFNKVFFFLIYNNFIGFRSKPRFKQAAPPLPHSGHSSLRPITPDDCTVVALSNPEKAFEDETCCVCLSSMGNR----DNGVGTNVLPCLHEFHKVCVDR

Query:  WFEECRRTCPICRYSMEGGERHEDGTNQILTDEMVIWFSSFHTSGF
        WFEECRRTCPICRYSMEGG  HED TNQILTDEMVIWFSSFHTSGF
Subjt:  WFEECRRTCPICRYSMEGGERHEDGTNQILTDEMVIWFSSFHTSGF

A0A5D3CJ45 E3 ubiquitin-protein ligase RNF136.9e-5978.15Show/hide
Query:  MVFNKVFFFLIYNNFIGFRSKP-RFKQAAPPLPHSGHSSLRPITPDDCTVVALSNPEKAFEDETCCVCLSSMGNRDN------GVGTNVLPCLHEFHKVC
        MVFNKVFFF  YNNFIGFRS+P RFKQA  PLPH G+SSLRP+  DDCT++ALS+ EKA E ETCCVCLSSMGN D       G GT+VLPCLHEFHKVC
Subjt:  MVFNKVFFFLIYNNFIGFRSKP-RFKQAAPPLPHSGHSSLRPITPDDCTVVALSNPEKAFEDETCCVCLSSMGNRDN------GVGTNVLPCLHEFHKVC

Query:  VDRWFEECRRTCPICRYSME--GGERHEDGTNQILTDEMVIWFSSFHTSGF
        V+RWFEECRRTCPICRYSME  GG  HED TNQILTDEMVIWFSSFHTSGF
Subjt:  VDRWFEECRRTCPICRYSME--GGERHEDGTNQILTDEMVIWFSSFHTSGF

A0A6A1UIA7 Protein preY, mitochondrial7.2e-2445.93Show/hide
Query:  IGFRSKPRFKQAAPPLPHSGHSSLR----PITPDDCTVVALSNPEKAFE----DETCCVCLSSMGNRDNGVGTNVLPCLHEFHKVCVDRWFEECRRTCPI
        IG R++P  K+A    P S +S +         +D T+ A  +   + E    ++ CCVCLS +     G  T +LPCLHEFHKVCVDRWF  CR+TCP+
Subjt:  IGFRSKPRFKQAAPPLPHSGHSSLR----PITPDDCTVVALSNPEKAFE----DETCCVCLSSMGNRDNGVGTNVLPCLHEFHKVCVDRWFEECRRTCPI

Query:  CRYSMEGGERHEDGTNQILTDEMVIWFSSFHTSGF
        CR+SM G +       + LTDEMVIWFSSFH +GF
Subjt:  CRYSMEGGERHEDGTNQILTDEMVIWFSSFHTSGF

A0A6J1CW69 E3 ubiquitin-protein ligase SDIR1-like9.9e-4265.31Show/hide
Query:  MVFNKVFFFLIYNNFIGFRSKPRFKQAAPPLPHSGHSSLRPITPDDCTV---VALSNPEKAFEDE-TCCVCLSSMGNRDNGVGTNVLPCLHEFHKVCVDR
        MVFN+VFFF  + NFIGFR +P+ KQ    LPH G S+LR +  D+  +   V LS+  KA E E  CCVCLSS+   + G+ T+VLPCLHEFHKVCVDR
Subjt:  MVFNKVFFFLIYNNFIGFRSKPRFKQAAPPLPHSGHSSLRPITPDDCTV---VALSNPEKAFEDE-TCCVCLSSMGNRDNGVGTNVLPCLHEFHKVCVDR

Query:  WFEECRRTCPICRYSMEG-GERHEDGTNQILTDEMVIWFSSFHTSGF
        WFEE RRTCPICRYSMEG G+ +E+GT QILTDEMVIWFSSFHTSGF
Subjt:  WFEECRRTCPICRYSMEG-GERHEDGTNQILTDEMVIWFSSFHTSGF

A0A7N2R4T7 RING-type domain-containing protein1.4e-2447.62Show/hide
Query:  MVFNKVFFFLIYNNFIG----FRSKPRFKQAAPPLPHSGHSSLRPITPDDCTVVALSNPEKAFEDETCCVCLSSMGNRDNGVGTNVLPCLHEFHKVCVDR
        MVF K+  F IYN+ IG     R++P F +A         S L  ++ D+  V      E   E E CCVCLS +      + T  LPCLHEFHK+CVDR
Subjt:  MVFNKVFFFLIYNNFIG----FRSKPRFKQAAPPLPHSGHSSLRPITPDDCTVVALSNPEKAFEDETCCVCLSSMGNRDNGVGTNVLPCLHEFHKVCVDR

Query:  WFEE-CRRTCPICRYSMEGGERHEDGTNQILTDEMVIWFSSFHTSGF
        WF   CR+TCP+CR+SM G ++    T Q+LTDEMVIWFSSFH +GF
Subjt:  WFEE-CRRTCPICRYSMEGGERHEDGTNQILTDEMVIWFSSFHTSGF

SwissProt top hitse value%identityAlignment
F4HZZ5 Receptor homology region, transmembrane domain- and RING domain-containing protein 52.0e-0730.61Show/hide
Query:  RFKQAAPPLPHSGHS---SLRPITPDDCTVVALSNPEKAFEDETCCVCLSSMGNRDNGVG--TNVLPCLHEFHKVCVDRWFEECRRTCPICRYSMEGG
        + +Q+   LPH G       R +     T V     E++    TC +C+      D  VG    +LPC H++H VC+D W   CR  CP+C+ +   G
Subjt:  RFKQAAPPLPHSGHS---SLRPITPDDCTVVALSNPEKAFEDETCCVCLSSMGNRDNGVG--TNVLPCLHEFHKVCVDRWFEECRRTCPICRYSMEGG

Q5XIL0 E3 ubiquitin-protein ligase RNF1675.3e-0830.38Show/hide
Query:  ITPDDCTVVALSNPEKAFEDETCCVCLSSMGNRDNGVGTNVLPCLHEFHKVCVDRWFEECRRTCPICRYSMEGGERHED
        +T +    +   + +K  E + C +CL      ++G    +LPC H +H  CVD W  + R+TCPIC+  +  G   E+
Subjt:  ITPDDCTVVALSNPEKAFEDETCCVCLSSMGNRDNGVGTNVLPCLHEFHKVCVDRWFEECRRTCPICRYSMEGGERHED

Q91XF4 E3 ubiquitin-protein ligase RNF1673.1e-0831.4Show/hide
Query:  ITPDDCTVVALSNPEKAFEDETCCVCLSSMGNRDNGVGTNVLPCLHEFHKVCVDRWFEECRRTCPICRYSME---GGERHEDGTNQ
        +T +    +   + +K  E + C +CL      ++G    VLPC H +H  CVD W  + R+TCPIC+  +    G E  E+ T +
Subjt:  ITPDDCTVVALSNPEKAFEDETCCVCLSSMGNRDNGVGTNVLPCLHEFHKVCVDRWFEECRRTCPICRYSME---GGERHEDGTNQ

Q9H6Y7 E3 ubiquitin-protein ligase RNF1673.1e-0831.65Show/hide
Query:  ITPDDCTVVALSNPEKAFEDETCCVCLSSMGNRDNGVGTNVLPCLHEFHKVCVDRWFEECRRTCPICRYSMEGGERHED
        +T +    +   + +K  + + C +CL      ++G    VLPC H +H  CVD W  + R+TCPIC+  +  G   ED
Subjt:  ITPDDCTVVALSNPEKAFEDETCCVCLSSMGNRDNGVGTNVLPCLHEFHKVCVDRWFEECRRTCPICRYSMEGGERHED

Q9M2S6 E3 ubiquitin-protein ligase SDIR11.5e-0736.49Show/hide
Query:  EKAFEDE-TCCVCLSSMGNRDNGVGTNVLPCLHEFHKVCVDRWFEECRRTCPICRYSMEGGERHEDGTNQILTD
        +K  EDE TC VCL  +     G     LPCLH+FH  C+D W  + + TCP+C++    G + +D  +   +D
Subjt:  EKAFEDE-TCCVCLSSMGNRDNGVGTNVLPCLHEFHKVCVDRWFEECRRTCPICRYSMEGGERHEDGTNQILTD

Arabidopsis top hitse value%identityAlignment
AT1G35630.1 Protease-associated (PA) RING/U-box zinc finger family protein1.4e-0830.61Show/hide
Query:  RFKQAAPPLPHSGHS---SLRPITPDDCTVVALSNPEKAFEDETCCVCLSSMGNRDNGVG--TNVLPCLHEFHKVCVDRWFEECRRTCPICRYSMEGG
        + +Q+   LPH G       R +     T V     E++    TC +C+      D  VG    +LPC H++H VC+D W   CR  CP+C+ +   G
Subjt:  RFKQAAPPLPHSGHS---SLRPITPDDCTVVALSNPEKAFEDETCCVCLSSMGNRDNGVG--TNVLPCLHEFHKVCVDRWFEECRRTCPICRYSMEGG

AT3G51325.1 RING/U-box superfamily protein3.0e-1446.25Show/hide
Query:  EDETCCVCLSSMGNRDNGVGTNVLPCLHEFHKVCVDRWFEECRR-TCPICRYSMEGGERHEDGTNQILTDEMVIWFSSFH
        E+E C VCL  M  +D       LPC HEFH +CVD WF   R+  CP+CR+S          T  +LTDE+++WFSSFH
Subjt:  EDETCCVCLSSMGNRDNGVGTNVLPCLHEFHKVCVDRWFEECRR-TCPICRYSMEGGERHEDGTNQILTDEMVIWFSSFH

AT3G55530.1 RING/U-box superfamily protein1.1e-0836.49Show/hide
Query:  EKAFEDE-TCCVCLSSMGNRDNGVGTNVLPCLHEFHKVCVDRWFEECRRTCPICRYSMEGGERHEDGTNQILTD
        +K  EDE TC VCL  +     G     LPCLH+FH  C+D W  + + TCP+C++    G + +D  +   +D
Subjt:  EKAFEDE-TCCVCLSSMGNRDNGVGTNVLPCLHEFHKVCVDRWFEECRRTCPICRYSMEGGERHEDGTNQILTD

AT4G32600.1 RING/U-box superfamily protein5.8e-1039.77Show/hide
Query:  TPDDCTVVALSNPEKAF--EDETCCVCLSSMGNRDNGVGTNVLPCLHEFHKVCVDRWFEECRRTCPICRYSMEGGERHEDGTNQ-ILT
        T +   V A ++ E+A   ED  CC+CL+   N +       LPC H FHK CVD+W  +   +CP+C+   E GE++ D T+Q ILT
Subjt:  TPDDCTVVALSNPEKAF--EDETCCVCLSSMGNRDNGVGTNVLPCLHEFHKVCVDRWFEECRRTCPICRYSMEGGERHEDGTNQ-ILT

AT5G45290.1 RING/U-box superfamily protein6.4e-0937.5Show/hide
Query:  DCTVVALSNPEKAFEDETCCVCLSSMGNRDNGVGTNVLPCLHEFHKVCVDRWFEECRRTCPICR
        D   + L    ++ +   C +CL      D+      LPC HEFHK CVD+W +E  R CP+CR
Subjt:  DCTVVALSNPEKAFEDETCCVCLSSMGNRDNGVGTNVLPCLHEFHKVCVDRWFEECRRTCPICR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTTTCAACAAGGTGTTCTTCTTCTTGATCTACAACAACTTCATCGGCTTCCGAAGCAAGCCGAGATTCAAACAAGCAGCACCCCCGCTTCCTCATAGTGGCCATTC
GAGCCTCCGACCTATTACACCTGATGATTGTACTGTCGTAGCTCTTTCGAATCCCGAGAAGGCGTTTGAGGACGAGACATGTTGTGTGTGCTTGTCGAGTATGGGGAACA
GGGACAATGGGGTTGGCACGAATGTTCTTCCTTGCTTGCACGAGTTTCATAAGGTATGCGTCGATCGTTGGTTCGAAGAGTGTCGGAGAACTTGTCCGATATGTCGATAT
TCGATGGAAGGAGGAGAGCGTCATGAAGATGGGACTAATCAAATACTCACGGATGAGATGGTGATATGGTTTTCTTCTTTCCACACCTCTGGTTTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTTTTCAACAAGGTGTTCTTCTTCTTGATCTACAACAACTTCATCGGCTTCCGAAGCAAGCCGAGATTCAAACAAGCAGCACCCCCGCTTCCTCATAGTGGCCATTC
GAGCCTCCGACCTATTACACCTGATGATTGTACTGTCGTAGCTCTTTCGAATCCCGAGAAGGCGTTTGAGGACGAGACATGTTGTGTGTGCTTGTCGAGTATGGGGAACA
GGGACAATGGGGTTGGCACGAATGTTCTTCCTTGCTTGCACGAGTTTCATAAGGTATGCGTCGATCGTTGGTTCGAAGAGTGTCGGAGAACTTGTCCGATATGTCGATAT
TCGATGGAAGGAGGAGAGCGTCATGAAGATGGGACTAATCAAATACTCACGGATGAGATGGTGATATGGTTTTCTTCTTTCCACACCTCTGGTTTTTGA
Protein sequenceShow/hide protein sequence
MVFNKVFFFLIYNNFIGFRSKPRFKQAAPPLPHSGHSSLRPITPDDCTVVALSNPEKAFEDETCCVCLSSMGNRDNGVGTNVLPCLHEFHKVCVDRWFEECRRTCPICRY
SMEGGERHEDGTNQILTDEMVIWFSSFHTSGF