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HG10002931 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10002931
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Descriptionbeta-carotene isomerase D27, chloroplastic
Genome locationChr11:15506250..15512518
RNA-Seq ExpressionHG10002931
SyntenyHG10002931
Gene Ontology termsNA
InterPro domainsIPR038938 - Beta-carotene isomerase D27-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6596672.1 Beta-carotene isomerase D27, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]1.0e-4646.44Show/hide
Query:  MVGVKLQSIQFFTAPPKEIRSRK-----KQSRFIKCGIAEASGEPAPLGQKTKYDDGPFEKVFMTLFARKMEKFANAKEQRKEKMGLWDFLYDYERFVDV
        MV +KLQS QFFTA P EIRSRK     K SR I+CGIAEASGEPAPLGQKTKY+DGPFEKVFMTLFA+KME++AN+KEQ K K+G WDFLYDYERFVD 
Subjt:  MVGVKLQSIQFFTAPPKEIRSRK-----KQSRFIKCGIAEASGEPAPLGQKTKYDDGPFEKVFMTLFARKMEKFANAKEQRKEKMGLWDFLYDYERFVDV

Query:  SKRVMQ----------------------------------------------------------------------------------------------
        SKRVMQ                                                                                              
Subjt:  SKRVMQ----------------------------------------------------------------------------------------------

Query:  -------------------DFEDMSCEMIYGQVPPPFEEDPVSNQPCYKDICSMANTSTPLCPKLQA
                           +FEDMSCEMIYGQVPPPFEEDPVS QPCYKDICSM+N S+ LCPKL A
Subjt:  -------------------DFEDMSCEMIYGQVPPPFEEDPVSNQPCYKDICSMANTSTPLCPKLQA

XP_008448557.1 PREDICTED: beta-carotene isomerase D27, chloroplastic [Cucumis melo]1.4e-5650.95Show/hide
Query:  MVGVKLQSIQFFTAPPKEIRSRK-KQSRFIKCGIAEASGEPAPLGQKTKYDDGPFEKVFMTLFARKMEKFANAKEQRKEKMGLWDFLYDYERFVDVSKRV
        MV +KLQSIQFFTAPPKEIR+RK  +SRFI+CGIAEASGEPAPLGQKTKY+DGPFEKVFMTLFARKMEKFANAKEQRK+K G WDFLYDYERFVDVSKRV
Subjt:  MVGVKLQSIQFFTAPPKEIRSRK-KQSRFIKCGIAEASGEPAPLGQKTKYDDGPFEKVFMTLFARKMEKFANAKEQRKEKMGLWDFLYDYERFVDVSKRV

Query:  MQ--------------------------------------------------------------------------------------------------
        MQ                                                                                                  
Subjt:  MQ--------------------------------------------------------------------------------------------------

Query:  ---------------DFEDMSCEMIYGQVPPPFEEDPVSNQPCYKDICSMANTSTPLCPKLQA
                       +FEDMSCEMIYGQVPPPFEEDPVS QPCYKDICSM+NTS PLCPKL A
Subjt:  ---------------DFEDMSCEMIYGQVPPPFEEDPVSNQPCYKDICSMANTSTPLCPKLQA

XP_011650294.1 beta-carotene isomerase D27, chloroplastic [Cucumis sativus]5.3e-5651.33Show/hide
Query:  MVGVKLQSIQFFTAPPKEIRSRKKQSRFIKCGIAEASGEPAPLGQKTKYDDGPFEKVFMTLFARKMEKFANAKEQRKEKMGL-WDFLYDYERFVDVSKRV
        MV +KLQSIQFFTAPPKEIR+RK +SRFI+CGIAEASGEPAPLGQKTKY+DGPFEKVFMTLFARKMEKFANAKEQRK+K GL WDFLYDYERFVDVSKRV
Subjt:  MVGVKLQSIQFFTAPPKEIRSRKKQSRFIKCGIAEASGEPAPLGQKTKYDDGPFEKVFMTLFARKMEKFANAKEQRKEKMGL-WDFLYDYERFVDVSKRV

Query:  MQ--------------------------------------------------------------------------------------------------
        MQ                                                                                                  
Subjt:  MQ--------------------------------------------------------------------------------------------------

Query:  ---------------DFEDMSCEMIYGQVPPPFEEDPVSNQPCYKDICSMANTSTPLCPKLQA
                       +FEDMSCEMIYGQVPPPFEEDPVS QPCYKDICSMA TS PLCPKL A
Subjt:  ---------------DFEDMSCEMIYGQVPPPFEEDPVSNQPCYKDICSMANTSTPLCPKLQA

XP_023540699.1 beta-carotene isomerase D27, chloroplastic [Cucurbita pepo subsp. pepo]4.5e-4746.82Show/hide
Query:  MVGVKLQSIQFFTAPPKEIRSRK-----KQSRFIKCGIAEASGEPAPLGQKTKYDDGPFEKVFMTLFARKMEKFANAKEQRKEKMGLWDFLYDYERFVDV
        MV +KLQS QFFTA P EIRSRK     K SR I+CGIAEASGEPAPLGQKTKY+DGPFEKVFMTLFA+KMEK+AN+KEQ K K+G WDFLYDYERFVD 
Subjt:  MVGVKLQSIQFFTAPPKEIRSRK-----KQSRFIKCGIAEASGEPAPLGQKTKYDDGPFEKVFMTLFARKMEKFANAKEQRKEKMGLWDFLYDYERFVDV

Query:  SKRVMQ----------------------------------------------------------------------------------------------
        SKRVMQ                                                                                              
Subjt:  SKRVMQ----------------------------------------------------------------------------------------------

Query:  -------------------DFEDMSCEMIYGQVPPPFEEDPVSNQPCYKDICSMANTSTPLCPKLQA
                           +FEDMSCEMIYGQVPPPFEEDPVS QPCYKDICSM+N S+ LCPKL A
Subjt:  -------------------DFEDMSCEMIYGQVPPPFEEDPVSNQPCYKDICSMANTSTPLCPKLQA

XP_038876564.1 beta-carotene isomerase D27, chloroplastic [Benincasa hispida]1.3e-5952.11Show/hide
Query:  MVGVKLQSIQFFTAPPKEIRSRKKQSRFIKCGIAEASGEPAPLGQKTKYDDGPFEKVFMTLFARKMEKFANAKEQRKEKMGLWDFLYDYERFVDVSKRVM
        MV VKLQSIQFFTAPPKEIR RKKQSRF++CGIAEASGEPAPLGQKTKY+DGPFEKVFMTLFARKMEKFAN KEQ K+K+GLWDFLYDYERFVDVSKRVM
Subjt:  MVGVKLQSIQFFTAPPKEIRSRKKQSRFIKCGIAEASGEPAPLGQKTKYDDGPFEKVFMTLFARKMEKFANAKEQRKEKMGLWDFLYDYERFVDVSKRVM

Query:  Q---------------------------------------------------------------------------------------------------
        Q                                                                                                   
Subjt:  Q---------------------------------------------------------------------------------------------------

Query:  --------------DFEDMSCEMIYGQVPPPFEEDPVSNQPCYKDICSMANTSTPLCPKLQ
                      +FEDMSCEMIYGQVPPPFEEDPVSNQPCYKDICSMAN+STP+CPKLQ
Subjt:  --------------DFEDMSCEMIYGQVPPPFEEDPVSNQPCYKDICSMANTSTPLCPKLQ

TrEMBL top hitse value%identityAlignment
A0A0A0L682 DUF4033 domain-containing protein2.6e-5651.33Show/hide
Query:  MVGVKLQSIQFFTAPPKEIRSRKKQSRFIKCGIAEASGEPAPLGQKTKYDDGPFEKVFMTLFARKMEKFANAKEQRKEKMGL-WDFLYDYERFVDVSKRV
        MV +KLQSIQFFTAPPKEIR+RK +SRFI+CGIAEASGEPAPLGQKTKY+DGPFEKVFMTLFARKMEKFANAKEQRK+K GL WDFLYDYERFVDVSKRV
Subjt:  MVGVKLQSIQFFTAPPKEIRSRKKQSRFIKCGIAEASGEPAPLGQKTKYDDGPFEKVFMTLFARKMEKFANAKEQRKEKMGL-WDFLYDYERFVDVSKRV

Query:  MQ--------------------------------------------------------------------------------------------------
        MQ                                                                                                  
Subjt:  MQ--------------------------------------------------------------------------------------------------

Query:  ---------------DFEDMSCEMIYGQVPPPFEEDPVSNQPCYKDICSMANTSTPLCPKLQA
                       +FEDMSCEMIYGQVPPPFEEDPVS QPCYKDICSMA TS PLCPKL A
Subjt:  ---------------DFEDMSCEMIYGQVPPPFEEDPVSNQPCYKDICSMANTSTPLCPKLQA

A0A1S3BKU4 beta-carotene isomerase D27, chloroplastic6.7e-5750.95Show/hide
Query:  MVGVKLQSIQFFTAPPKEIRSRK-KQSRFIKCGIAEASGEPAPLGQKTKYDDGPFEKVFMTLFARKMEKFANAKEQRKEKMGLWDFLYDYERFVDVSKRV
        MV +KLQSIQFFTAPPKEIR+RK  +SRFI+CGIAEASGEPAPLGQKTKY+DGPFEKVFMTLFARKMEKFANAKEQRK+K G WDFLYDYERFVDVSKRV
Subjt:  MVGVKLQSIQFFTAPPKEIRSRK-KQSRFIKCGIAEASGEPAPLGQKTKYDDGPFEKVFMTLFARKMEKFANAKEQRKEKMGLWDFLYDYERFVDVSKRV

Query:  MQ--------------------------------------------------------------------------------------------------
        MQ                                                                                                  
Subjt:  MQ--------------------------------------------------------------------------------------------------

Query:  ---------------DFEDMSCEMIYGQVPPPFEEDPVSNQPCYKDICSMANTSTPLCPKLQA
                       +FEDMSCEMIYGQVPPPFEEDPVS QPCYKDICSM+NTS PLCPKL A
Subjt:  ---------------DFEDMSCEMIYGQVPPPFEEDPVSNQPCYKDICSMANTSTPLCPKLQA

A0A5A7UFH7 Beta-carotene isomerase D276.7e-5750.95Show/hide
Query:  MVGVKLQSIQFFTAPPKEIRSRK-KQSRFIKCGIAEASGEPAPLGQKTKYDDGPFEKVFMTLFARKMEKFANAKEQRKEKMGLWDFLYDYERFVDVSKRV
        MV +KLQSIQFFTAPPKEIR+RK  +SRFI+CGIAEASGEPAPLGQKTKY+DGPFEKVFMTLFARKMEKFANAKEQRK+K G WDFLYDYERFVDVSKRV
Subjt:  MVGVKLQSIQFFTAPPKEIRSRK-KQSRFIKCGIAEASGEPAPLGQKTKYDDGPFEKVFMTLFARKMEKFANAKEQRKEKMGLWDFLYDYERFVDVSKRV

Query:  MQ--------------------------------------------------------------------------------------------------
        MQ                                                                                                  
Subjt:  MQ--------------------------------------------------------------------------------------------------

Query:  ---------------DFEDMSCEMIYGQVPPPFEEDPVSNQPCYKDICSMANTSTPLCPKLQA
                       +FEDMSCEMIYGQVPPPFEEDPVS QPCYKDICSM+NTS PLCPKL A
Subjt:  ---------------DFEDMSCEMIYGQVPPPFEEDPVSNQPCYKDICSMANTSTPLCPKLQA

A0A6J1FRN3 beta-carotene isomerase D27, chloroplastic4.8e-4746.44Show/hide
Query:  MVGVKLQSIQFFTAPPKEIRSRK-----KQSRFIKCGIAEASGEPAPLGQKTKYDDGPFEKVFMTLFARKMEKFANAKEQRKEKMGLWDFLYDYERFVDV
        MV +KLQS QFFTA P EIRSRK     K SR I+CGIAEASGEPAPLGQKTKY+DGPFEKVFMTLFA+KME++AN+KEQ K K+G WDFLYDYERFVD 
Subjt:  MVGVKLQSIQFFTAPPKEIRSRK-----KQSRFIKCGIAEASGEPAPLGQKTKYDDGPFEKVFMTLFARKMEKFANAKEQRKEKMGLWDFLYDYERFVDV

Query:  SKRVMQ----------------------------------------------------------------------------------------------
        SKRVMQ                                                                                              
Subjt:  SKRVMQ----------------------------------------------------------------------------------------------

Query:  -------------------DFEDMSCEMIYGQVPPPFEEDPVSNQPCYKDICSMANTSTPLCPKLQA
                           +FEDMSCEMIYGQVPPPFEEDPVS QPCYKDICSM+N S+ LCPKL A
Subjt:  -------------------DFEDMSCEMIYGQVPPPFEEDPVSNQPCYKDICSMANTSTPLCPKLQA

A0A6J1L2P3 beta-carotene isomerase D27, chloroplastic7.0e-4646.07Show/hide
Query:  MVGVKLQSIQFFTAPPKEIRSRK-----KQSRFIKCGIAEASGEPAPLGQKTKYDDGPFEKVFMTLFARKMEKFANAKEQRKEKMGLWDFLYDYERFVDV
        MV +KLQS QFFTA P EIRSRK     K SR I+CGIAEASGEPAPLGQKTKY+DGPFEKVFMTLFA+KME++AN+KEQ K K+G WDFLYDYERFVD 
Subjt:  MVGVKLQSIQFFTAPPKEIRSRK-----KQSRFIKCGIAEASGEPAPLGQKTKYDDGPFEKVFMTLFARKMEKFANAKEQRKEKMGLWDFLYDYERFVDV

Query:  SKRVMQ----------------------------------------------------------------------------------------------
        SKRVMQ                                                                                              
Subjt:  SKRVMQ----------------------------------------------------------------------------------------------

Query:  -------------------DFEDMSCEMIYGQVPPPFEEDPVSNQPCYKDICSMANTSTPLCPKLQA
                           +FEDMSCEMIYGQVPP FEEDPVS QPCYKDICSM+N S+ LCPKL A
Subjt:  -------------------DFEDMSCEMIYGQVPPPFEEDPVSNQPCYKDICSMANTSTPLCPKLQA

SwissProt top hitse value%identityAlignment
C7AU21 Beta-carotene isomerase D27, chloroplastic1.7e-0460.61Show/hide
Query:  DFEDMSCEMIYGQVPPPFEEDPVSNQPCYKDIC
        +FEDMSCEMI+GQ PP  E+DP   QPC++  C
Subjt:  DFEDMSCEMIYGQVPPPFEEDPVSNQPCYKDIC

R4HZ96 Beta-carotene isomerase D27, chloroplastic4.4e-0545.65Show/hide
Query:  VMQDFEDMSCEMIYGQVPPPFEEDPVSNQPCYKDICSMANTSTPLC
        ++ +F+DMSCEMI+GQ PP   +DP   QPCYK +C         C
Subjt:  VMQDFEDMSCEMIYGQVPPPFEEDPVSNQPCYKDICSMANTSTPLC

Arabidopsis top hitse value%identityAlignment
AT1G03055.1 unknown protein1.0e-0450Show/hide
Query:  DFEDMSCEMIYGQVPPPFEEDPVSNQPCYK
        DF D+SC+M++G+ PP  E+DP   QPC++
Subjt:  DFEDMSCEMIYGQVPPPFEEDPVSNQPCYK

AT1G64680.1 unknown protein7.7e-2933.47Show/hide
Query:  RFIKCGIAEASGEPAPLGQKTKYDDGPFEKVFMTLFARKMEKFANAKEQRKEKMGLWDFLYDYERFVDVSKRVMQ-------------------------
        R  +CGIAE SGEPAP+G KT+Y+DG  E+VFM LFARKM+KF + K++  ++ G W+  YDYE FV+VSKRVMQ                         
Subjt:  RFIKCGIAEASGEPAPLGQKTKYDDGPFEKVFMTLFARKMEKFANAKEQRKEKMGLWDFLYDYERFVDVSKRVMQ-------------------------

Query:  ----------------------------------------------------------------------------------------DFEDMSCEMIYG
                                                                                                ++EDMSCEMIYG
Subjt:  ----------------------------------------------------------------------------------------DFEDMSCEMIYG

Query:  QVPPPFEEDPVSNQPCYKDICSMANTSTPLCPKLQA
        Q PP FEED  + QPC  DICSM+N S+P+CPKL+A
Subjt:  QVPPPFEEDPVSNQPCYKDICSMANTSTPLCPKLQA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGGGTGTGAAGTTACAGAGCATCCAATTCTTCACAGCTCCTCCAAAGGAGATTAGGAGTAGAAAGAAACAGAGCAGATTTATTAAATGTGGGATAGCGGAGGCATC
TGGTGAGCCAGCTCCATTGGGGCAGAAAACAAAGTACGATGACGGGCCATTTGAGAAGGTTTTTATGACACTTTTTGCAAGGAAAATGGAGAAATTTGCAAATGCTAAGG
AGCAAAGGAAGGAGAAAATGGGATTGTGGGATTTTCTTTATGATTATGAAAGGTTTGTTGATGTTTCAAAACGAGTAATGCAAGATTTTGAAGACATGAGCTGTGAGATG
ATATATGGGCAAGTTCCACCACCATTTGAAGAGGATCCAGTTTCCAACCAACCTTGCTACAAAGATATATGTTCCATGGCAAATACTAGTACCCCTTTATGTCCTAAATT
ACAAGCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGTGGGTGTGAAGTTACAGAGCATCCAATTCTTCACAGCTCCTCCAAAGGAGATTAGGAGTAGAAAGAAACAGAGCAGATTTATTAAATGTGGGATAGCGGAGGCATC
TGGTGAGCCAGCTCCATTGGGGCAGAAAACAAAGTACGATGACGGGCCATTTGAGAAGGTTTTTATGACACTTTTTGCAAGGAAAATGGAGAAATTTGCAAATGCTAAGG
AGCAAAGGAAGGAGAAAATGGGATTGTGGGATTTTCTTTATGATTATGAAAGGTTTGTTGATGTTTCAAAACGAGTAATGCAAGATTTTGAAGACATGAGCTGTGAGATG
ATATATGGGCAAGTTCCACCACCATTTGAAGAGGATCCAGTTTCCAACCAACCTTGCTACAAAGATATATGTTCCATGGCAAATACTAGTACCCCTTTATGTCCTAAATT
ACAAGCTTAA
Protein sequenceShow/hide protein sequence
MVGVKLQSIQFFTAPPKEIRSRKKQSRFIKCGIAEASGEPAPLGQKTKYDDGPFEKVFMTLFARKMEKFANAKEQRKEKMGLWDFLYDYERFVDVSKRVMQDFEDMSCEM
IYGQVPPPFEEDPVSNQPCYKDICSMANTSTPLCPKLQA