; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10003104 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10003104
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionRibosome biogenesis protein WDR12 homolog
Genome locationChr11:17403660..17404349
RNA-Seq ExpressionHG10003104
SyntenyHG10003104
Gene Ontology termsGO:0000463 - maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process)
GO:0000466 - maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process)
GO:0005654 - nucleoplasm (cellular component)
GO:0005730 - nucleolus (cellular component)
GO:0030687 - preribosome, large subunit precursor (cellular component)
GO:0043021 - ribonucleoprotein complex binding (molecular function)
InterPro domainsIPR012972 - NLE


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0041816.1 ribosome biogenesis protein WDR12-like protein [Cucumis melo var. makuwa]9.6e-5796.64Show/hide
Query:  MDIDGDFEDTSRRIQVRFITKLKAPFRVPANAIAIPSNLTRLGLSTVVNNLISAGNPEWVEEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEYLKAV
        MDIDGDFEDTSRRIQVRFITKLKAPF+VPANAIAIPSNLTRLGLSTVVNNL+SAGNPEW EEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEY KAV
Subjt:  MDIDGDFEDTSRRIQVRFITKLKAPFRVPANAIAIPSNLTRLGLSTVVNNLISAGNPEWVEEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEYLKAV

Query:  APRREEEPSVHDDWVSAVD
        APRREEEPSVHDDWVSAVD
Subjt:  APRREEEPSVHDDWVSAVD

TYK05339.1 ribosome biogenesis protein WDR12-like protein [Cucumis melo var. makuwa]9.6e-5796.64Show/hide
Query:  MDIDGDFEDTSRRIQVRFITKLKAPFRVPANAIAIPSNLTRLGLSTVVNNLISAGNPEWVEEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEYLKAV
        MDIDGDFEDTSRRIQVRFITKLKAPF+VPANAIAIPSNLTRLGLSTVVNNL+SAGNPEW EEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEY KAV
Subjt:  MDIDGDFEDTSRRIQVRFITKLKAPFRVPANAIAIPSNLTRLGLSTVVNNLISAGNPEWVEEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEYLKAV

Query:  APRREEEPSVHDDWVSAVD
        APRREEEPSVHDDWVSAVD
Subjt:  APRREEEPSVHDDWVSAVD

XP_004149101.1 ribosome biogenesis protein WDR12 homolog [Cucumis sativus]1.1e-5594.96Show/hide
Query:  MDIDGDFEDTSRRIQVRFITKLKAPFRVPANAIAIPSNLTRLGLSTVVNNLISAGNPEWVEEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEYLKAV
        MDIDGDFEDTSRR+QVRFITKL APF+VPANAIAIPSNLTRLGLSTVVNNL+SAGNPEW EEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEY KAV
Subjt:  MDIDGDFEDTSRRIQVRFITKLKAPFRVPANAIAIPSNLTRLGLSTVVNNLISAGNPEWVEEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEYLKAV

Query:  APRREEEPSVHDDWVSAVD
        APRREEEPSVHDDWVSAVD
Subjt:  APRREEEPSVHDDWVSAVD

XP_008442030.1 PREDICTED: ribosome biogenesis protein WDR12 homolog [Cucumis melo]9.6e-5796.64Show/hide
Query:  MDIDGDFEDTSRRIQVRFITKLKAPFRVPANAIAIPSNLTRLGLSTVVNNLISAGNPEWVEEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEYLKAV
        MDIDGDFEDTSRRIQVRFITKLKAPF+VPANAIAIPSNLTRLGLSTVVNNL+SAGNPEW EEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEY KAV
Subjt:  MDIDGDFEDTSRRIQVRFITKLKAPFRVPANAIAIPSNLTRLGLSTVVNNLISAGNPEWVEEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEYLKAV

Query:  APRREEEPSVHDDWVSAVD
        APRREEEPSVHDDWVSAVD
Subjt:  APRREEEPSVHDDWVSAVD

XP_038875775.1 ribosome biogenesis protein WDR12 homolog [Benincasa hispida]1.5e-5493.28Show/hide
Query:  MDIDGDFEDTSRRIQVRFITKLKAPFRVPANAIAIPSNLTRLGLSTVVNNLISAGNPEWVEEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEYLKAV
        MD DG F+DTSRRIQVRFITKLKAPF+VPANAIAIPS+LTRLGLST+VNNL+SAGNPEW EEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEYLKAV
Subjt:  MDIDGDFEDTSRRIQVRFITKLKAPFRVPANAIAIPSNLTRLGLSTVVNNLISAGNPEWVEEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEYLKAV

Query:  APRREEEPSVHDDWVSAVD
        APRREEEPSVHDDWVSAVD
Subjt:  APRREEEPSVHDDWVSAVD

TrEMBL top hitse value%identityAlignment
A0A0A0KYI3 Ribosome biogenesis protein WDR12 homolog5.1e-5694.96Show/hide
Query:  MDIDGDFEDTSRRIQVRFITKLKAPFRVPANAIAIPSNLTRLGLSTVVNNLISAGNPEWVEEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEYLKAV
        MDIDGDFEDTSRR+QVRFITKL APF+VPANAIAIPSNLTRLGLSTVVNNL+SAGNPEW EEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEY KAV
Subjt:  MDIDGDFEDTSRRIQVRFITKLKAPFRVPANAIAIPSNLTRLGLSTVVNNLISAGNPEWVEEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEYLKAV

Query:  APRREEEPSVHDDWVSAVD
        APRREEEPSVHDDWVSAVD
Subjt:  APRREEEPSVHDDWVSAVD

A0A1S3B4A1 Ribosome biogenesis protein WDR12 homolog4.6e-5796.64Show/hide
Query:  MDIDGDFEDTSRRIQVRFITKLKAPFRVPANAIAIPSNLTRLGLSTVVNNLISAGNPEWVEEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEYLKAV
        MDIDGDFEDTSRRIQVRFITKLKAPF+VPANAIAIPSNLTRLGLSTVVNNL+SAGNPEW EEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEY KAV
Subjt:  MDIDGDFEDTSRRIQVRFITKLKAPFRVPANAIAIPSNLTRLGLSTVVNNLISAGNPEWVEEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEYLKAV

Query:  APRREEEPSVHDDWVSAVD
        APRREEEPSVHDDWVSAVD
Subjt:  APRREEEPSVHDDWVSAVD

A0A5A7TIJ1 Ribosome biogenesis protein WDR12 homolog4.6e-5796.64Show/hide
Query:  MDIDGDFEDTSRRIQVRFITKLKAPFRVPANAIAIPSNLTRLGLSTVVNNLISAGNPEWVEEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEYLKAV
        MDIDGDFEDTSRRIQVRFITKLKAPF+VPANAIAIPSNLTRLGLSTVVNNL+SAGNPEW EEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEY KAV
Subjt:  MDIDGDFEDTSRRIQVRFITKLKAPFRVPANAIAIPSNLTRLGLSTVVNNLISAGNPEWVEEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEYLKAV

Query:  APRREEEPSVHDDWVSAVD
        APRREEEPSVHDDWVSAVD
Subjt:  APRREEEPSVHDDWVSAVD

A0A5D3C4N3 Ribosome biogenesis protein WDR12 homolog4.6e-5796.64Show/hide
Query:  MDIDGDFEDTSRRIQVRFITKLKAPFRVPANAIAIPSNLTRLGLSTVVNNLISAGNPEWVEEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEYLKAV
        MDIDGDFEDTSRRIQVRFITKLKAPF+VPANAIAIPSNLTRLGLSTVVNNL+SAGNPEW EEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEY KAV
Subjt:  MDIDGDFEDTSRRIQVRFITKLKAPFRVPANAIAIPSNLTRLGLSTVVNNLISAGNPEWVEEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEYLKAV

Query:  APRREEEPSVHDDWVSAVD
        APRREEEPSVHDDWVSAVD
Subjt:  APRREEEPSVHDDWVSAVD

A0A6J1DM12 Ribosome biogenesis protein WDR12 homolog9.0e-5390.76Show/hide
Query:  MDIDGDFEDTSRRIQVRFITKLKAPFRVPANAIAIPSNLTRLGLSTVVNNLISAGNPEWVEEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEYLKAV
        MDIDG  EDTSRR+QVRFITKLKAPF+VP NAIAIPSNLTRLGLSTVVNNLI AGNPEW  EPFDFLIDGELVRMSLE+FLLAKGISAEKTLEIEY+KAV
Subjt:  MDIDGDFEDTSRRIQVRFITKLKAPFRVPANAIAIPSNLTRLGLSTVVNNLISAGNPEWVEEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEYLKAV

Query:  APRREEEPSVHDDWVSAVD
        APR+EEEPSVHDDWVSAVD
Subjt:  APRREEEPSVHDDWVSAVD

SwissProt top hitse value%identityAlignment
A1CXL0 Ribosome biogenesis protein ytm14.5e-1742.97Show/hide
Query:  DIDGDFEDTSRRIQVRF-ITKLKAPFRVPANA--IAIPSNLTRLGLSTVVNNLISAGNPEWVEEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEYLK
        D D     ++ + QVR  +T  +    +P NA  I +P++L R  LST+VNNL+    P     PF+FLI+G  +R S++++L A GISAE TLEIEY++
Subjt:  DIDGDFEDTSRRIQVRF-ITKLKAPFRVPANA--IAIPSNLTRLGLSTVVNNLISAGNPEWVEEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEYLK

Query:  AVAPRREEEPSVHDDWVSAVDKYLNATS
        A+ P        HDDWVS+ D  L+ATS
Subjt:  AVAPRREEEPSVHDDWVSAVDKYLNATS

A8IR43 Ribosome biogenesis protein WDR12 homolog3.4e-2553.27Show/hide
Query:  RIQVRFITKLKAPFRVPANAIAIPSNLTRLGLSTVVNNLISAGNPEWVEEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEYLKAVAPRREEEPSVHD
        ++ V+F+TKL A  RVP   +A+PS+L R GLS ++N+L++   P     PFDFLIDGELVR SLE+ LLA  +SAE TLE+EY+ AV P +++  + HD
Subjt:  RIQVRFITKLKAPFRVPANAIAIPSNLTRLGLSTVVNNLISAGNPEWVEEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEYLKAVAPRREEEPSVHD

Query:  DWVSAVD
        DWVS+VD
Subjt:  DWVSAVD

Q2UGK1 Ribosome biogenesis protein ytm17.7e-1743.09Show/hide
Query:  TSRRIQVRFITKLKAPFRVPANA--IAIPSNLTRLGLSTVVNNLISAGNPEWVEEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEYLKAVAPRREEE
        T R+++V+ +T  +    +P N   I +P+ L R  LST+VNNL+    P     PF+FLI+G  +R S++++L A GISAE TLEIEY++A+ P     
Subjt:  TSRRIQVRFITKLKAPFRVPANA--IAIPSNLTRLGLSTVVNNLISAGNPEWVEEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEYLKAVAPRREEE

Query:  PSVHDDWVSAVDKYLNATSTLLS
           HDDWVS+VD  L+ TS   S
Subjt:  PSVHDDWVSAVDKYLNATSTLLS

Q8H594 Ribosome biogenesis protein WDR12 homolog1.1e-3660.87Show/hide
Query:  GDFEDTSRRIQVRFITKLKAPFRVPANAIAIPSNLTRLGLSTVVNNLISAGNPEWVEEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEYLKAVAPRR
        G   D SR+++VRF+TKL AP R P  +IA+P++LTR+GLS +VN+L+ A +P+   +PFDFL+DGELVR+ L++FLLAKGIS E+ LE+EY+KAVAPR+
Subjt:  GDFEDTSRRIQVRFITKLKAPFRVPANAIAIPSNLTRLGLSTVVNNLISAGNPEWVEEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEYLKAVAPRR

Query:  EEEPSVHDDWVSAVD
        +E+P  HDDWVSAVD
Subjt:  EEEPSVHDDWVSAVD

Q9LF27 Ribosome biogenesis protein WDR12 homolog3.5e-4673.11Show/hide
Query:  MDIDGDFEDTSRRIQVRFITKLKAPFRVPANAIAIPSNLTRLGLSTVVNNLISAGNPEWVEEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEYLKAV
        MDIDG  ED SRR+ V+F+TKL +PF+VP N++AIPSN+TRLGLS++VN++I + NPEW  EPFDFLIDGEL+RMSLE+FLLAKGISAE+TLEIEY++AV
Subjt:  MDIDGDFEDTSRRIQVRFITKLKAPFRVPANAIAIPSNLTRLGLSTVVNNLISAGNPEWVEEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEYLKAV

Query:  APRREEEPSVHDDWVSAVD
         PR+EEEPS+HDDWVSAV+
Subjt:  APRREEEPSVHDDWVSAVD

Arabidopsis top hitse value%identityAlignment
AT5G15550.1 Transducin/WD40 repeat-like superfamily protein2.5e-4773.11Show/hide
Query:  MDIDGDFEDTSRRIQVRFITKLKAPFRVPANAIAIPSNLTRLGLSTVVNNLISAGNPEWVEEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEYLKAV
        MDIDG  ED SRR+ V+F+TKL +PF+VP N++AIPSN+TRLGLS++VN++I + NPEW  EPFDFLIDGEL+RMSLE+FLLAKGISAE+TLEIEY++AV
Subjt:  MDIDGDFEDTSRRIQVRFITKLKAPFRVPANAIAIPSNLTRLGLSTVVNNLISAGNPEWVEEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEYLKAV

Query:  APRREEEPSVHDDWVSAVD
         PR+EEEPS+HDDWVSAV+
Subjt:  APRREEEPSVHDDWVSAVD

AT5G15550.2 Transducin/WD40 repeat-like superfamily protein2.5e-4773.11Show/hide
Query:  MDIDGDFEDTSRRIQVRFITKLKAPFRVPANAIAIPSNLTRLGLSTVVNNLISAGNPEWVEEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEYLKAV
        MDIDG  ED SRR+ V+F+TKL +PF+VP N++AIPSN+TRLGLS++VN++I + NPEW  EPFDFLIDGEL+RMSLE+FLLAKGISAE+TLEIEY++AV
Subjt:  MDIDGDFEDTSRRIQVRFITKLKAPFRVPANAIAIPSNLTRLGLSTVVNNLISAGNPEWVEEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEYLKAV

Query:  APRREEEPSVHDDWVSAVD
         PR+EEEPS+HDDWVSAV+
Subjt:  APRREEEPSVHDDWVSAVD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATATTGATGGGGATTTTGAGGACACTTCTCGCCGAATTCAAGTGCGGTTTATCACGAAACTAAAGGCTCCTTTCAGAGTTCCAGCGAATGCCATTGCCATTCCCTC
TAACCTAACCAGACTGGGTCTTTCCACCGTTGTTAACAATCTTATTTCAGCCGGGAATCCCGAGTGGGTAGAAGAACCATTTGATTTTCTAATTGATGGCGAGCTTGTCA
GAATGTCACTGGAGAAATTCCTTCTTGCCAAGGGCATCTCAGCGGAAAAAACATTGGAAATTGAGTACCTTAAGGCGGTTGCCCCACGAAGGGAGGAAGAGCCTTCTGTT
CATGATGATTGGGTCAGTGCAGTTGATAAGTATTTGAATGCAACGTCTACTTTGTTATCTAGTAGTCATCTATAA
mRNA sequenceShow/hide mRNA sequence
ATGGATATTGATGGGGATTTTGAGGACACTTCTCGCCGAATTCAAGTGCGGTTTATCACGAAACTAAAGGCTCCTTTCAGAGTTCCAGCGAATGCCATTGCCATTCCCTC
TAACCTAACCAGACTGGGTCTTTCCACCGTTGTTAACAATCTTATTTCAGCCGGGAATCCCGAGTGGGTAGAAGAACCATTTGATTTTCTAATTGATGGCGAGCTTGTCA
GAATGTCACTGGAGAAATTCCTTCTTGCCAAGGGCATCTCAGCGGAAAAAACATTGGAAATTGAGTACCTTAAGGCGGTTGCCCCACGAAGGGAGGAAGAGCCTTCTGTT
CATGATGATTGGGTCAGTGCAGTTGATAAGTATTTGAATGCAACGTCTACTTTGTTATCTAGTAGTCATCTATAA
Protein sequenceShow/hide protein sequence
MDIDGDFEDTSRRIQVRFITKLKAPFRVPANAIAIPSNLTRLGLSTVVNNLISAGNPEWVEEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEYLKAVAPRREEEPSV
HDDWVSAVDKYLNATSTLLSSSHL