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HG10003115 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10003115
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionCCHC-type domain-containing protein
Genome locationChr11:17548971..17549876
RNA-Seq ExpressionHG10003115
SyntenyHG10003115
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsIPR025558 - Domain of unknown function DUF4283


Homology Show/hide homology
GenBank top hitse value%identityAlignment
OMP03234.1 hypothetical protein COLO4_10561 [Corchorus olitorius]2.3e-1333.83Show/hide
Query:  EDLMEDWKRLRLSEEES-DTRIGFDPHLESLIHGQMEQCLVGKLLSSRTITPGIIRNTFANAWRTKFGFSVVSLGKKMFLFKFDSRRDKEMMIKFGPWLF
        E L   W+   L++EE+ +  +      ESL  G++  CL+GKLLS R +   ++RN     W+   G  V  +G+K+++F+F+S  +KE + + GPW F
Subjt:  EDLMEDWKRLRLSEEES-DTRIGFDPHLESLIHGQMEQCLVGKLLSSRTITPGIIRNTFANAWRTKFGFSVVSLGKKMFLFKFDSRRDKEMMIKFGPWLF

Query:  DSFLLALEDPKTNIKLSKLSFEKVAFWIRLLDL
        +  LL L++    I + ++  E  AFWI++ DL
Subjt:  DSFLLALEDPKTNIKLSKLSFEKVAFWIRLLDL

XP_015381031.1 uncharacterized protein LOC107174550 [Citrus sinensis]4.6e-1437.12Show/hide
Query:  METEDLMEDWKRLRLSEEESDTRIGFDPHLESLIHGQMEQCLVGKLLSSRTITPGIIRNTFANAWRTKFGFSVVSLGKKMFLFKFDSRRDKEMMIKFGPW
        METE+L++    + L EEE D R+ F   ++         CLVGK+L++R ++   IR     AWR      V SL  K+F+FKF S  DK  ++K GPW
Subjt:  METEDLMEDWKRLRLSEEESDTRIGFDPHLESLIHGQMEQCLVGKLLSSRTITPGIIRNTFANAWRTKFGFSVVSLGKKMFLFKFDSRRDKEMMIKFGPW

Query:  LFDSFLLALEDPKTNIKLSKLSFEKVAFWIRL
         FD   + L++P     +++ SF  V+FW++L
Subjt:  LFDSFLLALEDPKTNIKLSKLSFEKVAFWIRL

XP_022156185.1 uncharacterized protein LOC111023135 [Momordica charantia]6.9e-1835.56Show/hide
Query:  METEDLMEDWKRLRLSEEESDTRIGFDPHLESLIHGQMEQCLVGKLLSSRTITPGIIRNTFANAWRTKFGFSVVSLGKKMFLFKFDSRRDKEMMIKFGPW
        M+ E+L+ DW++ +L+ EE +  +  D     +    +   LVGKLL+ R I+  ++      AW+ +   +V S+GK +FLF F    D   ++K GPW
Subjt:  METEDLMEDWKRLRLSEEESDTRIGFDPHLESLIHGQMEQCLVGKLLSSRTITPGIIRNTFANAWRTKFGFSVVSLGKKMFLFKFDSRRDKEMMIKFGPW

Query:  LFDSFLLALEDPKTNIKLSKLSFEKVAFWIRLLDL
         FD  L+ L+ P ++  +S+L F +VAFWI L DL
Subjt:  LFDSFLLALEDPKTNIKLSKLSFEKVAFWIRLLDL

XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]1.4e-1839.71Show/hide
Query:  METEDLMEDWKRLRLSEEESDTRIGFDPHLESLIHGQMEQCLVGKLLSSRTITPGIIRNTFANAWRTK-FGFSVVSLGKKMFLFKFDSRRDKEMMIKFGP
        M T DL+E+WK  +L+ EE +T I  D    +    ++EQ LVGKL   R IT  +++NT   AW+ +   F V SLG  +FLF F    D+  + K GP
Subjt:  METEDLMEDWKRLRLSEEESDTRIGFDPHLESLIHGQMEQCLVGKLLSSRTITPGIIRNTFANAWRTK-FGFSVVSLGKKMFLFKFDSRRDKEMMIKFGP

Query:  WLFDSFLLALEDPKTNIKLSKLSFEKVAFWIRLLDL
        W FD  L+ +  P   I  S+L F K+  W+R  DL
Subjt:  WLFDSFLLALEDPKTNIKLSKLSFEKVAFWIRLLDL

XP_024033132.1 uncharacterized protein LOC112095437 [Citrus clementina]4.2e-1538.64Show/hide
Query:  METEDLMEDWKRLRLSEEESDTRIGFDPHLESLIHGQMEQCLVGKLLSSRTITPGIIRNTFANAWRTKFGFSVVSLGKKMFLFKFDSRRDKEMMIKFGPW
        METE+L+   + + L  EE+D  I F   ++      +  CLVGK+L +R +    ++     AWRT   F V SLG  +F+FKF S  DK+ +   GPW
Subjt:  METEDLMEDWKRLRLSEEESDTRIGFDPHLESLIHGQMEQCLVGKLLSSRTITPGIIRNTFANAWRTKFGFSVVSLGKKMFLFKFDSRRDKEMMIKFGPW

Query:  LFDSFLLALEDPKTNIKLSKLSFEKVAFWIRL
         FD  L+ L++PK    + K SF  V+FWIR+
Subjt:  LFDSFLLALEDPKTNIKLSKLSFEKVAFWIRL

TrEMBL top hitse value%identityAlignment
A0A1R3K847 Uncharacterized protein1.1e-1333.83Show/hide
Query:  EDLMEDWKRLRLSEEES-DTRIGFDPHLESLIHGQMEQCLVGKLLSSRTITPGIIRNTFANAWRTKFGFSVVSLGKKMFLFKFDSRRDKEMMIKFGPWLF
        E L   W+   L++EE+ +  +      ESL  G++  CL+GKLLS R +   ++RN     W+   G  V  +G+K+++F+F+S  +KE + + GPW F
Subjt:  EDLMEDWKRLRLSEEES-DTRIGFDPHLESLIHGQMEQCLVGKLLSSRTITPGIIRNTFANAWRTKFGFSVVSLGKKMFLFKFDSRRDKEMMIKFGPWLF

Query:  DSFLLALEDPKTNIKLSKLSFEKVAFWIRLLDL
        +  LL L++    I + ++  E  AFWI++ DL
Subjt:  DSFLLALEDPKTNIKLSKLSFEKVAFWIRLLDL

A0A6J1BSZ1 uncharacterized protein LOC1110054812.5e-1331.62Show/hide
Query:  METEDLMEDWKRLRLSEEESDTRIGFDPHLESLIHGQMEQCLVGKLLSSRTITPGIIRNTFANAWRTKF-GFSVVSLGKKMFLFKFDSRRDKEMMIKFGP
        M   +L+E+WK  +L+ EE    +  D          +E  L+ KLLS R+I+  +++NT   AW+     FSV  +G  +FLF F+   D+  +++ GP
Subjt:  METEDLMEDWKRLRLSEEESDTRIGFDPHLESLIHGQMEQCLVGKLLSSRTITPGIIRNTFANAWRTKF-GFSVVSLGKKMFLFKFDSRRDKEMMIKFGP

Query:  WLFDSFLLALEDPKTNIKLSKLSFEKVAFWIRLLDL
        W FD  L+ +++P +  K   + F  V+ W+   DL
Subjt:  WLFDSFLLALEDPKTNIKLSKLSFEKVAFWIRLLDL

A0A6J1DU55 uncharacterized protein LOC1110231353.3e-1835.56Show/hide
Query:  METEDLMEDWKRLRLSEEESDTRIGFDPHLESLIHGQMEQCLVGKLLSSRTITPGIIRNTFANAWRTKFGFSVVSLGKKMFLFKFDSRRDKEMMIKFGPW
        M+ E+L+ DW++ +L+ EE +  +  D     +    +   LVGKLL+ R I+  ++      AW+ +   +V S+GK +FLF F    D   ++K GPW
Subjt:  METEDLMEDWKRLRLSEEESDTRIGFDPHLESLIHGQMEQCLVGKLLSSRTITPGIIRNTFANAWRTKFGFSVVSLGKKMFLFKFDSRRDKEMMIKFGPW

Query:  LFDSFLLALEDPKTNIKLSKLSFEKVAFWIRLLDL
         FD  L+ L+ P ++  +S+L F +VAFWI L DL
Subjt:  LFDSFLLALEDPKTNIKLSKLSFEKVAFWIRLLDL

A0A6J1DX30 uncharacterized protein LOC1110248746.7e-1939.71Show/hide
Query:  METEDLMEDWKRLRLSEEESDTRIGFDPHLESLIHGQMEQCLVGKLLSSRTITPGIIRNTFANAWRTK-FGFSVVSLGKKMFLFKFDSRRDKEMMIKFGP
        M T DL+E+WK  +L+ EE +T I  D    +    ++EQ LVGKL   R IT  +++NT   AW+ +   F V SLG  +FLF F    D+  + K GP
Subjt:  METEDLMEDWKRLRLSEEESDTRIGFDPHLESLIHGQMEQCLVGKLLSSRTITPGIIRNTFANAWRTK-FGFSVVSLGKKMFLFKFDSRRDKEMMIKFGP

Query:  WLFDSFLLALEDPKTNIKLSKLSFEKVAFWIRLLDL
        W FD  L+ +  P   I  S+L F K+  W+R  DL
Subjt:  WLFDSFLLALEDPKTNIKLSKLSFEKVAFWIRLLDL

A0A803L1E7 Uncharacterized protein1.6e-1233.33Show/hide
Query:  EDLMEDWKRLRLSEEESDTRIGFDPHLESLIHG---QMEQCLVGKLLSSRTITPGIIRNTFANAWRTKFGFSVVSLGKKMFLFKFDSRRDKEMMIKFGPW
        E+L+ DWK+LRL++EE +  +G D ++E++      Q++  LVGKL + +      ++ T  N WR K  F+V  +   +F+F+F    DKE +++  PW
Subjt:  EDLMEDWKRLRLSEEESDTRIGFDPHLESLIHG---QMEQCLVGKLLSSRTITPGIIRNTFANAWRTKFGFSVVSLGKKMFLFKFDSRRDKEMMIKFGPW

Query:  LFDSFLLALEDPKTNIKLSKLSFEKVAFWIRLLDL
         FD  LL L++ + + + S+++F+    W+RL+D+
Subjt:  LFDSFLLALEDPKTNIKLSKLSFEKVAFWIRLLDL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCTGTGATCAATTTTCAATCGGAGAAAACGGATTTTGGTCAGAATTTCAAGGGGAGAACGATGGAGGAAGTTGATTTGGAAATCATACGACGAACCTGGCGGATTGA
GAGAGCCGTGGAGTGGAAGATGGAAACTGAAGATTTAATGGAAGATTGGAAAAGGCTTCGTCTATCTGAAGAGGAGAGTGATACCAGAATTGGATTTGACCCACATCTTG
AATCTCTTATCCATGGCCAGATGGAACAATGCCTTGTTGGGAAACTGCTTTCTTCTCGAACGATTACGCCAGGAATAATTAGAAATACTTTTGCAAACGCTTGGAGAACA
AAGTTTGGGTTTAGTGTTGTTAGTTTGGGAAAAAAAATGTTTCTTTTTAAATTCGACTCGCGCAGAGATAAGGAAATGATGATCAAATTTGGTCCTTGGTTATTTGATAG
TTTTTTACTGGCACTGGAAGATCCAAAAACAAATATTAAGTTGTCCAAGCTCTCGTTCGAAAAAGTAGCTTTTTGGATTAGATTGTTGGATCTACTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGCCTGTGATCAATTTTCAATCGGAGAAAACGGATTTTGGTCAGAATTTCAAGGGGAGAACGATGGAGGAAGTTGATTTGGAAATCATACGACGAACCTGGCGGATTGA
GAGAGCCGTGGAGTGGAAGATGGAAACTGAAGATTTAATGGAAGATTGGAAAAGGCTTCGTCTATCTGAAGAGGAGAGTGATACCAGAATTGGATTTGACCCACATCTTG
AATCTCTTATCCATGGCCAGATGGAACAATGCCTTGTTGGGAAACTGCTTTCTTCTCGAACGATTACGCCAGGAATAATTAGAAATACTTTTGCAAACGCTTGGAGAACA
AAGTTTGGGTTTAGTGTTGTTAGTTTGGGAAAAAAAATGTTTCTTTTTAAATTCGACTCGCGCAGAGATAAGGAAATGATGATCAAATTTGGTCCTTGGTTATTTGATAG
TTTTTTACTGGCACTGGAAGATCCAAAAACAAATATTAAGTTGTCCAAGCTCTCGTTCGAAAAAGTAGCTTTTTGGATTAGATTGTTGGATCTACTTTAG
Protein sequenceShow/hide protein sequence
MPVINFQSEKTDFGQNFKGRTMEEVDLEIIRRTWRIERAVEWKMETEDLMEDWKRLRLSEEESDTRIGFDPHLESLIHGQMEQCLVGKLLSSRTITPGIIRNTFANAWRT
KFGFSVVSLGKKMFLFKFDSRRDKEMMIKFGPWLFDSFLLALEDPKTNIKLSKLSFEKVAFWIRLLDLL