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HG10003143 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10003143
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionEncodes a root meristem growth factor (RGF). Belongs to a family of functionally redundant homologous peptides that are secreted, tyrosine-sulfated, and expressed mainly in the stem cell area and the innermost layer of central columella cells. RGFs are required for maintenance of the root stem cell niche and transit amplifying cell proliferation. Members of this family include: (RGF1), (RGF2), (RGF3), (RGF4), (RGF5), (RGF6), (RGF7), (RGF8) and (RGF9).
Genome locationChr11:17945388..17946491
RNA-Seq ExpressionHG10003143
SyntenyHG10003143
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7028383.1 Root meristem growth factor 6 [Cucurbita argyrosperma subsp. argyrosperma]1.3e-2357.04Show/hide
Query:  MAMPYLFLILLIFLST-LHVCDARRFRFFESSSSVSRIEPHLISQGIWTDQTERSFDESNSDKASYKEIIVGNEMLKGMKKHGKRLVMEFPKK-------
        M MP    + L+FLST LH CDAR  +   S    SR+EP +IS G  T+Q E+S DES S+  S  E  VG E+LKGMKK  +RL ME P +       
Subjt:  MAMPYLFLILLIFLST-LHVCDARRFRFFESSSSVSRIEPHLISQGIWTDQTERSFDESNSDKASYKEIIVGNEMLKGMKKHGKRLVMEFPKK-------

Query:  -EKVLNSEENEVGEDMVVMDYAQPHRKPPIHNAKP
         +KV+NSEENEVGEDMVVMDYAQPHRKPPIHN KP
Subjt:  -EKVLNSEENEVGEDMVVMDYAQPHRKPPIHNAKP

XP_011650407.1 uncharacterized protein LOC105434783 [Cucumis sativus]2.5e-3870.77Show/hide
Query:  MAMPYLFLILLIFLSTLHVCDARRFRFFESSSSVSRI-EPHLISQGIWT--DQTERSFDESNSDKASY-KEIIVGNEMLKGMKKHGKRLVMEFPKKEKVL
        MAMPY FLILL F STLH CDA R RFF+SS+ VSRI E H +SQGIW+     E SFD++N+D   + KE I+G EMLKGMK+ G RLVMEFP KEKV+
Subjt:  MAMPYLFLILLIFLSTLHVCDARRFRFFESSSSVSRI-EPHLISQGIWT--DQTERSFDESNSDKASY-KEIIVGNEMLKGMKKHGKRLVMEFPKKEKVL

Query:  NSEENEVGEDMVVMDYAQPHRKPPIHNAKP
        NS+ENEVGEDMVVMDYAQPHRKPPIHN KP
Subjt:  NSEENEVGEDMVVMDYAQPHRKPPIHNAKP

XP_023540680.1 uncharacterized protein LOC111800973 [Cucurbita pepo subsp. pepo]4.5e-2458.52Show/hide
Query:  MAMPYLFLILLIFLST-LHVCDARRFRFFESSSSVSRIEPHLISQGIWTDQTERSFDESNSDKASYKEIIVGNEMLKGMKKHGKRLVMEFPKK-------
        M MP  F + L+FLST LH CDAR  +   S    SR+E  LIS G  T+Q ERS DES S+  S  E  VG E+LKGMKK  +RL ME P +       
Subjt:  MAMPYLFLILLIFLST-LHVCDARRFRFFESSSSVSRIEPHLISQGIWTDQTERSFDESNSDKASYKEIIVGNEMLKGMKKHGKRLVMEFPKK-------

Query:  -EKVLNSEENEVGEDMVVMDYAQPHRKPPIHNAKP
         +KV+NSEENEVGEDMVVMDYAQPHRKPPIHN KP
Subjt:  -EKVLNSEENEVGEDMVVMDYAQPHRKPPIHNAKP

XP_038905996.1 uncharacterized protein LOC120091906 isoform X1 [Benincasa hispida]8.2e-5086.4Show/hide
Query:  MPYLFLILLIFLSTLHVCDARRFRFFESSSSVSRIEPHLISQGIWTDQTERSFDESNSDKASYKEIIVGNEMLK-GMKKHGKRLVMEFPKKEKVLNSEEN
        MPYLFLILLIF STLH C+AR  RFFESSS VSRIEPH ISQGIW DQ ERSF+ESNSDK SYKEIIVG EMLK GMKKHG RLVMEFP KEKVLNS+EN
Subjt:  MPYLFLILLIFLSTLHVCDARRFRFFESSSSVSRIEPHLISQGIWTDQTERSFDESNSDKASYKEIIVGNEMLK-GMKKHGKRLVMEFPKKEKVLNSEEN

Query:  EVGEDMVVMDYAQPHRKPPIHNAKP
        EVGEDMVVMDYAQPHRKPPIHN KP
Subjt:  EVGEDMVVMDYAQPHRKPPIHNAKP

XP_038905997.1 uncharacterized protein LOC120091906 isoform X2 [Benincasa hispida]3.3e-5187.1Show/hide
Query:  MPYLFLILLIFLSTLHVCDARRFRFFESSSSVSRIEPHLISQGIWTDQTERSFDESNSDKASYKEIIVGNEMLKGMKKHGKRLVMEFPKKEKVLNSEENE
        MPYLFLILLIF STLH C+AR  RFFESSS VSRIEPH ISQGIW DQ ERSF+ESNSDK SYKEIIVG EMLKGMKKHG RLVMEFP KEKVLNS+ENE
Subjt:  MPYLFLILLIFLSTLHVCDARRFRFFESSSSVSRIEPHLISQGIWTDQTERSFDESNSDKASYKEIIVGNEMLKGMKKHGKRLVMEFPKKEKVLNSEENE

Query:  VGEDMVVMDYAQPHRKPPIHNAKP
        VGEDMVVMDYAQPHRKPPIHN KP
Subjt:  VGEDMVVMDYAQPHRKPPIHNAKP

TrEMBL top hitse value%identityAlignment
A0A0A0L298 Uncharacterized protein1.2e-3870.77Show/hide
Query:  MAMPYLFLILLIFLSTLHVCDARRFRFFESSSSVSRI-EPHLISQGIWT--DQTERSFDESNSDKASY-KEIIVGNEMLKGMKKHGKRLVMEFPKKEKVL
        MAMPY FLILL F STLH CDA R RFF+SS+ VSRI E H +SQGIW+     E SFD++N+D   + KE I+G EMLKGMK+ G RLVMEFP KEKV+
Subjt:  MAMPYLFLILLIFLSTLHVCDARRFRFFESSSSVSRI-EPHLISQGIWT--DQTERSFDESNSDKASY-KEIIVGNEMLKGMKKHGKRLVMEFPKKEKVL

Query:  NSEENEVGEDMVVMDYAQPHRKPPIHNAKP
        NS+ENEVGEDMVVMDYAQPHRKPPIHN KP
Subjt:  NSEENEVGEDMVVMDYAQPHRKPPIHNAKP

A0A2G9HFQ2 Uncharacterized protein2.7e-0633.82Show/hide
Query:  LILLIFLSTLHVCDARRFRFFESSSSVSRIEPHLISQGIWTDQTER------SFDESNSDKAS-------------YKEIIVGNEMLKG-MKKHGKRLVM
        L  L+    LH C AR    ++  S+V+++E  L S+ + T   ER       F    S+K++                    +E +KG  KK   RL +
Subjt:  LILLIFLSTLHVCDARRFRFFESSSSVSRIEPHLISQGIWTDQTER------SFDESNSDKAS-------------YKEIIVGNEMLKG-MKKHGKRLVM

Query:  EFPKKEKVLNSEENEVGEDMVVMDYAQPHRKPPIHN
        E P  E+ +NS++N   +D+  MDYAQPHRKPPIHN
Subjt:  EFPKKEKVLNSEENEVGEDMVVMDYAQPHRKPPIHN

A0A438K320 Uncharacterized protein1.2e-0636.22Show/hide
Query:  MPYLFLILLIFLSTLHVCDARRFRFFESSSSVSRIEPHLISQGI-WTDQTER-SFDESNSDKASYKEIIVGNEMLKGMKKHGKRLVMEFPKK-EKVLNSE
        M  L L+LL+ LS +H C+AR        +     E HL+S+ +   DQ  + S            E +   ++L G K+H + ++   P   E+ ++S+
Subjt:  MPYLFLILLIFLSTLHVCDARRFRFFESSSSVSRIEPHLISQGI-WTDQTER-SFDESNSDKASYKEIIVGNEMLKGMKKHGKRLVMEFPKK-EKVLNSE

Query:  ENEVGEDMVVMDYAQPHRKPPIHNAKP
        E ++ ED+VVMDYAQPHRKPPIHN  P
Subjt:  ENEVGEDMVVMDYAQPHRKPPIHNAKP

A0A6J1DKL1 uncharacterized protein LOC1110213964.6e-2258.46Show/hide
Query:  MAMPYLFLILLIFLSTLHVCDA-RRFRFFESSSSVSRIEPHL-ISQGIWTDQTERSFDESNSDKASYKEIIVGNEMLKGMKKHGKRLVMEF--PKKEKVL
        MA P L  ILL  LSTLH CDA  R + FE S+ VSR+     I Q   TDQ ERS +++   K S   + +G  +LKGMKKH KRL MEF   +KEK++
Subjt:  MAMPYLFLILLIFLSTLHVCDA-RRFRFFESSSSVSRIEPHL-ISQGIWTDQTERSFDESNSDKASYKEIIVGNEMLKGMKKHGKRLVMEF--PKKEKVL

Query:  NSEENEVGEDMVVMDYAQPHRKPPIHNAKP
        + EENEVGEDMVVMDYAQPHRKPPIHN KP
Subjt:  NSEENEVGEDMVVMDYAQPHRKPPIHNAKP

A0A6J1KZM9 uncharacterized protein LOC1114985212.7e-2254.74Show/hide
Query:  MAMPYLFLILLIFLST-LHVCDARRFRFFESSSSVSRIEPHLISQGIWTDQTERSFDESNSDKASYKEIIVGNEMLKGMKKHGKRLVMEFPKK-------
        M MP    + L+FLST LH CDAR  +   S    SR+E  +IS G   DQ +RS D+S S++ S  E  VG E+LKGMKK  +RL ME P +       
Subjt:  MAMPYLFLILLIFLST-LHVCDARRFRFFESSSSVSRIEPHLISQGIWTDQTERSFDESNSDKASYKEIIVGNEMLKGMKKHGKRLVMEFPKK-------

Query:  ---EKVLNSEENEVGEDMVVMDYAQPHRKPPIHNAKP
           +KV+NSEENEVGEDMVVMDYAQPHRKPPIHN KP
Subjt:  ---EKVLNSEENEVGEDMVVMDYAQPHRKPPIHNAKP

SwissProt top hitse value%identityAlignment
Q93VK8 Protein GOLVEN 11.9e-0479.17Show/hide
Query:  EVGEDMVVMDYAQPHRKPPIHNAK
        E GE++VVMDY QPHRKPPIHN K
Subjt:  EVGEDMVVMDYAQPHRKPPIHNAK

Arabidopsis top hitse value%identityAlignment
AT4G16515.1 Encodes a root meristem growth factor (RGF). Belongs to a family of functionally redundant homologous peptides that are secreted, tyrosine-sulfated, and expressed mainly in the stem cell area and the innermost layer of central columella cells. RGFs are required for maintenance of the root stem cell niche and transit amplifying cell proliferation. Members of this family include: At5g60810 (RGF1), At1g13620 (RGF2), At2g04025 (RGF3), At3g30350 (RGF4), At5g51451 (RGF5), At4g16515 (RGF6), At3g02240 (RGF7), At2g03830 (RGF8) and At5g64770 (RGF9).1.3e-0579.17Show/hide
Query:  EVGEDMVVMDYAQPHRKPPIHNAK
        E GE++VVMDY QPHRKPPIHN K
Subjt:  EVGEDMVVMDYAQPHRKPPIHNAK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCATGCCTTATTTGTTTCTCATTCTTTTAATCTTCTTGTCTACTTTGCATGTGTGCGACGCTCGTCGTTTTCGATTCTTTGAGAGTTCGAGTTCTGTTTCGAGGAT
TGAACCGCATTTGATATCCCAGGGTATTTGGACGGATCAGACGGAAAGAAGTTTTGATGAAAGCAATAGTGACAAGGCTTCTTATAAAGAGATTATTGTTGGGAATGAAA
TGTTAAAGGGAATGAAGAAGCATGGGAAGAGGTTGGTAATGGAGTTTCCAAAGAAAGAAAAAGTGTTGAATTCTGAGGAAAATGAAGTTGGAGAAGACATGGTAGTGATG
GATTATGCACAACCCCACAGAAAACCTCCTATTCACAATGCAAAACCCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCCATGCCTTATTTGTTTCTCATTCTTTTAATCTTCTTGTCTACTTTGCATGTGTGCGACGCTCGTCGTTTTCGATTCTTTGAGAGTTCGAGTTCTGTTTCGAGGAT
TGAACCGCATTTGATATCCCAGGGTATTTGGACGGATCAGACGGAAAGAAGTTTTGATGAAAGCAATAGTGACAAGGCTTCTTATAAAGAGATTATTGTTGGGAATGAAA
TGTTAAAGGGAATGAAGAAGCATGGGAAGAGGTTGGTAATGGAGTTTCCAAAGAAAGAAAAAGTGTTGAATTCTGAGGAAAATGAAGTTGGAGAAGACATGGTAGTGATG
GATTATGCACAACCCCACAGAAAACCTCCTATTCACAATGCAAAACCCTAA
Protein sequenceShow/hide protein sequence
MAMPYLFLILLIFLSTLHVCDARRFRFFESSSSVSRIEPHLISQGIWTDQTERSFDESNSDKASYKEIIVGNEMLKGMKKHGKRLVMEFPKKEKVLNSEENEVGEDMVVM
DYAQPHRKPPIHNAKP