; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10003235 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10003235
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description(-)-germacrene D synthase-like
Genome locationChr11:19098308..19099613
RNA-Seq ExpressionHG10003235
SyntenyHG10003235
Gene Ontology termsGO:0016102 - diterpenoid biosynthetic process (biological process)
GO:0000287 - magnesium ion binding (molecular function)
GO:0003677 - DNA binding (molecular function)
GO:0010333 - terpene synthase activity (molecular function)
InterPro domainsIPR005630 - Terpene synthase, metal-binding domain
IPR008949 - Isoprenoid synthase domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008448975.1 PREDICTED: (-)-germacrene D synthase-like [Cucumis melo]1.2e-4073.68Show/hide
Query:  MKELCFARDRVVECCIWALEVYYEPKYSTNRRILLKTISFITLIDDIYDAYATLDELQLFTEAIQRWDINSIEKLSNYMKGLYEAILEFYGEIEQDMCMD
        M++L FARDRVVEC +WALE +YEPKYS NRRILLK I F+T+IDD+YDAYAT+DELQLFTEAIQRWD  SIEKL NYMKGLY+AIL+F+GEIE+DM MD
Subjt:  MKELCFARDRVVECCIWALEVYYEPKYSTNRRILLKTISFITLIDDIYDAYATLDELQLFTEAIQRWDINSIEKLSNYMKGLYEAILEFYGEIEQDMCMD

Query:  HNIT-FAFDCAKEA
        ++   FA D AKE+
Subjt:  HNIT-FAFDCAKEA

XP_011650452.2 (-)-germacrene D synthase isoform X1 [Cucumis sativus]5.4e-4167.44Show/hide
Query:  MKELCFARDRVVECCIWALEVYYEPKYSTNRRILLKTISFITLIDDIYDAYATLDELQLFTEAIQRWDINSIEKLSNYMKGLYEAILEFYGEIEQDMCMD
        M++L FARDRVVEC +W +E Y +P Y  NRRI LK ++F+T+IDD+YD YATLDELQLFT+AIQRWDI SIEKL NYMKGLYEAILEF+GEIEQDM MD
Subjt:  MKELCFARDRVVECCIWALEVYYEPKYSTNRRILLKTISFITLIDDIYDAYATLDELQLFTEAIQRWDINSIEKLSNYMKGLYEAILEFYGEIEQDMCMD

Query:  -HNITFAFDCAKEAENYLRRWLKYHAFWL
         +NI FA DCAKEA     +     A WL
Subjt:  -HNITFAFDCAKEAENYLRRWLKYHAFWL

XP_031738277.1 (-)-germacrene D synthase isoform X2 [Cucumis sativus]5.4e-4167.44Show/hide
Query:  MKELCFARDRVVECCIWALEVYYEPKYSTNRRILLKTISFITLIDDIYDAYATLDELQLFTEAIQRWDINSIEKLSNYMKGLYEAILEFYGEIEQDMCMD
        M++L FARDRVVEC +W +E Y +P Y  NRRI LK ++F+T+IDD+YD YATLDELQLFT+AIQRWDI SIEKL NYMKGLYEAILEF+GEIEQDM MD
Subjt:  MKELCFARDRVVECCIWALEVYYEPKYSTNRRILLKTISFITLIDDIYDAYATLDELQLFTEAIQRWDINSIEKLSNYMKGLYEAILEFYGEIEQDMCMD

Query:  -HNITFAFDCAKEAENYLRRWLKYHAFWL
         +NI FA DCAKEA     +     A WL
Subjt:  -HNITFAFDCAKEAENYLRRWLKYHAFWL

XP_038904196.1 sesquiterpene synthase-like [Benincasa hispida]2.3e-4782.3Show/hide
Query:  MKELCFARDRVVECCIWALEVYYEPKYSTNRRILLKTISFITLIDDIYDAYATLDELQLFTEAIQRWDINSIEKLSNYMKGLYEAILEFYGEIEQDMCMD
        M++L FARDRVVEC IWAL VYYEPKYSTNRRI +K I FIT+IDD+YDAY  LDELQLFT+AIQRWDI S++KL NYMKGLYEAILEFY EIEQDMCMD
Subjt:  MKELCFARDRVVECCIWALEVYYEPKYSTNRRILLKTISFITLIDDIYDAYATLDELQLFTEAIQRWDINSIEKLSNYMKGLYEAILEFYGEIEQDMCMD

Query:  HNITFAFDCAKEA
        +NITFAFDCAKEA
Subjt:  HNITFAFDCAKEA

XP_038904198.1 sesquiterpene synthase-like [Benincasa hispida]2.3e-4782.3Show/hide
Query:  MKELCFARDRVVECCIWALEVYYEPKYSTNRRILLKTISFITLIDDIYDAYATLDELQLFTEAIQRWDINSIEKLSNYMKGLYEAILEFYGEIEQDMCMD
        M++L FARDRVVEC IWAL VYYEPKYSTNRRI +K I FIT+IDD+YDAY  LDELQLFT+AIQRWDI S++KL NYMKGLYEAILEFY EIEQDMCMD
Subjt:  MKELCFARDRVVECCIWALEVYYEPKYSTNRRILLKTISFITLIDDIYDAYATLDELQLFTEAIQRWDINSIEKLSNYMKGLYEAILEFYGEIEQDMCMD

Query:  HNITFAFDCAKEA
        +NITFAFDCAKEA
Subjt:  HNITFAFDCAKEA

TrEMBL top hitse value%identityAlignment
A0A0A0L782 Uncharacterized protein2.6e-4167.44Show/hide
Query:  MKELCFARDRVVECCIWALEVYYEPKYSTNRRILLKTISFITLIDDIYDAYATLDELQLFTEAIQRWDINSIEKLSNYMKGLYEAILEFYGEIEQDMCMD
        M++L FARDRVVEC +W +E Y +P Y  NRRI LK ++F+T+IDD+YD YATLDELQLFT+AIQRWDI SIEKL NYMKGLYEAILEF+GEIEQDM MD
Subjt:  MKELCFARDRVVECCIWALEVYYEPKYSTNRRILLKTISFITLIDDIYDAYATLDELQLFTEAIQRWDINSIEKLSNYMKGLYEAILEFYGEIEQDMCMD

Query:  -HNITFAFDCAKEAENYLRRWLKYHAFWL
         +NI FA DCAKEA     +     A WL
Subjt:  -HNITFAFDCAKEAENYLRRWLKYHAFWL

A0A0A0L791 Uncharacterized protein5.1e-3764.84Show/hide
Query:  MKELC-FARDRVVECCIWALEVYYEPKYSTNRRILLKTISFITLIDDIYDAYATLDELQLFTEAIQRWDINSIEKLSNYMKGLYEAILEFYGEIEQDMCM
        +KEL  FAR RVVE  +WAL + YEPKYS  RRIL+K I+FI+L+DD+YD YATLDELQLFT AIQRWD++ IEKL NYMKGLYE +LE Y EIEQD+  
Subjt:  MKELC-FARDRVVECCIWALEVYYEPKYSTNRRILLKTISFITLIDDIYDAYATLDELQLFTEAIQRWDINSIEKLSNYMKGLYEAILEFYGEIEQDMCM

Query:  DHNITFAFDCAKEAENYLRRWLKYHAFW
        D+NI FAFD AKEA   L +     A W
Subjt:  DHNITFAFDCAKEAENYLRRWLKYHAFW

A0A1S3BLW6 (-)-germacrene D synthase-like5.8e-4173.68Show/hide
Query:  MKELCFARDRVVECCIWALEVYYEPKYSTNRRILLKTISFITLIDDIYDAYATLDELQLFTEAIQRWDINSIEKLSNYMKGLYEAILEFYGEIEQDMCMD
        M++L FARDRVVEC +WALE +YEPKYS NRRILLK I F+T+IDD+YDAYAT+DELQLFTEAIQRWD  SIEKL NYMKGLY+AIL+F+GEIE+DM MD
Subjt:  MKELCFARDRVVECCIWALEVYYEPKYSTNRRILLKTISFITLIDDIYDAYATLDELQLFTEAIQRWDINSIEKLSNYMKGLYEAILEFYGEIEQDMCMD

Query:  HNIT-FAFDCAKEA
        ++   FA D AKE+
Subjt:  HNIT-FAFDCAKEA

A0A6J1CQA8 (-)-germacrene D synthase-like isoform X18.7e-3761.42Show/hide
Query:  MKELCFARDRVVECCIWALEVYYEPKYSTNRRILLKTISFITLIDDIYDAYATLDELQLFTEAIQRWDINSIEKLSNYMKGLYEAILEFYGEIEQDMCMD
        M++  FARDRVVEC  W L +YYEPKYS  RRIL+K I+FI+L+DD+ DAYATLDELQLFT+AI+RWDIN I+KL NYMK + EAIL+ Y E+EQD+  D
Subjt:  MKELCFARDRVVECCIWALEVYYEPKYSTNRRILLKTISFITLIDDIYDAYATLDELQLFTEAIQRWDINSIEKLSNYMKGLYEAILEFYGEIEQDMCMD

Query:  HNITFAFDCAKEAENYLRRWLKYHAFW
        +NI F  DCAKE+     R     A W
Subjt:  HNITFAFDCAKEAENYLRRWLKYHAFW

A0A6J1CQS0 (-)-germacrene D synthase-like isoform X38.7e-3761.42Show/hide
Query:  MKELCFARDRVVECCIWALEVYYEPKYSTNRRILLKTISFITLIDDIYDAYATLDELQLFTEAIQRWDINSIEKLSNYMKGLYEAILEFYGEIEQDMCMD
        M++  FARDRVVEC  W L +YYEPKYS  RRIL+K I+FI+L+DD+ DAYATLDELQLFT+AI+RWDIN I+KL NYMK + EAIL+ Y E+EQD+  D
Subjt:  MKELCFARDRVVECCIWALEVYYEPKYSTNRRILLKTISFITLIDDIYDAYATLDELQLFTEAIQRWDINSIEKLSNYMKGLYEAILEFYGEIEQDMCMD

Query:  HNITFAFDCAKEAENYLRRWLKYHAFW
        +NI F  DCAKE+     R     A W
Subjt:  HNITFAFDCAKEAENYLRRWLKYHAFW

SwissProt top hitse value%identityAlignment
F6M8H4 Probable sesquiterpene synthase4.6e-2750Show/hide
Query:  FARDRVVECCIWALEVYYEPKYSTNRRILLKTISFITLIDDIYDAYATLDELQLFTEAIQRWDINSIEKLSNYMKGLYEAILEFYGEIEQDMCMDHNITF
        FARDR+VE   W L VY+EP+YS  R+I++K  + I+ IDDIYDAY T+DEL+LFTEAI+RWD+ S+++L  YMK  Y++ILE Y EIE++M    ++ F
Subjt:  FARDRVVECCIWALEVYYEPKYSTNRRILLKTISFITLIDDIYDAYATLDELQLFTEAIQRWDINSIEKLSNYMKGLYEAILEFYGEIEQDMCMDHNITF

Query:  AFDCAKEAENYLRRWLKYHAFW
            AKE    L       A W
Subjt:  AFDCAKEAENYLRRWLKYHAFW

F6M8H7 Probable sesquiterpene synthase6.0e-2753.27Show/hide
Query:  FARDRVVECCIWALEVYYEPKYSTNRRILLKTISFITLIDDIYDAYATLDELQLFTEAIQRWDINSIEKLSNYMKGLYEAILEFYGEIEQDMCMDHNITF
        FARDR+VE   W L VY+EP+YS  R+I++K  + I+ IDDIYDAY TLDEL+LFT+A+QRWD+ S+++L  YMK  Y++IL+ Y EIE++M    ++ F
Subjt:  FARDRVVECCIWALEVYYEPKYSTNRRILLKTISFITLIDDIYDAYATLDELQLFTEAIQRWDINSIEKLSNYMKGLYEAILEFYGEIEQDMCMDHNITF

Query:  AFDCAKE
            AKE
Subjt:  AFDCAKE

O65323 5-epiaristolochene synthase3.5e-2751.79Show/hide
Query:  LCFARDRVVECCIWALEVYYEPKYSTNRRILLKTISFITLIDDIYDAYATLDELQLFTEAIQRWDINSIEKLSNYMKGLYEAILEFYGEIEQDMCMD---
        L +ARDRVVEC  WAL VYYEP+YS  R +L+KTI+ I+++DD YDAY T+DEL ++T+ IQRWDI  I+ L +YMK  Y+A+L+ Y + E++M  D   
Subjt:  LCFARDRVVECCIWALEVYYEPKYSTNRRILLKTISFITLIDDIYDAYATLDELQLFTEAIQRWDINSIEKLSNYMKGLYEAILEFYGEIEQDMCMD---

Query:  HNITFAFDCAKE
        H + +A +  KE
Subjt:  HNITFAFDCAKE

Q6Q3H3 (-)-germacrene D synthase1.6e-2749.61Show/hide
Query:  ELCFARDRVVECCIWALEVYYEPKYSTNRRILLKTISFITLIDDIYDAYATLDELQLFTEAIQRWDINSIEKLSNYMKGLYEAILEFYGEIEQDMCMDHN
        +L FARDRVVEC  W L VY+EP++   RRIL K I+  ++IDDIYD Y TL+EL+LFTEA++RWDI++I++L  YM+  Y+A+L  Y EIE++M  +  
Subjt:  ELCFARDRVVECCIWALEVYYEPKYSTNRRILLKTISFITLIDDIYDAYATLDELQLFTEAIQRWDINSIEKLSNYMKGLYEAILEFYGEIEQDMCMDHN

Query:  ITFAFDCAKEA-ENYLRRWLKYHAFWL
         ++    AKEA +N +R + +  A WL
Subjt:  ITFAFDCAKEA-ENYLRRWLKYHAFWL

Q84LF2 5-epi-aristolochene synthase 33.5e-2751.28Show/hide
Query:  LCFARDRVVECCIWALEVYYEPKYSTNRRILLKTISFITLIDDIYDAYATLDELQLFTEAIQRWDINSIEKLSNYMKGLYEAILEFYGEIEQDMC---MD
        L +ARDRVVEC  WAL VY+EP+YS  R IL+KTIS I+++DD +DAY T+ EL+ +T+AIQRWDIN I++L +YMK  Y+AIL+ Y + E+++      
Subjt:  LCFARDRVVECCIWALEVYYEPKYSTNRRILLKTISFITLIDDIYDAYATLDELQLFTEAIQRWDINSIEKLSNYMKGLYEAILEFYGEIEQDMC---MD

Query:  HNITFAFDCAKE-AENY
        H +  A +  KE  +NY
Subjt:  HNITFAFDCAKE-AENY

Arabidopsis top hitse value%identityAlignment
AT2G24210.1 terpene synthase 105.2e-1844.33Show/hide
Query:  KELCFARDRVVECCIWALEVYYEPKYSTNRRILLKTISFITLIDDIYDAYATLDELQLFTEAIQRWDINSIEKLSNYMKGLYEAILEFYGEIEQDMC
        K+L FARDR+VE   W +    EP+Y   R+ + K  + +T IDDIYD Y TL+ELQLFT A + WDIN +++L  YM+  +   L  Y E+    C
Subjt:  KELCFARDRVVECCIWALEVYYEPKYSTNRRILLKTISFITLIDDIYDAYATLDELQLFTEAIQRWDINSIEKLSNYMKGLYEAILEFYGEIEQDMC

AT3G14490.1 Terpenoid cyclases/Protein prenyltransferases superfamily protein2.0e-1742.11Show/hide
Query:  ELCFARDRVVECCIWALEVYYEPKYSTNRRILLKTISFITLIDDIYDAYATLDELQLFTEAIQRWDINSIEKLSNYMKGLYEAILEFYGEIEQDM
        +L + RDR+VE    AL +Y+EP+YS  R I+ K    +T+ +D  DAY TL E+    ++ QRWD+  IEKL +Y+K ++  + E   EIEQ+M
Subjt:  ELCFARDRVVECCIWALEVYYEPKYSTNRRILLKTISFITLIDDIYDAYATLDELQLFTEAIQRWDINSIEKLSNYMKGLYEAILEFYGEIEQDM

AT4G16730.1 terpene synthase 023.0e-2145.26Show/hide
Query:  MKELCFARDRVVECCIWALEVYYEPKYSTNRRILLKTISFITLIDDIYDAYATLDELQLFTEAIQRWDINSIEKLSNYMKGLYEAILEFYGEIEQ
        MK+L F RDR+ E   W + ++YEP++   R+IL K    I ++DDIYD Y TL+EL+LFT  +++WD+N +E+L NYM+  +   L  Y EI Q
Subjt:  MKELCFARDRVVECCIWALEVYYEPKYSTNRRILLKTISFITLIDDIYDAYATLDELQLFTEAIQRWDINSIEKLSNYMKGLYEAILEFYGEIEQ

AT4G16740.1 terpene synthase 031.8e-1850.63Show/hide
Query:  KELCFARDRVVECCIWALEVYYEPKYSTNRRILLKTISFITLIDDIYDAYATLDELQLFTEAIQRWDINSIEKLSNYMK
        K L F RDR+ E    ++ V YEP+++ +R++L K    IT IDDIYD Y TL+ELQLFT  +++WD+N +E+L NYMK
Subjt:  KELCFARDRVVECCIWALEVYYEPKYSTNRRILLKTISFITLIDDIYDAYATLDELQLFTEAIQRWDINSIEKLSNYMK

AT4G16740.2 terpene synthase 031.8e-1850.63Show/hide
Query:  KELCFARDRVVECCIWALEVYYEPKYSTNRRILLKTISFITLIDDIYDAYATLDELQLFTEAIQRWDINSIEKLSNYMK
        K L F RDR+ E    ++ V YEP+++ +R++L K    IT IDDIYD Y TL+ELQLFT  +++WD+N +E+L NYMK
Subjt:  KELCFARDRVVECCIWALEVYYEPKYSTNRRILLKTISFITLIDDIYDAYATLDELQLFTEAIQRWDINSIEKLSNYMK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAGAATTATGTTTTGCACGAGATAGGGTGGTGGAGTGCTGTATTTGGGCATTGGAAGTATATTATGAACCAAAGTACTCTACCAATAGAAGAATACTTCTCAAAAC
TATTTCATTCATAACCCTTATTGATGATATATATGATGCATACGCCACATTGGATGAACTTCAACTTTTCACCGAAGCAATTCAAAGATGGGATATCAATAGCATTGAGA
AGCTCTCAAATTACATGAAAGGTCTTTATGAAGCTATACTTGAATTTTATGGAGAGATTGAACAAGATATGTGCATGGATCACAATATTACATTTGCATTTGATTGCGCA
AAAGAAGCGGAAAATTACTTAAGAAGATGGTTAAAATACCATGCTTTTTGGCTGTAG
mRNA sequenceShow/hide mRNA sequence
ATGAAAGAATTATGTTTTGCACGAGATAGGGTGGTGGAGTGCTGTATTTGGGCATTGGAAGTATATTATGAACCAAAGTACTCTACCAATAGAAGAATACTTCTCAAAAC
TATTTCATTCATAACCCTTATTGATGATATATATGATGCATACGCCACATTGGATGAACTTCAACTTTTCACCGAAGCAATTCAAAGATGGGATATCAATAGCATTGAGA
AGCTCTCAAATTACATGAAAGGTCTTTATGAAGCTATACTTGAATTTTATGGAGAGATTGAACAAGATATGTGCATGGATCACAATATTACATTTGCATTTGATTGCGCA
AAAGAAGCGGAAAATTACTTAAGAAGATGGTTAAAATACCATGCTTTTTGGCTGTAG
Protein sequenceShow/hide protein sequence
MKELCFARDRVVECCIWALEVYYEPKYSTNRRILLKTISFITLIDDIYDAYATLDELQLFTEAIQRWDINSIEKLSNYMKGLYEAILEFYGEIEQDMCMDHNITFAFDCA
KEAENYLRRWLKYHAFWL