; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10003238 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10003238
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description(-)-germacrene D synthase-like
Genome locationChr11:19111204..19113996
RNA-Seq ExpressionHG10003238
SyntenyHG10003238
Gene Ontology termsGO:0016102 - diterpenoid biosynthetic process (biological process)
GO:0000287 - magnesium ion binding (molecular function)
GO:0010333 - terpene synthase activity (molecular function)
InterPro domainsIPR008949 - Isoprenoid synthase domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK19427.1 (-)-germacrene D synthase-like [Cucumis melo var. makuwa]2.8e-4348.84Show/hide
Query:  LPEYMKVFYGVIFQFYEEIEKDINKDNI-FPYAIHYAKEGFEQE--------------------------------------------------------
        LP+YMK+FYGVI + YEEIEKDINKDN+  PYAIHYAKEG +++                                                        
Subjt:  LPEYMKVFYGVIFQFYEEIEKDINKDNI-FPYAIHYAKEGFEQE--------------------------------------------------------

Query:  -----------------------RGDVGSAVECYMKEYGISEEETLVELKKKVIKAWKDIIKDYIKSTNISNKILLCVLNLARLSDLFYKKEDGYTFVDG
                               RGDVGSAVEC+MK++G+SEEETLVEL+ +VIKAW+DI +DYIK+TNISN+ILL VLNLARLSDLFYK+EDGYTFVD 
Subjt:  -----------------------RGDVGSAVECYMKEYGISEEETLVELKKKVIKAWKDIIKDYIKSTNISNKILLCVLNLARLSDLFYKKEDGYTFVDG

Query:  ATKHFITSLIIEPLP
         TKHFI S+I+EPLP
Subjt:  ATKHFITSLIIEPLP

XP_008449179.2 PREDICTED: LOW QUALITY PROTEIN: (-)-germacrene D synthase-like [Cucumis melo]6.6e-4549.77Show/hide
Query:  LPEYMKVFYGVIFQFYEEIEKDINKDNI-FPYAIHYAKEG------------------------------------------------------------
        LP+YMK+FYGVI + YEEIEKDINKDN+  PYAIHYAKEG                                                            
Subjt:  LPEYMKVFYGVIFQFYEEIEKDINKDNI-FPYAIHYAKEG------------------------------------------------------------

Query:  -----------------------FEQERGDVGSAVECYMKEYGISEEETLVELKKKVIKAWKDIIKDYIKSTNISNKILLCVLNLARLSDLFYKKEDGYT
                               FEQERGDVGSAVEC+MK++G+SEEETLVEL+ +VIKAW+DI +DYIK+TNISN+ILL VLNLARLSDLFYK+EDGYT
Subjt:  -----------------------FEQERGDVGSAVECYMKEYGISEEETLVELKKKVIKAWKDIIKDYIKSTNISNKILLCVLNLARLSDLFYKKEDGYT

Query:  FVDGATKHFITSLIIEPLP
        FVD  TKHFI S+I+EPLP
Subjt:  FVDGATKHFITSLIIEPLP

XP_011650453.1 (-)-germacrene D synthase [Cucumis sativus]8.6e-3743.84Show/hide
Query:  LPEYMKVFYGVIFQFYEEIEKDINKDNIFPYAIHYAKEG-------------------------------------------------------------
        LP+ MKV Y  I + YEEIEKDINKDNI PYAIHYAKEG                                                             
Subjt:  LPEYMKVFYGVIFQFYEEIEKDINKDNIFPYAIHYAKEG-------------------------------------------------------------

Query:  ----------------------FEQERGDVGSAVECYMKEYGISEEETLVELKKKVIKAWKDIIKDYI-KSTNISNKILLCVLNLARLSDLFYKKEDGYT
                              +EQ+RG + SAVECYMK++ +SEE+ +VEL K++ KAWKD+I+DYI KST +SN IL+ VLNL RLSDLFYKKEDGYT
Subjt:  ----------------------FEQERGDVGSAVECYMKEYGISEEETLVELKKKVIKAWKDIIKDYI-KSTNISNKILLCVLNLARLSDLFYKKEDGYT

Query:  FVDGATKHFITSLIIEPLP
        FV G TKHFITS++I+P+P
Subjt:  FVDGATKHFITSLIIEPLP

XP_022945798.1 vetispiradiene synthase 2-like isoform X1 [Cucurbita moschata]9.5e-3642.66Show/hide
Query:  LPEYMKVFYGVIFQFYEEIEKDINKDNIFPYAIHYAKEG-------------------------------------------------------------
        LPEYMK+FY VI + YEE E+D++KD I  YAIHYAKE                                                              
Subjt:  LPEYMKVFYGVIFQFYEEIEKDINKDNIFPYAIHYAKEG-------------------------------------------------------------

Query:  ----------------------FEQERGDVGSAVECYMKEYGISEEETLVELKKKVIKAWKDIIKDYIKSTNISNKILLCVLNLARLSDLFYKKEDGYTF
                              FEQERGDVGSAVECYMK++G+SEEETLV L+ +V++AWKD+I+DY+KS+NIS +I + VLNLARLSD FYK+EDGYTF
Subjt:  ----------------------FEQERGDVGSAVECYMKEYGISEEETLVELKKKVIKAWKDIIKDYIKSTNISNKILLCVLNLARLSDLFYKKEDGYTF

Query:  VDGATKHFITSLIIEPLP
         DG TK FI S +++P+P
Subjt:  VDGATKHFITSLIIEPLP

XP_022945806.1 (-)-germacrene D synthase-like isoform X2 [Cucurbita moschata]9.5e-3642.66Show/hide
Query:  LPEYMKVFYGVIFQFYEEIEKDINKDNIFPYAIHYAKEG-------------------------------------------------------------
        LPEYMK+FY VI + YEE E+D++KD I  YAIHYAKE                                                              
Subjt:  LPEYMKVFYGVIFQFYEEIEKDINKDNIFPYAIHYAKEG-------------------------------------------------------------

Query:  ----------------------FEQERGDVGSAVECYMKEYGISEEETLVELKKKVIKAWKDIIKDYIKSTNISNKILLCVLNLARLSDLFYKKEDGYTF
                              FEQERGDVGSAVECYMK++G+SEEETLV L+ +V++AWKD+I+DY+KS+NIS +I + VLNLARLSD FYK+EDGYTF
Subjt:  ----------------------FEQERGDVGSAVECYMKEYGISEEETLVELKKKVIKAWKDIIKDYIKSTNISNKILLCVLNLARLSDLFYKKEDGYTF

Query:  VDGATKHFITSLIIEPLP
         DG TK FI S +++P+P
Subjt:  VDGATKHFITSLIIEPLP

TrEMBL top hitse value%identityAlignment
A0A0A0L1X6 Uncharacterized protein4.2e-3743.84Show/hide
Query:  LPEYMKVFYGVIFQFYEEIEKDINKDNIFPYAIHYAKEG-------------------------------------------------------------
        LP+ MKV Y  I + YEEIEKDINKDNI PYAIHYAKEG                                                             
Subjt:  LPEYMKVFYGVIFQFYEEIEKDINKDNIFPYAIHYAKEG-------------------------------------------------------------

Query:  ----------------------FEQERGDVGSAVECYMKEYGISEEETLVELKKKVIKAWKDIIKDYI-KSTNISNKILLCVLNLARLSDLFYKKEDGYT
                              +EQ+RG + SAVECYMK++ +SEE+ +VEL K++ KAWKD+I+DYI KST +SN IL+ VLNL RLSDLFYKKEDGYT
Subjt:  ----------------------FEQERGDVGSAVECYMKEYGISEEETLVELKKKVIKAWKDIIKDYI-KSTNISNKILLCVLNLARLSDLFYKKEDGYT

Query:  FVDGATKHFITSLIIEPLP
        FV G TKHFITS++I+P+P
Subjt:  FVDGATKHFITSLIIEPLP

A0A1S3BMD3 LOW QUALITY PROTEIN: (-)-germacrene D synthase-like3.2e-4549.77Show/hide
Query:  LPEYMKVFYGVIFQFYEEIEKDINKDNI-FPYAIHYAKEG------------------------------------------------------------
        LP+YMK+FYGVI + YEEIEKDINKDN+  PYAIHYAKEG                                                            
Subjt:  LPEYMKVFYGVIFQFYEEIEKDINKDNI-FPYAIHYAKEG------------------------------------------------------------

Query:  -----------------------FEQERGDVGSAVECYMKEYGISEEETLVELKKKVIKAWKDIIKDYIKSTNISNKILLCVLNLARLSDLFYKKEDGYT
                               FEQERGDVGSAVEC+MK++G+SEEETLVEL+ +VIKAW+DI +DYIK+TNISN+ILL VLNLARLSDLFYK+EDGYT
Subjt:  -----------------------FEQERGDVGSAVECYMKEYGISEEETLVELKKKVIKAWKDIIKDYIKSTNISNKILLCVLNLARLSDLFYKKEDGYT

Query:  FVDGATKHFITSLIIEPLP
        FVD  TKHFI S+I+EPLP
Subjt:  FVDGATKHFITSLIIEPLP

A0A5D3D784 (-)-germacrene D synthase-like1.3e-4348.84Show/hide
Query:  LPEYMKVFYGVIFQFYEEIEKDINKDNI-FPYAIHYAKEGFEQE--------------------------------------------------------
        LP+YMK+FYGVI + YEEIEKDINKDN+  PYAIHYAKEG +++                                                        
Subjt:  LPEYMKVFYGVIFQFYEEIEKDINKDNI-FPYAIHYAKEGFEQE--------------------------------------------------------

Query:  -----------------------RGDVGSAVECYMKEYGISEEETLVELKKKVIKAWKDIIKDYIKSTNISNKILLCVLNLARLSDLFYKKEDGYTFVDG
                               RGDVGSAVEC+MK++G+SEEETLVEL+ +VIKAW+DI +DYIK+TNISN+ILL VLNLARLSDLFYK+EDGYTFVD 
Subjt:  -----------------------RGDVGSAVECYMKEYGISEEETLVELKKKVIKAWKDIIKDYIKSTNISNKILLCVLNLARLSDLFYKKEDGYTFVDG

Query:  ATKHFITSLIIEPLP
         TKHFI S+I+EPLP
Subjt:  ATKHFITSLIIEPLP

A0A6J1G1W9 (-)-germacrene D synthase-like isoform X24.6e-3642.66Show/hide
Query:  LPEYMKVFYGVIFQFYEEIEKDINKDNIFPYAIHYAKEG-------------------------------------------------------------
        LPEYMK+FY VI + YEE E+D++KD I  YAIHYAKE                                                              
Subjt:  LPEYMKVFYGVIFQFYEEIEKDINKDNIFPYAIHYAKEG-------------------------------------------------------------

Query:  ----------------------FEQERGDVGSAVECYMKEYGISEEETLVELKKKVIKAWKDIIKDYIKSTNISNKILLCVLNLARLSDLFYKKEDGYTF
                              FEQERGDVGSAVECYMK++G+SEEETLV L+ +V++AWKD+I+DY+KS+NIS +I + VLNLARLSD FYK+EDGYTF
Subjt:  ----------------------FEQERGDVGSAVECYMKEYGISEEETLVELKKKVIKAWKDIIKDYIKSTNISNKILLCVLNLARLSDLFYKKEDGYTF

Query:  VDGATKHFITSLIIEPLP
         DG TK FI S +++P+P
Subjt:  VDGATKHFITSLIIEPLP

A0A6J1G202 vetispiradiene synthase 2-like isoform X14.6e-3642.66Show/hide
Query:  LPEYMKVFYGVIFQFYEEIEKDINKDNIFPYAIHYAKEG-------------------------------------------------------------
        LPEYMK+FY VI + YEE E+D++KD I  YAIHYAKE                                                              
Subjt:  LPEYMKVFYGVIFQFYEEIEKDINKDNIFPYAIHYAKEG-------------------------------------------------------------

Query:  ----------------------FEQERGDVGSAVECYMKEYGISEEETLVELKKKVIKAWKDIIKDYIKSTNISNKILLCVLNLARLSDLFYKKEDGYTF
                              FEQERGDVGSAVECYMK++G+SEEETLV L+ +V++AWKD+I+DY+KS+NIS +I + VLNLARLSD FYK+EDGYTF
Subjt:  ----------------------FEQERGDVGSAVECYMKEYGISEEETLVELKKKVIKAWKDIIKDYIKSTNISNKILLCVLNLARLSDLFYKKEDGYTF

Query:  VDGATKHFITSLIIEPLP
         DG TK FI S +++P+P
Subjt:  VDGATKHFITSLIIEPLP

SwissProt top hitse value%identityAlignment
B5A435 Sesquiterpene synthase1.1e-2149.47Show/hide
Query:  FEQERGDVGSAVECYMKEYGISEEETLVELKKKVIKAWKDIIKDYIKSTNISNKILLCVLNLARLSDLFYKKEDGYTFVDGATKHFITSLIIEPL
        FEQERG V S +ECYMK+YG++EEE   E +K+++KAWKDI ++ ++   +   +L+ +LNL R+ D+ YK EDGYT V  A K  I SL+I+P+
Subjt:  FEQERGDVGSAVECYMKEYGISEEETLVELKKKVIKAWKDIIKDYIKSTNISNKILLCVLNLARLSDLFYKKEDGYTFVDGATKHFITSLIIEPL

B6SCF6 Germacrene-A synthase3.3e-2350Show/hide
Query:  AKEGFEQERGDVGSAVECYMKEYGISEEETLVELKKKVIKAWKDIIKDYIKSTNISNKILLCVLNLARLSDLFYKKEDGYTFVDGATKHFITSLIIEPLP
        A+  FEQE+ +  SAVECYMK+YG+SEEE   EL K+V+ AWK+I ++ +K T +++ IL+  LN ++  DLFYK  DGYT V   TKH + +L+I P+P
Subjt:  AKEGFEQERGDVGSAVECYMKEYGISEEETLVELKKKVIKAWKDIIKDYIKSTNISNKILLCVLNLARLSDLFYKKEDGYTFVDGATKHFITSLIIEPLP

F6M8H5 Probable sesquiterpene synthase6.2e-2249.47Show/hide
Query:  FEQERGDVGSAVECYMKEYGISEEETLVELKKKVIKAWKDIIKDYIKSTNISNKILLCVLNLARLSDLFYKKEDGYTFVDGATKHFITSLIIEPL
        FEQERG V S +ECYMK+YG++EEE   E +K+++KAWKDI ++ ++   +   +L+ +LNL R+ D+ YK EDGYT V  A K  I SL+I+P+
Subjt:  FEQERGDVGSAVECYMKEYGISEEETLVELKKKVIKAWKDIIKDYIKSTNISNKILLCVLNLARLSDLFYKKEDGYTFVDGATKHFITSLIIEPL

F6M8H7 Probable sesquiterpene synthase2.4e-2149.47Show/hide
Query:  FEQERGDVGSAVECYMKEYGISEEETLVELKKKVIKAWKDIIKDYIKSTNISNKILLCVLNLARLSDLFYKKEDGYTFVDGATKHFITSLIIEPL
        FEQERG V S +ECYMK+YG++EEE   E +K+++KAWKDI ++ ++   +   +L  +LNL R+ D+ YK EDGYT V  A K  I SL+I+P+
Subjt:  FEQERGDVGSAVECYMKEYGISEEETLVELKKKVIKAWKDIIKDYIKSTNISNKILLCVLNLARLSDLFYKKEDGYTFVDGATKHFITSLIIEPL

Q6Q3H3 (-)-germacrene D synthase2.4e-2152.08Show/hide
Query:  FEQERGDVGSAVECYMKEYGISEEETLVELKKKVIKAWKDIIKDYIKSTNISNKILLCVLNLARLSDLFYKKEDGYTFVDGATKHFITSLIIEPLP
        FEQ+RG V SAVECYMK++G SE+ET  E  + V +AWKDI ++ +  T +   IL+ VLNLAR+ D+ YK EDGYT      K F+TS++I+P+P
Subjt:  FEQERGDVGSAVECYMKEYGISEEETLVELKKKVIKAWKDIIKDYIKSTNISNKILLCVLNLARLSDLFYKKEDGYTFVDGATKHFITSLIIEPLP

Arabidopsis top hitse value%identityAlignment
AT1G31950.1 Terpenoid cyclases/Protein prenyltransferases superfamily protein2.4e-1638.54Show/hide
Query:  EQERGDVGSAVECYMKEYGISEEETLVELKKKVIKAWKDIIKDYIKS-TNISNKILLCVLNLARLSDLFYKKEDGYTFVDGATKHFITSLIIEPLP
        E  RG+V + + CYMK+YG+++EE   EL+K  +   K ++++++ S  ++  ++LL  LN+AR+ D+FY + DGY+   G  +HF+TSL + P+P
Subjt:  EQERGDVGSAVECYMKEYGISEEETLVELKKKVIKAWKDIIKDYIKS-TNISNKILLCVLNLARLSDLFYKKEDGYTFVDGATKHFITSLIIEPLP

AT1G33750.1 Terpenoid cyclases/Protein prenyltransferases superfamily protein1.4e-1335.35Show/hide
Query:  GFEQE--RGDVGSAVECYMKEYGISEEETLVELKKKVIKAWKDIIKDYIKSTNISNKILLCVLNLARLSDLFYKKEDGYTFVDGATKHFITSLIIEPLP
        GFE+E  RG+V + V CY+K++ +++E  + E+KK +   +K ++++++   ++S  IL+   N+ RL +L+Y++ D +T  +G  K  ITSL   PLP
Subjt:  GFEQE--RGDVGSAVECYMKEYGISEEETLVELKKKVIKAWKDIIKDYIKSTNISNKILLCVLNLARLSDLFYKKEDGYTFVDGATKHFITSLIIEPLP

AT3G14520.1 Terpenoid cyclases/Protein prenyltransferases superfamily protein5.8e-1538.54Show/hide
Query:  EQERGDVGSAVECYMKEYGISEEETLVELKKKVIKAWKDIIKDYIKS-TNISNKILLCVLNLARLSDLFYKKEDGYTFVDGATKHFITSLIIEPLP
        E  RG+V + + CYMK+YG+++EE   EL+K      K ++++++ S  ++  ++LL  LN ARL D+ Y + DGY+   G  +HF+TSL + P+P
Subjt:  EQERGDVGSAVECYMKEYGISEEETLVELKKKVIKAWKDIIKDYIKS-TNISNKILLCVLNLARLSDLFYKKEDGYTFVDGATKHFITSLIIEPLP

AT3G14540.1 Terpenoid cyclases/Protein prenyltransferases superfamily protein1.2e-1539.58Show/hide
Query:  EQERGDVGSAVECYMKEYGISEEETLVELKKKVIKAWKDIIKDYIKS-TNISNKILLCVLNLARLSDLFYKKEDGYTFVDGATKHFITSLIIEPLP
        E  RG+V + + CYMK+YG+++EE   EL+K  I   K ++++++ S   +  ++LL  LN ARL D+ Y + DGY+   G  +HF+TSL + P+P
Subjt:  EQERGDVGSAVECYMKEYGISEEETLVELKKKVIKAWKDIIKDYIKS-TNISNKILLCVLNLARLSDLFYKKEDGYTFVDGATKHFITSLIIEPLP

AT3G29410.1 Terpenoid cyclases/Protein prenyltransferases superfamily protein3.4e-1538.78Show/hide
Query:  FEQE--RGDVGSAVECYMKEYGISEEETLVELKKKVIKAWKDIIKDYIKSTNISNKILLCVLNLARLSDLFYKKEDGYTFVDGATKHFITSLIIEPLP
        FEQE  RG+V + V CYMK++G+++E  + EL+K   +++K +I++++ S  +  +IL+  +N+AR+ DLFYK+ DG+   D      I SL + P+P
Subjt:  FEQE--RGDVGSAVECYMKEYGISEEETLVELKKKVIKAWKDIIKDYIKSTNISNKILLCVLNLARLSDLFYKKEDGYTFVDGATKHFITSLIIEPLP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTCCCAGAGTACATGAAAGTATTTTATGGAGTTATATTTCAATTTTATGAGGAGATTGAAAAAGATATCAACAAGGACAACATATTTCCATATGCTATTCACTATGC
AAAAGAAGGGTTTGAACAAGAGAGAGGTGATGTTGGCTCAGCGGTTGAATGTTACATGAAAGAATATGGAATATCAGAAGAAGAAACTTTGGTTGAATTGAAAAAGAAAG
TGATTAAAGCATGGAAAGACATAATAAAAGACTATATTAAATCTACCAACATTTCAAATAAAATTCTTTTATGTGTGCTGAATCTTGCACGACTCTCCGACCTCTTCTAT
AAAAAAGAAGATGGTTACACATTTGTTGATGGAGCAACCAAACATTTCATTACCTCTCTCATTATAGAACCTTTACCAAATTGA
mRNA sequenceShow/hide mRNA sequence
ATGCTCCCAGAGTACATGAAAGTATTTTATGGAGTTATATTTCAATTTTATGAGGAGATTGAAAAAGATATCAACAAGGACAACATATTTCCATATGCTATTCACTATGC
AAAAGAAGGGTTTGAACAAGAGAGAGGTGATGTTGGCTCAGCGGTTGAATGTTACATGAAAGAATATGGAATATCAGAAGAAGAAACTTTGGTTGAATTGAAAAAGAAAG
TGATTAAAGCATGGAAAGACATAATAAAAGACTATATTAAATCTACCAACATTTCAAATAAAATTCTTTTATGTGTGCTGAATCTTGCACGACTCTCCGACCTCTTCTAT
AAAAAAGAAGATGGTTACACATTTGTTGATGGAGCAACCAAACATTTCATTACCTCTCTCATTATAGAACCTTTACCAAATTGA
Protein sequenceShow/hide protein sequence
MLPEYMKVFYGVIFQFYEEIEKDINKDNIFPYAIHYAKEGFEQERGDVGSAVECYMKEYGISEEETLVELKKKVIKAWKDIIKDYIKSTNISNKILLCVLNLARLSDLFY
KKEDGYTFVDGATKHFITSLIIEPLPN