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HG10003245 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10003245
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description(-)-germacrene D synthase-like
Genome locationChr11:19253791..19254024
RNA-Seq ExpressionHG10003245
SyntenyHG10003245
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0016102 - diterpenoid biosynthetic process (biological process)
GO:0005634 - nucleus (cellular component)
GO:0000287 - magnesium ion binding (molecular function)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
GO:0010333 - terpene synthase activity (molecular function)
GO:0043565 - sequence-specific DNA binding (molecular function)
InterPro domainsIPR005630 - Terpene synthase, metal-binding domain
IPR008949 - Isoprenoid synthase domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022143456.1 (-)-germacrene D synthase-like isoform X1 [Momordica charantia]4.7e-2472.73Show/hide
Query:  MKRQCRAYMMETKWFYEGGVPIMEEYMKVATTSAAYYNFASVSFLALGNVASKEVFKWAQSDPMLLKATGIIGRLFN
        MKRQCRAY++E KWF++G VP MEEYM+VA  SAAYY FASVSFL +G+VASKE F+W  SDPMLL ATG+IGRL N
Subjt:  MKRQCRAYMMETKWFYEGGVPIMEEYMKVATTSAAYYNFASVSFLALGNVASKEVFKWAQSDPMLLKATGIIGRLFN

XP_022143457.1 (-)-germacrene D synthase-like isoform X2 [Momordica charantia]4.7e-2472.73Show/hide
Query:  MKRQCRAYMMETKWFYEGGVPIMEEYMKVATTSAAYYNFASVSFLALGNVASKEVFKWAQSDPMLLKATGIIGRLFN
        MKRQCRAY++E KWF++G VP MEEYM+VA  SAAYY FASVSFL +G+VASKE F+W  SDPMLL ATG+IGRL N
Subjt:  MKRQCRAYMMETKWFYEGGVPIMEEYMKVATTSAAYYNFASVSFLALGNVASKEVFKWAQSDPMLLKATGIIGRLFN

XP_022143458.1 (-)-germacrene D synthase-like isoform X3 [Momordica charantia]4.7e-2472.73Show/hide
Query:  MKRQCRAYMMETKWFYEGGVPIMEEYMKVATTSAAYYNFASVSFLALGNVASKEVFKWAQSDPMLLKATGIIGRLFN
        MKRQCRAY++E KWF++G VP MEEYM+VA  SAAYY FASVSFL +G+VASKE F+W  SDPMLL ATG+IGRL N
Subjt:  MKRQCRAYMMETKWFYEGGVPIMEEYMKVATTSAAYYNFASVSFLALGNVASKEVFKWAQSDPMLLKATGIIGRLFN

XP_038877743.1 LOW QUALITY PROTEIN: (-)-germacrene D synthase-like [Benincasa hispida]2.1e-2472.73Show/hide
Query:  MKRQCRAYMMETKWFYEGGVPIMEEYMKVATTSAAYYNFASVSFLALGNVASKEVFKWAQSDPMLLKATGIIGRLFN
        MK QCRAY+ME KWF +  +P MEEYMKVA  SAAYY  AS+SF+ALGNVASKE+F+WAQ+DPML+KATG+IGRL N
Subjt:  MKRQCRAYMMETKWFYEGGVPIMEEYMKVATTSAAYYNFASVSFLALGNVASKEVFKWAQSDPMLLKATGIIGRLFN

XP_038903578.1 LOW QUALITY PROTEIN: (-)-germacrene D synthase-like [Benincasa hispida]3.5e-2780.52Show/hide
Query:  MKRQCRAYMMETKWFYEGGVPIMEEYMKVATTSAAYYNFASVSFLALGNVASKEVFKWAQSDPMLLKATGIIGRLFN
        MKRQCRAY ME KWF EG +P MEEYMKVA  SAAYY FASVSFLALGN+AS+EVF+WAQ+DPMLLKATG+IGRL N
Subjt:  MKRQCRAYMMETKWFYEGGVPIMEEYMKVATTSAAYYNFASVSFLALGNVASKEVFKWAQSDPMLLKATGIIGRLFN

TrEMBL top hitse value%identityAlignment
A0A6J1CP21 valencene synthase-like isoform X21.9e-2370.13Show/hide
Query:  MKRQCRAYMMETKWFYEGGVPIMEEYMKVATTSAAYYNFASVSFLALGNVASKEVFKWAQSDPMLLKATGIIGRLFN
        MKRQCRAY  E KWFYEG VP MEEYM+VA+ SA+Y+ FA+ SFL +G+VAS EVF+WA+SDP+LL ATG+IGRL N
Subjt:  MKRQCRAYMMETKWFYEGGVPIMEEYMKVATTSAAYYNFASVSFLALGNVASKEVFKWAQSDPMLLKATGIIGRLFN

A0A6J1CPK3 (-)-germacrene D synthase-like isoform X11.9e-2370.13Show/hide
Query:  MKRQCRAYMMETKWFYEGGVPIMEEYMKVATTSAAYYNFASVSFLALGNVASKEVFKWAQSDPMLLKATGIIGRLFN
        MKRQCRAY  E KWFYEG VP MEEYM+VA+ SA+Y+ FA+ SFL +G+VAS EVF+WA+SDP+LL ATG+IGRL N
Subjt:  MKRQCRAYMMETKWFYEGGVPIMEEYMKVATTSAAYYNFASVSFLALGNVASKEVFKWAQSDPMLLKATGIIGRLFN

A0A6J1CQA8 (-)-germacrene D synthase-like isoform X12.3e-2472.73Show/hide
Query:  MKRQCRAYMMETKWFYEGGVPIMEEYMKVATTSAAYYNFASVSFLALGNVASKEVFKWAQSDPMLLKATGIIGRLFN
        MKRQCRAY++E KWF++G VP MEEYM+VA  SAAYY FASVSFL +G+VASKE F+W  SDPMLL ATG+IGRL N
Subjt:  MKRQCRAYMMETKWFYEGGVPIMEEYMKVATTSAAYYNFASVSFLALGNVASKEVFKWAQSDPMLLKATGIIGRLFN

A0A6J1CQS0 (-)-germacrene D synthase-like isoform X32.3e-2472.73Show/hide
Query:  MKRQCRAYMMETKWFYEGGVPIMEEYMKVATTSAAYYNFASVSFLALGNVASKEVFKWAQSDPMLLKATGIIGRLFN
        MKRQCRAY++E KWF++G VP MEEYM+VA  SAAYY FASVSFL +G+VASKE F+W  SDPMLL ATG+IGRL N
Subjt:  MKRQCRAYMMETKWFYEGGVPIMEEYMKVATTSAAYYNFASVSFLALGNVASKEVFKWAQSDPMLLKATGIIGRLFN

A0A6J1CQW1 (-)-germacrene D synthase-like isoform X22.3e-2472.73Show/hide
Query:  MKRQCRAYMMETKWFYEGGVPIMEEYMKVATTSAAYYNFASVSFLALGNVASKEVFKWAQSDPMLLKATGIIGRLFN
        MKRQCRAY++E KWF++G VP MEEYM+VA  SAAYY FASVSFL +G+VASKE F+W  SDPMLL ATG+IGRL N
Subjt:  MKRQCRAYMMETKWFYEGGVPIMEEYMKVATTSAAYYNFASVSFLALGNVASKEVFKWAQSDPMLLKATGIIGRLFN

SwissProt top hitse value%identityAlignment
B9SCB6 Probable terpene synthase 21.5e-1241.56Show/hide
Query:  MKRQCRAYMMETKWFYEGGVPIMEEYMKVATTSAAYYNFASVSFLALGNVASKEVFKWAQSDPMLLKATGIIGRLFN
        MK+  +AY++E  W  +  VP M+EYM +A  S AY      SF+ +G++A+KEVF WA +DP +++   II RL +
Subjt:  MKRQCRAYMMETKWFYEGGVPIMEEYMKVATTSAAYYNFASVSFLALGNVASKEVFKWAQSDPMLLKATGIIGRLFN

Q6Q3H2 Valencene synthase3.5e-1445.45Show/hide
Query:  MKRQCRAYMMETKWFYEGGVPIMEEYMKVATTSAAYYNFASVSFLALGNVASKEVFKWAQSDPMLLKATGIIGRLFN
        MK Q RAY  E KW +E  VP  EEYM+VA  S+ Y   A+ SF+ +G +A+KE F W  SDP ++ ++  I RL +
Subjt:  MKRQCRAYMMETKWFYEGGVPIMEEYMKVATTSAAYYNFASVSFLALGNVASKEVFKWAQSDPMLLKATGIIGRLFN

Q6Q3H3 (-)-germacrene D synthase9.6e-1242.86Show/hide
Query:  MKRQCRAYMMETKWFYEGGVPIMEEYMKVATTSAAYYNFASVSFLALGNVASKEVFKWAQSDPMLLKATGIIGRLFN
        MK Q RAY  E KW     +P MEEYM VA  ++AY   A+ SF+ +G+  +KE F W  S P +++A+ I+ RL +
Subjt:  MKRQCRAYMMETKWFYEGGVPIMEEYMKVATTSAAYYNFASVSFLALGNVASKEVFKWAQSDPMLLKATGIIGRLFN

Q8SA63 Beta-caryophyllene synthase3.3e-1244.16Show/hide
Query:  MKRQCRAYMMETKWFYEGGVPIMEEYMKVATTSAAYYNFASVSFLALGNVASKEVFKWAQSDPMLLKATGIIGRLFN
        MK   R+YMME KW  EG VP  EE+M VA  S+ Y   A+  F+ +G++ + E FKWA + P ++KA+  I RL +
Subjt:  MKRQCRAYMMETKWFYEGGVPIMEEYMKVATTSAAYYNFASVSFLALGNVASKEVFKWAQSDPMLLKATGIIGRLFN

W0FFD7 (-)-drimenol synthase9.6e-1242.31Show/hide
Query:  MKRQCRAYMMETKWFYEGGVPIMEEYMKVATTSAAYYNFAS-VSFLALGNVASKEVFKWAQSDPMLLKATGIIGRLFN
        M + CR Y  E KW +E   P  +EY++ A+  +  YN  + V FL +G+VA+KE F+WA+ +P +++A GIIGRL +
Subjt:  MKRQCRAYMMETKWFYEGGVPIMEEYMKVATTSAAYYNFAS-VSFLALGNVASKEVFKWAQSDPMLLKATGIIGRLFN

Arabidopsis top hitse value%identityAlignment
AT1G31950.1 Terpenoid cyclases/Protein prenyltransferases superfamily protein1.1e-0733.33Show/hide
Query:  RAYMMETKWFYEGGVPIMEEYMKVATTSAAYYNFASVSFLALGNVASKEVFKWAQSDPMLLKATGIIGRLFN
        +AY    KW   G V   +EYMKV   +A   ++A+  F+ + ++  KE F+W  S+P+++K    + RL N
Subjt:  RAYMMETKWFYEGGVPIMEEYMKVATTSAAYYNFASVSFLALGNVASKEVFKWAQSDPMLLKATGIIGRLFN

AT3G14520.1 Terpenoid cyclases/Protein prenyltransferases superfamily protein4.6e-0934.21Show/hide
Query:  KRQCRAYMMETKWFYEGGVPIMEEYMKVATTSAAYYNFASVSFLALGNVASKEVFKWAQSDPMLLKATGIIGRLFN
        K   +A    T+W   G VP  +EYMKV   +A    +A   F+ + +V+ KE F+W  S+P++++A  ++ RL N
Subjt:  KRQCRAYMMETKWFYEGGVPIMEEYMKVATTSAAYYNFASVSFLALGNVASKEVFKWAQSDPMLLKATGIIGRLFN

AT3G14540.1 Terpenoid cyclases/Protein prenyltransferases superfamily protein1.2e-0934.72Show/hide
Query:  RAYMMETKWFYEGGVPIMEEYMKVATTSAAYYNFASVSFLALGNVASKEVFKWAQSDPMLLKATGIIGRLFN
        +AY   T+W  +G VP  +EYMKV   +A   ++A   F+ + ++  KE F+W  S+P+L+ A  ++ R+ N
Subjt:  RAYMMETKWFYEGGVPIMEEYMKVATTSAAYYNFASVSFLALGNVASKEVFKWAQSDPMLLKATGIIGRLFN

AT3G32030.1 Terpenoid cyclases/Protein prenyltransferases superfamily protein1.7e-0834.72Show/hide
Query:  RAYMMETKWFYEGGVPIMEEYMKVATTSAAYYNFASVSFLALGNVASKEVFKWAQSDPMLLKATGIIGRLFN
        RAY+  +KW  EG +P  +EYM+V   +    +FA  SF+A+ +   K +++W  S P +L+A  ++ R+ N
Subjt:  RAYMMETKWFYEGGVPIMEEYMKVATTSAAYYNFASVSFLALGNVASKEVFKWAQSDPMLLKATGIIGRLFN

AT4G20200.1 Terpenoid cyclases/Protein prenyltransferases superfamily protein1.5e-0734.21Show/hide
Query:  KRQCRAYMMETKWFYEGGVPIMEEYMKVATTSAAYYNFASVSFLALGNVASKEVFKWAQSDPMLLKATGIIGRLFN
        K   +A +   KW     +P  EEYM+V       Y   +  F+++G +A+KE F+W +S P L++   I GRL N
Subjt:  KRQCRAYMMETKWFYEGGVPIMEEYMKVATTSAAYYNFASVSFLALGNVASKEVFKWAQSDPMLLKATGIIGRLFN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAAGACAATGCAGAGCTTATATGATGGAAACTAAATGGTTCTATGAAGGGGGTGTTCCAATAATGGAAGAATACATGAAAGTTGCCACCACTTCTGCTGCGTACTA
TAATTTTGCTTCAGTTTCCTTCCTGGCCTTGGGGAATGTTGCTTCAAAAGAGGTTTTCAAATGGGCTCAAAGTGACCCTATGCTTCTTAAAGCAACTGGAATTATTGGCA
GGCTCTTCAATTGA
mRNA sequenceShow/hide mRNA sequence
ATGAAAAGACAATGCAGAGCTTATATGATGGAAACTAAATGGTTCTATGAAGGGGGTGTTCCAATAATGGAAGAATACATGAAAGTTGCCACCACTTCTGCTGCGTACTA
TAATTTTGCTTCAGTTTCCTTCCTGGCCTTGGGGAATGTTGCTTCAAAAGAGGTTTTCAAATGGGCTCAAAGTGACCCTATGCTTCTTAAAGCAACTGGAATTATTGGCA
GGCTCTTCAATTGA
Protein sequenceShow/hide protein sequence
MKRQCRAYMMETKWFYEGGVPIMEEYMKVATTSAAYYNFASVSFLALGNVASKEVFKWAQSDPMLLKATGIIGRLFN