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HG10003260 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10003260
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionF-box domain-containing protein
Genome locationChr11:19437340..19438230
RNA-Seq ExpressionHG10003260
SyntenyHG10003260
Gene Ontology termsGO:0003700 - DNA-binding transcription factor activity (molecular function)
GO:0005515 - protein binding (molecular function)
InterPro domainsIPR001810 - F-box domain
IPR013087 - Zinc finger C2H2-type
IPR036047 - F-box-like domain superfamily
IPR036236 - Zinc finger C2H2 superfamily
IPR044653 - C2H2-type zinc-finger protein AZF1/2/3-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KGN55978.1 hypothetical protein Csa_010625 [Cucumis sativus]8.4e-1244.12Show/hide
Query:  IREGSVAVTTSSSSSTS----EAEPRSRFALIDRMDQRKENNVSSLPMKKMKNGWDDSVIGENEIHELKEVKKLYKCNRCGKGFWSHQALGGHKSSHYKP
        I   +VA  +SSSS +S    EA+  SRF+  D ++ +++       +KKMK           +I+E+ E+ K+YKCN C K + SHQALGGHKS H K 
Subjt:  IREGSVAVTTSSSSSTS----EAEPRSRFALIDRMDQRKENNVSSLPMKKMKNGWDDSVIGENEIHELKEVKKLYKCNRCGKGFWSHQALGGHKSSHYKP

Query:  KFQLLVSPILTH-IPQERRIPNFDLNELPPNEDDYN
        K  L  S  +T+   QER+I NFDLNELP  EDD N
Subjt:  KFQLLVSPILTH-IPQERRIPNFDLNELPPNEDDYN

KMZ73225.1 hypothetical protein ZOSMA_150G00280 [Zostera marina]2.6e-0563.41Show/hide
Query:  DSSFMDLPENCISCILAFTSPKDACKLATVSQSFRSAVDCD
        D  F  LPENCI+CIL+FTSP+D C+LAT+S  FRSA + D
Subjt:  DSSFMDLPENCISCILAFTSPKDACKLATVSQSFRSAVDCD

XP_006346239.1 PREDICTED: zinc finger protein ZAT2 [Solanum tuberosum]1.5e-0532.33Show/hide
Query:  TTSSSSSTSEAEPRSRFALIDRMDQRKENNVSSLPMKKMKNGWDDSVIGENEIHELKEVKKLYKCNRCGKGFWSHQALGGHKSSHYKPKFQLLVSPILTH
        T S+ S TS+AE     A ++ +D RK        ++ + +      + ++         + +KCN CGK F +HQALGGHKSSH K +  +  S +   
Subjt:  TTSSSSSTSEAEPRSRFALIDRMDQRKENNVSSLPMKKMKNGWDDSVIGENEIHELKEVKKLYKCNRCGKGFWSHQALGGHKSSHYKPKFQLLVSPILTH

Query:  IPQER------------RIPNFDLNELPPNEDD
        I +E             RI +FDLNELP + +D
Subjt:  IPQER------------RIPNFDLNELPPNEDD

XP_008449183.1 PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103491133 [Cucumis melo]1.3e-1242.55Show/hide
Query:  EGSVAVTTSSSSSTSEAEPRSRFALIDRMDQRKENNVSSLPMKKMKNGWDDSVIGENEIHELKEVKKLYKCNRCGKGFWSHQALGGHKSSHYKPKFQLLV
        +G   VT + SSS+S +      A ++ +    +       +KKMK           +I+E+ E+KK+YKCN C K + SHQALGGHKS H K K  L  
Subjt:  EGSVAVTTSSSSSTSEAEPRSRFALIDRMDQRKENNVSSLPMKKMKNGWDDSVIGENEIHELKEVKKLYKCNRCGKGFWSHQALGGHKSSHYKPKFQLLV

Query:  SP-ILTHIPQERRIPNFDLNELPPNEDDYNDNDNGEAKASI
        S  + T   QER+I NFDLNELP  E D    DN E KASI
Subjt:  SP-ILTHIPQERRIPNFDLNELPPNEDDYNDNDNGEAKASI

XP_022143488.1 zinc finger protein ZAT3-like [Momordica charantia]1.0e-0937.19Show/hide
Query:  TSSSSSTSEAEPRSRFALIDRMDQRKENNVSSLPMKKMKNGWDDSVIGENEIHELKEVKK--LYKCNRCGKGFWSHQALGGHKSSHYKPKFQLLVSPILT
        +SSSSS + + P   +++  R  +++ ++ ++            S    N+ H+    KK  +Y+CN CGK FWS QALGGHKSSHYKP+       ++ 
Subjt:  TSSSSSTSEAEPRSRFALIDRMDQRKENNVSSLPMKKMKNGWDDSVIGENEIHELKEVKK--LYKCNRCGKGFWSHQALGGHKSSHYKPKFQLLVSPILT

Query:  HIPQERRIPNFDLNELPPNED
             RR  +FDLNELPP +D
Subjt:  HIPQERRIPNFDLNELPPNED

TrEMBL top hitse value%identityAlignment
A0A0A0L2N1 Uncharacterized protein4.1e-1244.12Show/hide
Query:  IREGSVAVTTSSSSSTS----EAEPRSRFALIDRMDQRKENNVSSLPMKKMKNGWDDSVIGENEIHELKEVKKLYKCNRCGKGFWSHQALGGHKSSHYKP
        I   +VA  +SSSS +S    EA+  SRF+  D ++ +++       +KKMK           +I+E+ E+ K+YKCN C K + SHQALGGHKS H K 
Subjt:  IREGSVAVTTSSSSSTS----EAEPRSRFALIDRMDQRKENNVSSLPMKKMKNGWDDSVIGENEIHELKEVKKLYKCNRCGKGFWSHQALGGHKSSHYKP

Query:  KFQLLVSPILTH-IPQERRIPNFDLNELPPNEDDYN
        K  L  S  +T+   QER+I NFDLNELP  EDD N
Subjt:  KFQLLVSPILTH-IPQERRIPNFDLNELPPNEDDYN

A0A0K9PYD2 F-box domain-containing protein1.3e-0563.41Show/hide
Query:  DSSFMDLPENCISCILAFTSPKDACKLATVSQSFRSAVDCD
        D  F  LPENCI+CIL+FTSP+D C+LAT+S  FRSA + D
Subjt:  DSSFMDLPENCISCILAFTSPKDACKLATVSQSFRSAVDCD

A0A1S3BLH2 LOW QUALITY PROTEIN: uncharacterized protein LOC1034911336.3e-1342.55Show/hide
Query:  EGSVAVTTSSSSSTSEAEPRSRFALIDRMDQRKENNVSSLPMKKMKNGWDDSVIGENEIHELKEVKKLYKCNRCGKGFWSHQALGGHKSSHYKPKFQLLV
        +G   VT + SSS+S +      A ++ +    +       +KKMK           +I+E+ E+KK+YKCN C K + SHQALGGHKS H K K  L  
Subjt:  EGSVAVTTSSSSSTSEAEPRSRFALIDRMDQRKENNVSSLPMKKMKNGWDDSVIGENEIHELKEVKKLYKCNRCGKGFWSHQALGGHKSSHYKPKFQLLV

Query:  SP-ILTHIPQERRIPNFDLNELPPNEDDYNDNDNGEAKASI
        S  + T   QER+I NFDLNELP  E D    DN E KASI
Subjt:  SP-ILTHIPQERRIPNFDLNELPPNEDDYNDNDNGEAKASI

A0A6J1CQU4 zinc finger protein ZAT3-like5.0e-1037.19Show/hide
Query:  TSSSSSTSEAEPRSRFALIDRMDQRKENNVSSLPMKKMKNGWDDSVIGENEIHELKEVKK--LYKCNRCGKGFWSHQALGGHKSSHYKPKFQLLVSPILT
        +SSSSS + + P   +++  R  +++ ++ ++            S    N+ H+    KK  +Y+CN CGK FWS QALGGHKSSHYKP+       ++ 
Subjt:  TSSSSSTSEAEPRSRFALIDRMDQRKENNVSSLPMKKMKNGWDDSVIGENEIHELKEVKK--LYKCNRCGKGFWSHQALGGHKSSHYKPKFQLLVSPILT

Query:  HIPQERRIPNFDLNELPPNED
             RR  +FDLNELPP +D
Subjt:  HIPQERRIPNFDLNELPPNED

M1C052 Tapetum-specific zinc finger protein 17.4e-0632.33Show/hide
Query:  TTSSSSSTSEAEPRSRFALIDRMDQRKENNVSSLPMKKMKNGWDDSVIGENEIHELKEVKKLYKCNRCGKGFWSHQALGGHKSSHYKPKFQLLVSPILTH
        T S+ S TS+AE     A ++ +D RK        ++ + +      + ++         + +KCN CGK F +HQALGGHKSSH K +  +  S +   
Subjt:  TTSSSSSTSEAEPRSRFALIDRMDQRKENNVSSLPMKKMKNGWDDSVIGENEIHELKEVKKLYKCNRCGKGFWSHQALGGHKSSHYKPKFQLLVSPILTH

Query:  IPQER------------RIPNFDLNELPPNEDD
        I +E             RI +FDLNELP + +D
Subjt:  IPQER------------RIPNFDLNELPPNEDD

SwissProt top hitse value%identityAlignment
Q3E6P4 F-box protein At2g022401.6e-0551.85Show/hide
Query:  EEIDQRDSSFMDLPENCISCILAFTSPKDACKLATVSQSFRSAV--DCDYDFIL
        E +    S F  LPE+CIS I++FTSP+DAC  A+VS++F SAV  DC +D  L
Subjt:  EEIDQRDSSFMDLPENCISCILAFTSPKDACKLATVSQSFRSAV--DCDYDFIL

Q570N1 F-box protein PP2-B31.4e-0658.7Show/hide
Query:  EIDQRDSSFMDLPENCISCILAFTSPKDACKLATVSQSFRSAVDCD
        EI  R S F  LPENCIS I++FT+P+DAC  A+VS++F SAV  D
Subjt:  EIDQRDSSFMDLPENCISCILAFTSPKDACKLATVSQSFRSAVDCD

Q9ZVQ9 F-box protein PP2-B71.2e-0561.54Show/hide
Query:  SFMDLPENCISCILAFTSPKDACKLATVSQSFRSAVDCD
        S  DLPE CIS I++FTSP+DAC  A VS++F SAV  D
Subjt:  SFMDLPENCISCILAFTSPKDACKLATVSQSFRSAVDCD

Q9ZVR0 Putative F-box protein PP2-B61.1e-0658.7Show/hide
Query:  EIDQRDSSFMDLPENCISCILAFTSPKDACKLATVSQSFRSAVDCD
        EI    S F DLPE+CIS I++FTSP+D C  A+VS+SF  AV CD
Subjt:  EIDQRDSSFMDLPENCISCILAFTSPKDACKLATVSQSFRSAVDCD

Q9ZVR5 Putative F-box protein PP2-B21.2e-0560Show/hide
Query:  SSFMDLPENCISCILAFTSPKDACKLATVSQSFRSAVDCD
        S F +LPE+CIS I++FTSP+DAC  A+VS++F SAV+ D
Subjt:  SSFMDLPENCISCILAFTSPKDACKLATVSQSFRSAVDCD

Arabidopsis top hitse value%identityAlignment
AT2G02240.1 F-box family protein1.1e-0651.85Show/hide
Query:  EEIDQRDSSFMDLPENCISCILAFTSPKDACKLATVSQSFRSAV--DCDYDFIL
        E +    S F  LPE+CIS I++FTSP+DAC  A+VS++F SAV  DC +D  L
Subjt:  EEIDQRDSSFMDLPENCISCILAFTSPKDACKLATVSQSFRSAV--DCDYDFIL

AT2G02250.1 phloem protein 2-B28.6e-0760Show/hide
Query:  SSFMDLPENCISCILAFTSPKDACKLATVSQSFRSAVDCD
        S F +LPE+CIS I++FTSP+DAC  A+VS++F SAV+ D
Subjt:  SSFMDLPENCISCILAFTSPKDACKLATVSQSFRSAVDCD

AT2G02310.1 phloem protein 2-B67.8e-0858.7Show/hide
Query:  EIDQRDSSFMDLPENCISCILAFTSPKDACKLATVSQSFRSAVDCD
        EI    S F DLPE+CIS I++FTSP+D C  A+VS+SF  AV CD
Subjt:  EIDQRDSSFMDLPENCISCILAFTSPKDACKLATVSQSFRSAVDCD

AT2G02320.1 phloem protein 2-B78.6e-0761.54Show/hide
Query:  SFMDLPENCISCILAFTSPKDACKLATVSQSFRSAVDCD
        S  DLPE CIS I++FTSP+DAC  A VS++F SAV  D
Subjt:  SFMDLPENCISCILAFTSPKDACKLATVSQSFRSAVDCD

AT2G02340.1 phloem protein 2-B81.1e-0663.89Show/hide
Query:  DLPENCISCILAFTSPKDACKLATVSQSFRSAVDCD
        DLPE C+S I++FTSP+DAC LA+VS++F SAV  D
Subjt:  DLPENCISCILAFTSPKDACKLATVSQSFRSAVDCD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAGAAGAAATTGATCAGAGAGATTCATCCTTTATGGACTTGCCGGAAAATTGCATTAGCTGCATTTTGGCTTTCACGTCTCCCAAGGACGCCTGCAAACTAGCTAC
TGTCTCTCAAAGCTTTCGATCGGCTGTAGATTGCGATTATGATTTTATTTTAGTACAACAAATAAGAGAGGGCTCTGTAGCTGTTACTACCTCCTCCTCTTCTTCAACTT
CTGAAGCTGAACCCAGATCTCGTTTTGCCCTAATCGATAGGATGGATCAACGAAAAGAGAATAATGTGAGTAGTCTTCCAATGAAGAAAATGAAGAATGGTTGGGATGAT
TCCGTAATAGGTGAAAATGAAATCCATGAGCTGAAAGAGGTGAAGAAATTATATAAATGCAATAGGTGTGGAAAAGGGTTTTGGTCTCACCAAGCATTGGGAGGCCATAA
ATCTAGCCACTACAAACCCAAATTTCAGTTATTAGTTTCCCCAATTTTGACACACATTCCTCAAGAGAGGAGGATCCCTAATTTTGATCTCAATGAGCTCCCACCGAACG
AAGACGACTATAACGACAACGACAACGGAGAAGCTAAAGCAAGCATAGCTTATCAGGTCAGATAA
mRNA sequenceShow/hide mRNA sequence
ATGAAAGAAGAAATTGATCAGAGAGATTCATCCTTTATGGACTTGCCGGAAAATTGCATTAGCTGCATTTTGGCTTTCACGTCTCCCAAGGACGCCTGCAAACTAGCTAC
TGTCTCTCAAAGCTTTCGATCGGCTGTAGATTGCGATTATGATTTTATTTTAGTACAACAAATAAGAGAGGGCTCTGTAGCTGTTACTACCTCCTCCTCTTCTTCAACTT
CTGAAGCTGAACCCAGATCTCGTTTTGCCCTAATCGATAGGATGGATCAACGAAAAGAGAATAATGTGAGTAGTCTTCCAATGAAGAAAATGAAGAATGGTTGGGATGAT
TCCGTAATAGGTGAAAATGAAATCCATGAGCTGAAAGAGGTGAAGAAATTATATAAATGCAATAGGTGTGGAAAAGGGTTTTGGTCTCACCAAGCATTGGGAGGCCATAA
ATCTAGCCACTACAAACCCAAATTTCAGTTATTAGTTTCCCCAATTTTGACACACATTCCTCAAGAGAGGAGGATCCCTAATTTTGATCTCAATGAGCTCCCACCGAACG
AAGACGACTATAACGACAACGACAACGGAGAAGCTAAAGCAAGCATAGCTTATCAGGTCAGATAA
Protein sequenceShow/hide protein sequence
MKEEIDQRDSSFMDLPENCISCILAFTSPKDACKLATVSQSFRSAVDCDYDFILVQQIREGSVAVTTSSSSSTSEAEPRSRFALIDRMDQRKENNVSSLPMKKMKNGWDD
SVIGENEIHELKEVKKLYKCNRCGKGFWSHQALGGHKSSHYKPKFQLLVSPILTHIPQERRIPNFDLNELPPNEDDYNDNDNGEAKASIAYQVR