; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10003345 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10003345
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionC2H2-like zinc finger protein
Genome locationChr11:20508400..20508888
RNA-Seq ExpressionHG10003345
SyntenyHG10003345
Gene Ontology termsNA
InterPro domainsIPR013087 - Zinc finger C2H2-type
IPR036236 - Zinc finger C2H2 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6581122.1 Zinc finger protein KNUCKLES, partial [Cucurbita argyrosperma subsp. sororia]2.8e-5872.22Show/hide
Query:  MADPAIYDFLSQTTTPSNSSSKASRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKAFTSEILHLGSLQHSPPPPTMTPPPHHHHLLP
        MADPAIYDFL+QTTT SNS+ KASRK QSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKAF SEILHLGSL   PPPPT T    HHHL  
Subjt:  MADPAIYDFLSQTTTPSNSSSKASRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKAFTSEILHLGSLQHSPPPPTMTPPPHHHHLLP

Query:  RYAPAPAPTP-------QTPGAFLDDHWFHQNHLCANTTT-----------PSASSSPDALSPNTDAAVEHVTIDLTLRL
         Y  APAPTP         P  FL  HWF+QNH  ANTTT            SAS+SPDALSPN D AVEHVTIDLTLRL
Subjt:  RYAPAPAPTP-------QTPGAFLDDHWFHQNHLCANTTT-----------PSASSSPDALSPNTDAAVEHVTIDLTLRL

KAG7017856.1 Zinc finger protein KNUCKLES, partial [Cucurbita argyrosperma subsp. argyrosperma]6.1e-5873.71Show/hide
Query:  MADPAIYDFLSQTTTPSNSSSKASRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKAFTSEILHLGSLQHSPPPPTMTPPPHHHHLLP
        MADPAIYDFL+QTTT SNS+ KASRK QSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKAF SEILHLGSL   PPP T T    HHHL  
Subjt:  MADPAIYDFLSQTTTPSNSSSKASRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKAFTSEILHLGSLQHSPPPPTMTPPPHHHHLLP

Query:  RYAPAPAPTP-------QTPGAFLDDHWFHQNHLCANTTT------PSASSSPDALSPNTDAAVEHVTIDLTLRL
         Y  APAPTP         P  FL  HWF+QNH  ANTTT       SAS+SPDALSPN D AVEHVTIDLTLRL
Subjt:  RYAPAPAPTP-------QTPGAFLDDHWFHQNHLCANTTT------PSASSSPDALSPNTDAAVEHVTIDLTLRL

XP_022934585.1 protein LATE FLOWERING-like [Cucurbita moschata]2.3e-5776.19Show/hide
Query:  MADPAIYDFLSQTTTPSNSSSKASRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKAFTSEILHLGSLQHSPPPPTMTPPPHHHHLLP
        MADPAIYDFL+QTTT SNS+ KASRK QSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKAF SEILHLGSL   PPPP  T    HHHL  
Subjt:  MADPAIYDFLSQTTTPSNSSSKASRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKAFTSEILHLGSLQHSPPPPTMTPPPHHHHLLP

Query:  RYAPAPAPTP---QTPGAFLDDHWFHQNHLCANTTT---PSASSSPDALSPNTDAAVEHVTIDLTLRL
         Y  AP+PTP     P  FL  HWF+QNH  ANTTT    SAS+SPDALSPN D AVEHVTIDLTLRL
Subjt:  RYAPAPAPTP---QTPGAFLDDHWFHQNHLCANTTT---PSASSSPDALSPNTDAAVEHVTIDLTLRL

XP_022983390.1 protein LATE FLOWERING-like [Cucurbita maxima]1.4e-5777.11Show/hide
Query:  MADPAIYDFLSQTTTPSNSSSKASRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKAFTSEILHLGSLQHSPPPPTMTPPPHHHHLLP
        MADPAIYDFL+QTTT SNS+ KASRK QSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKAF SEILHLGSL   P   TMT    HHHL  
Subjt:  MADPAIYDFLSQTTTPSNSSSKASRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKAFTSEILHLGSLQHSPPPPTMTPPPHHHHLLP

Query:  RYAPAPAPTP-QTPGAFLDDHWFHQNHLCAN---TTTPSASSSPDALSPNTDAAVEHVTIDLTLRL
         Y  APAPTP   P  FL  HWF+QNH  AN   TTT SAS+SPDALSPN D AVEHVTIDLTLRL
Subjt:  RYAPAPAPTP-QTPGAFLDDHWFHQNHLCAN---TTTPSASSSPDALSPNTDAAVEHVTIDLTLRL

XP_023529006.1 protein LATE FLOWERING-like [Cucurbita pepo subsp. pepo]8.0e-5874.14Show/hide
Query:  MADPAIYDFLSQTTTPSNSSSKASRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKAFTSEILHLGSLQHSPPPPTMTPPPHHHHLLP
        MADPAIYDFL+QTTT SNS++KASRK QSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKAF SEILHLGSL   PPPPT      HHHL  
Subjt:  MADPAIYDFLSQTTTPSNSSSKASRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKAFTSEILHLGSLQHSPPPPTMTPPPHHHHLLP

Query:  RY----APAPAPTPQT---PGAFLDDHWFHQNHLCAN-----TTTPSASSSPDALSPNTDAAVEHVTIDLTLRL
         Y    AP P PTP T   P  FL  HWF+QNH  AN     TTT +AS+SPDALSPN D AVEHVTIDLTLRL
Subjt:  RY----APAPAPTPQT---PGAFLDDHWFHQNHLCAN-----TTTPSASSSPDALSPNTDAAVEHVTIDLTLRL

TrEMBL top hitse value%identityAlignment
A0A0A0LDF1 C2H2-type domain-containing protein7.4e-4163.64Show/hide
Query:  MADPAIYDFLSQTTT--PSNSSSKASR--KSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRER-AASRKA---FTSEILHLG--SLQHSPPPPTMT
        MADP IYDFLSQTTT  PSN+S+   +   S+  +S SRIFPCLYCPRKFYTSQALGGHQNAHKRER AASRKA    T+EILHLG  SLQHSPPPP  T
Subjt:  MADPAIYDFLSQTTT--PSNSSSKASR--KSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRER-AASRKA---FTSEILHLG--SLQHSPPPPTMT

Query:  P-PPHHHHLLPRYAPAPAPTPQTPGAFLDDHW-FHQNHLCANTTTPSASSSPDALSP--NTDAAVEHVTIDLTLRL
            HHHHL P + P P     TP +FLD H  FH N+ C NT     S+SPD LSP  +TD A+EH+ IDLTLRL
Subjt:  P-PPHHHHLLPRYAPAPAPTPQTPGAFLDDHW-FHQNHLCANTTTPSASSSPDALSP--NTDAAVEHVTIDLTLRL

A0A6J1EJQ6 protein LATE FLOWERING-like2.9e-5373.46Show/hide
Query:  MADPAIYDFLSQTTTPSNSSSKASRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKAFTSEILHLGSLQHSPPPPTMTPPPHHHHLLP
        MADPAIYDFLSQTT  ++     SRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKAFTSEILHLGSLQHS PPP   PP  +HHL  
Subjt:  MADPAIYDFLSQTTTPSNSSSKASRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKAFTSEILHLGSLQHSPPPPTMTPPPHHHHLLP

Query:  RYAPAPAPTPQTPGAFLDDHWFHQNHLCANTTTPSASSSPDALSPNTDAAVEHVTIDLTLRL
            +P+ T   P A  D+HWFHQN+    TTT +AS+SP+ LSPN DAAVEHVTIDLTLRL
Subjt:  RYAPAPAPTPQTPGAFLDDHWFHQNHLCANTTTPSASSSPDALSPNTDAAVEHVTIDLTLRL

A0A6J1F843 protein LATE FLOWERING-like1.1e-5776.19Show/hide
Query:  MADPAIYDFLSQTTTPSNSSSKASRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKAFTSEILHLGSLQHSPPPPTMTPPPHHHHLLP
        MADPAIYDFL+QTTT SNS+ KASRK QSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKAF SEILHLGSL   PPPP  T    HHHL  
Subjt:  MADPAIYDFLSQTTTPSNSSSKASRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKAFTSEILHLGSLQHSPPPPTMTPPPHHHHLLP

Query:  RYAPAPAPTP---QTPGAFLDDHWFHQNHLCANTTT---PSASSSPDALSPNTDAAVEHVTIDLTLRL
         Y  AP+PTP     P  FL  HWF+QNH  ANTTT    SAS+SPDALSPN D AVEHVTIDLTLRL
Subjt:  RYAPAPAPTP---QTPGAFLDDHWFHQNHLCANTTT---PSASSSPDALSPNTDAAVEHVTIDLTLRL

A0A6J1J5R2 protein LATE FLOWERING-like6.6e-5877.11Show/hide
Query:  MADPAIYDFLSQTTTPSNSSSKASRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKAFTSEILHLGSLQHSPPPPTMTPPPHHHHLLP
        MADPAIYDFL+QTTT SNS+ KASRK QSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKAF SEILHLGSL   P   TMT    HHHL  
Subjt:  MADPAIYDFLSQTTTPSNSSSKASRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKAFTSEILHLGSLQHSPPPPTMTPPPHHHHLLP

Query:  RYAPAPAPTP-QTPGAFLDDHWFHQNHLCAN---TTTPSASSSPDALSPNTDAAVEHVTIDLTLRL
         Y  APAPTP   P  FL  HWF+QNH  AN   TTT SAS+SPDALSPN D AVEHVTIDLTLRL
Subjt:  RYAPAPAPTP-QTPGAFLDDHWFHQNHLCAN---TTTPSASSSPDALSPNTDAAVEHVTIDLTLRL

A0A6J1JQI7 protein LATE FLOWERING-like4.4e-5473.62Show/hide
Query:  MADPAIYDFLSQTTTPSNSSSKASRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKAFTSEILHLGSLQHSPPPPTMTPPPHHHHLLP
        MADPAIYDFLSQTT  ++     SRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRK FTSEILHLGSLQHS PPP   PP  +HHL  
Subjt:  MADPAIYDFLSQTTTPSNSSSKASRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKAFTSEILHLGSLQHSPPPPTMTPPPHHHHLLP

Query:  RYAPAPAPTPQTPGAFLDDHWFHQ-NHLCANTTTPSASSSPDALSPNTDAAVEHVTIDLTLRL
            +P+ T   P A  D+HWFHQ NH    TTT SAS+SP+ LSPN DAAVEHVTIDLTLRL
Subjt:  RYAPAPAPTPQTPGAFLDDHWFHQ-NHLCANTTTPSASSSPDALSPNTDAAVEHVTIDLTLRL

SwissProt top hitse value%identityAlignment
Q39261 Zinc finger protein 27.1e-0957.69Show/hide
Query:  NSSSKASRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKA
        +SSS +S  S S     R+F C YC RKFY+SQALGGHQNAHK ER  ++K+
Subjt:  NSSSKASRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKA

Q39263 Zinc finger protein 41.1e-0953.97Show/hide
Query:  SQTTTPSNSSSKASRKSQSQYS----SSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKA
        S  T P +S+S++S   Q Q      S R+F C YC RKFY+SQALGGHQNAHKRER  +++A
Subjt:  SQTTTPSNSSSKASRKSQSQYS----SSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKA

Q42485 Zinc finger protein 14.2e-0955.77Show/hide
Query:  SNSSSKASRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRK
        S+SS+   +  Q Q +  R+F C YC RKFY+SQALGGHQNAHKRER  +++
Subjt:  SNSSSKASRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRK

Q9FFX4 Zinc finger protein KNUCKLES9.6e-1454.88Show/hide
Query:  PAIYDFLSQTTTPSNSSSKASRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKAFTSEILHLGSLQHSPP
        P+   F+    T S SS + S  S +  +S R+FPC YCPRKFYTSQALGGHQNAHKRERAA+R+       +LG L +SPP
Subjt:  PAIYDFLSQTTTPSNSSSKASRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKAFTSEILHLGSLQHSPP

Q9FKA9 Protein LATE FLOWERING2.6e-1147.5Show/hide
Query:  SKASRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKAFTS-EILHLGSLQHSPPPPTMTPPPHHHHLL
        SK + K+    SS RIFPCL+C RKF++SQALGGHQNAHK+ER A+R+A  + + ++     H+ P    +P  HH  +L
Subjt:  SKASRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKAFTS-EILHLGSLQHSPPPPTMTPPPHHHHLL

Arabidopsis top hitse value%identityAlignment
AT1G66140.1 zinc finger protein 47.8e-1153.97Show/hide
Query:  SQTTTPSNSSSKASRKSQSQYS----SSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKA
        S  T P +S+S++S   Q Q      S R+F C YC RKFY+SQALGGHQNAHKRER  +++A
Subjt:  SQTTTPSNSSSKASRKSQSQYS----SSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKA

AT1G80730.1 zinc-finger protein 13.0e-1055.77Show/hide
Query:  SNSSSKASRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRK
        S+SS+   +  Q Q +  R+F C YC RKFY+SQALGGHQNAHKRER  +++
Subjt:  SNSSSKASRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRK

AT5G14010.1 C2H2 and C2HC zinc fingers superfamily protein6.8e-1554.88Show/hide
Query:  PAIYDFLSQTTTPSNSSSKASRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKAFTSEILHLGSLQHSPP
        P+   F+    T S SS + S  S +  +S R+FPC YCPRKFYTSQALGGHQNAHKRERAA+R+       +LG L +SPP
Subjt:  PAIYDFLSQTTTPSNSSSKASRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKAFTSEILHLGSLQHSPP

AT5G48890.1 C2H2-like zinc finger protein1.9e-1247.5Show/hide
Query:  SKASRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKAFTS-EILHLGSLQHSPPPPTMTPPPHHHHLL
        SK + K+    SS RIFPCL+C RKF++SQALGGHQNAHK+ER A+R+A  + + ++     H+ P    +P  HH  +L
Subjt:  SKASRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKAFTS-EILHLGSLQHSPPPPTMTPPPHHHHLL

AT5G57520.1 zinc finger protein 25.1e-1057.69Show/hide
Query:  NSSSKASRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKA
        +SSS +S  S S     R+F C YC RKFY+SQALGGHQNAHK ER  ++K+
Subjt:  NSSSKASRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGACCCAGCTATTTACGACTTCCTTAGCCAAACAACCACTCCTTCTAATTCTTCATCCAAAGCTTCAAGAAAATCTCAGTCTCAATACTCTTCCTCTCGCATTTT
TCCATGTCTTTACTGCCCTCGCAAATTTTACACTTCTCAAGCCCTAGGCGGCCACCAAAATGCTCACAAGAGAGAAAGAGCCGCTTCTCGTAAGGCTTTCACCTCTGAAA
TTCTTCACCTCGGTTCGCTTCAACACTCGCCGCCACCGCCGACCATGACTCCTCCTCCTCATCATCATCATCTTCTGCCGCGCTACGCGCCAGCTCCGGCTCCGACTCCT
CAGACTCCAGGTGCTTTTCTCGATGACCATTGGTTTCATCAGAATCATCTCTGTGCTAACACCACCACCCCCTCTGCCTCCTCCTCGCCGGATGCTCTCTCTCCGAACAC
CGATGCCGCCGTTGAACATGTAACCATCGATCTCACTCTTCGCTTATGA
mRNA sequenceShow/hide mRNA sequence
ATGGCGGACCCAGCTATTTACGACTTCCTTAGCCAAACAACCACTCCTTCTAATTCTTCATCCAAAGCTTCAAGAAAATCTCAGTCTCAATACTCTTCCTCTCGCATTTT
TCCATGTCTTTACTGCCCTCGCAAATTTTACACTTCTCAAGCCCTAGGCGGCCACCAAAATGCTCACAAGAGAGAAAGAGCCGCTTCTCGTAAGGCTTTCACCTCTGAAA
TTCTTCACCTCGGTTCGCTTCAACACTCGCCGCCACCGCCGACCATGACTCCTCCTCCTCATCATCATCATCTTCTGCCGCGCTACGCGCCAGCTCCGGCTCCGACTCCT
CAGACTCCAGGTGCTTTTCTCGATGACCATTGGTTTCATCAGAATCATCTCTGTGCTAACACCACCACCCCCTCTGCCTCCTCCTCGCCGGATGCTCTCTCTCCGAACAC
CGATGCCGCCGTTGAACATGTAACCATCGATCTCACTCTTCGCTTATGA
Protein sequenceShow/hide protein sequence
MADPAIYDFLSQTTTPSNSSSKASRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKAFTSEILHLGSLQHSPPPPTMTPPPHHHHLLPRYAPAPAPTP
QTPGAFLDDHWFHQNHLCANTTTPSASSSPDALSPNTDAAVEHVTIDLTLRL