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HG10003353 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10003353
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description(-)-germacrene D synthase-like
Genome locationChr11:20815654..20815827
RNA-Seq ExpressionHG10003353
SyntenyHG10003353
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0016102 - diterpenoid biosynthetic process (biological process)
GO:0005634 - nucleus (cellular component)
GO:0000287 - magnesium ion binding (molecular function)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
GO:0010333 - terpene synthase activity (molecular function)
GO:0043565 - sequence-specific DNA binding (molecular function)
InterPro domainsIPR001906 - Terpene synthase, N-terminal domain
IPR008930 - Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid
IPR036965 - Terpene synthase, N-terminal domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8650087.1 hypothetical protein Csa_010373 [Cucumis sativus]3.1e-1284.09Show/hide
Query:  MSYHFDDEINEVLKLMQNPCNVDEEDEDLYITALRFRVLRQQSF
        +SYHFDDEINEVL LM+NPCNVD+E EDLYITALRFR+LRQQ F
Subjt:  MSYHFDDEINEVLKLMQNPCNVDEEDEDLYITALRFRVLRQQSF

KGN55986.2 hypothetical protein Csa_011696 [Cucumis sativus]4.1e-0971.74Show/hide
Query:  YHFDDEINEVLKLMQNPCNVDEEDEDLYITALRFRVLRQQSFFVSC
        Y+F+DEINEVL LM N  N+DEED DLY  ALRFR+LRQ+ FFVSC
Subjt:  YHFDDEINEVLKLMQNPCNVDEEDEDLYITALRFRVLRQQSFFVSC

XP_008448975.1 PREDICTED: (-)-germacrene D synthase-like [Cucumis melo]1.6e-1381.63Show/hide
Query:  MSYHFDDEINEVLK-LMQNPCNVDEEDEDLYITALRFRVLRQQSFFVSC
        +SYHFDDEINEVL  LMQNPCN+DEE EDLYITALRFR+LRQQ  F+SC
Subjt:  MSYHFDDEINEVLK-LMQNPCNVDEEDEDLYITALRFRVLRQQSFFVSC

XP_031738277.1 (-)-germacrene D synthase isoform X2 [Cucumis sativus]5.0e-1585.42Show/hide
Query:  MSYHFDDEINEVLKLMQNPCNVDEEDEDLYITALRFRVLRQQSFFVSC
        +SYHFDDEINEVL LM+NPCNVD+E EDLYITALRFR+LRQQ FFVSC
Subjt:  MSYHFDDEINEVLKLMQNPCNVDEEDEDLYITALRFRVLRQQSFFVSC

XP_038877743.1 LOW QUALITY PROTEIN: (-)-germacrene D synthase-like [Benincasa hispida]4.0e-1277.08Show/hide
Query:  MSYHFDDEINEVLKLMQNPCNVDEEDEDLYITALRFRVLRQQSFFVSC
        +SYHF DE +EV+  +QNP NVDEEDEDLYITALRFR+LRQQ FFVSC
Subjt:  MSYHFDDEINEVLKLMQNPCNVDEEDEDLYITALRFRVLRQQSFFVSC

TrEMBL top hitse value%identityAlignment
A0A0A0L2M0 Uncharacterized protein2.0e-0971.74Show/hide
Query:  YHFDDEINEVLKLMQNPCNVDEEDEDLYITALRFRVLRQQSFFVSC
        Y+F+DEINEVL LM N  N+DEED DLY  ALRFR+LRQ+ FFVSC
Subjt:  YHFDDEINEVLKLMQNPCNVDEEDEDLYITALRFRVLRQQSFFVSC

A0A0A0L782 Uncharacterized protein2.4e-1585.42Show/hide
Query:  MSYHFDDEINEVLKLMQNPCNVDEEDEDLYITALRFRVLRQQSFFVSC
        +SYHFDDEINEVL LM+NPCNVD+E EDLYITALRFR+LRQQ FFVSC
Subjt:  MSYHFDDEINEVLKLMQNPCNVDEEDEDLYITALRFRVLRQQSFFVSC

A0A0A0LN25 Uncharacterized protein2.0e-0967.35Show/hide
Query:  MSYHFDDEINEVLKLMQNPCNVDEED-EDLYITALRFRVLRQQSFFVSC
        +SYHF+DEIN++L  +QN  +VDEED EDLYI AL+FR+LRQ+ FFVSC
Subjt:  MSYHFDDEINEVLKLMQNPCNVDEED-EDLYITALRFRVLRQQSFFVSC

A0A1S3BLW6 (-)-germacrene D synthase-like7.8e-1481.63Show/hide
Query:  MSYHFDDEINEVLK-LMQNPCNVDEEDEDLYITALRFRVLRQQSFFVSC
        +SYHFDDEINEVL  LMQNPCN+DEE EDLYITALRFR+LRQQ  F+SC
Subjt:  MSYHFDDEINEVLK-LMQNPCNVDEEDEDLYITALRFRVLRQQSFFVSC

A0A5D3BQ16 Putative terpene synthase 2 isoform X14.5e-0969.39Show/hide
Query:  MSYHFDDEINEVLKLMQNPCNVDEED-EDLYITALRFRVLRQQSFFVSC
        +SYHF+DEINE+L  +QN  +VDEED EDLYI AL+FR+LRQQ F VSC
Subjt:  MSYHFDDEINEVLKLMQNPCNVDEED-EDLYITALRFRVLRQQSFFVSC

SwissProt top hitse value%identityAlignment
B9SBV6 Probable terpene synthase 38.4e-0553.19Show/hide
Query:  MSYHFDDEINEVLKLMQNPCNVDEEDEDLYITALRFRVLRQQSFFVS
        ++YHF++EI EV++ + +  N D +DEDLY  ALRFR+LRQQ + VS
Subjt:  MSYHFDDEINEVLKLMQNPCNVDEEDEDLYITALRFRVLRQQSFFVS

B9SCB6 Probable terpene synthase 21.3e-0547.92Show/hide
Query:  MSYHFDDEINEVLKLMQNPCNVDEEDEDLYITALRFRVLRQQSFFVSC
        +SYHF+ EI E L+ + N  +  ++D+DL+  ALRFR+LR+Q   VSC
Subjt:  MSYHFDDEINEVLKLMQNPCNVDEEDEDLYITALRFRVLRQQSFFVSC

J9RLZ7 Germacrene C/D synthase1.7e-0550Show/hide
Query:  MSYHFDDEINEVLKLMQNPCNVDEEDEDLYITALRFRVLRQQSFFVSC
        ++YHF  EI  VL       N   +D+DLY+T+LRFR+LRQQ + VSC
Subjt:  MSYHFDDEINEVLKLMQNPCNVDEEDEDLYITALRFRVLRQQSFFVSC

Q43714 (+)-delta-cadinene synthase isozyme A4.4e-0647.92Show/hide
Query:  MSYHFDDEINEVLKLMQNPCNVDEEDEDLYITALRFRVLRQQSFFVSC
        +SYHF+ EI + L+ +    N ++ D DLY TALRFR+LR+  F +SC
Subjt:  MSYHFDDEINEVLKLMQNPCNVDEEDEDLYITALRFRVLRQQSFFVSC

Q6Q3H3 (-)-germacrene D synthase4.4e-0654.17Show/hide
Query:  MSYHFDDEINEVLKLMQNPCNVDEEDEDLYITALRFRVLRQQSFFVSC
        ++YHF+ EI+EVLK M +   V  E ED+Y  +LRFR+LRQQ + VSC
Subjt:  MSYHFDDEINEVLKLMQNPCNVDEEDEDLYITALRFRVLRQQSFFVSC

Arabidopsis top hitse value%identityAlignment
AT2G24210.1 terpene synthase 107.3e-0440.43Show/hide
Query:  MSYHFDDEINEVLKLMQNPCNVDEEDEDLYITALRFRVLRQQSFFVS
        +SYHF+ EI+ +L         + ++ DL+ TAL FR+ RQ  F VS
Subjt:  MSYHFDDEINEVLKLMQNPCNVDEEDEDLYITALRFRVLRQQSFFVS

AT3G25810.1 Terpenoid cyclases/Protein prenyltransferases superfamily protein6.6e-0547.06Show/hide
Query:  MSYHFDDEINEVLK--LMQNPCNV--DEEDEDLYITALRFRVLRQQSFFVS
        +SYHF+ EIN +L    ++N  N+   +++EDL+ TAL FR+LRQ  F VS
Subjt:  MSYHFDDEINEVLK--LMQNPCNV--DEEDEDLYITALRFRVLRQQSFFVS

AT3G25820.1 terpene synthase-like sequence-1,8-cineole1.5e-0448.08Show/hide
Query:  MSYHFDDEINEV-----LKLMQNPCNVDEEDEDLYITALRFRVLRQQSFFVS
        +SYHF+ EIN+      LK+ +N    D+E EDL+ T+L FR+LRQ  F VS
Subjt:  MSYHFDDEINEV-----LKLMQNPCNVDEEDEDLYITALRFRVLRQQSFFVS

AT3G25820.2 terpene synthase-like sequence-1,8-cineole1.5e-0448.08Show/hide
Query:  MSYHFDDEINEV-----LKLMQNPCNVDEEDEDLYITALRFRVLRQQSFFVS
        +SYHF+ EIN+      LK+ +N    D+E EDL+ T+L FR+LRQ  F VS
Subjt:  MSYHFDDEINEV-----LKLMQNPCNVDEEDEDLYITALRFRVLRQQSFFVS

AT3G25830.1 terpene synthase-like sequence-1,8-cineole1.5e-0448.08Show/hide
Query:  MSYHFDDEINEV-----LKLMQNPCNVDEEDEDLYITALRFRVLRQQSFFVS
        +SYHF+ EIN+      LK+ +N    D+E EDL+ T+L FR+LRQ  F VS
Subjt:  MSYHFDDEINEV-----LKLMQNPCNVDEEDEDLYITALRFRVLRQQSFFVS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTTATCACTTTGATGATGAAATTAATGAAGTTCTAAAGCTAATGCAAAATCCTTGCAATGTTGACGAAGAAGATGAGGATCTTTACATTACGGCTCTTAGATTTCG
AGTGCTTAGACAACAAAGTTTCTTTGTTTCATGTGGTAACTCTCTCTCAAGTGATTTAATTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCTTATCACTTTGATGATGAAATTAATGAAGTTCTAAAGCTAATGCAAAATCCTTGCAATGTTGACGAAGAAGATGAGGATCTTTACATTACGGCTCTTAGATTTCG
AGTGCTTAGACAACAAAGTTTCTTTGTTTCATGTGGTAACTCTCTCTCAAGTGATTTAATTTGA
Protein sequenceShow/hide protein sequence
MSYHFDDEINEVLKLMQNPCNVDEEDEDLYITALRFRVLRQQSFFVSCGNSLSSDLI